Literature DB >> 32839016

Emerging Insights into the Distinctive Neuronal Methylome.

Adam W Clemens1, Harrison W Gabel2.   

Abstract

The genomes of mammalian neurons are enriched for unique forms of DNA methylation, including exceptionally high levels of non-CG methylation. Here, we review recent studies defining how non-CG methylation accumulates in neurons and is read out by the critical regulator of neuronal transcription, MeCP2. We discuss the role of gene expression and genome architecture in establishing non-CG methylation and highlight emerging mechanistic insights into how non-CG methylation and MeCP2 control transcription. Further, we describe the cell type-specific functions of this methylation and explore growing evidence that disruption of this regulatory pathway contributes to neurodevelopmental disorders. These findings uncover how the distinctive epigenome in neurons facilitates the development and function of the complex mammalian brain.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  DNMT3A; MeCP2; gene regulation; mCH; neurodevelopmental disorders; non-CG DNA methylation

Mesh:

Year:  2020        PMID: 32839016      PMCID: PMC7572801          DOI: 10.1016/j.tig.2020.07.009

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  95 in total

1.  Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome.

Authors:  Wei Xie; Cathy L Barr; Audrey Kim; Feng Yue; Ah Young Lee; James Eubanks; Emma L Dempster; Bing Ren
Journal:  Cell       Date:  2012-02-17       Impact factor: 41.582

2.  H3K36me2/3 Binding and DNA Binding of the DNA Methyltransferase DNMT3A PWWP Domain Both Contribute to its Chromatin Interaction.

Authors:  Michael Dukatz; Katharina Holzer; Michel Choudalakis; Max Emperle; Cristiana Lungu; Pavel Bashtrykov; Albert Jeltsch
Journal:  J Mol Biol       Date:  2019-10-18       Impact factor: 5.469

3.  Mice with truncated MeCP2 recapitulate many Rett syndrome features and display hyperacetylation of histone H3.

Authors:  Mona Shahbazian; Juan Young; Lisa Yuva-Paylor; Corinne Spencer; Barbara Antalffy; Jeffrey Noebels; Dawna Armstrong; Richard Paylor; Huda Zoghbi
Journal:  Neuron       Date:  2002-07-18       Impact factor: 17.173

4.  DNA methylation and the frequency of CpG in animal DNA.

Authors:  A P Bird
Journal:  Nucleic Acids Res       Date:  1980-04-11       Impact factor: 16.971

5.  Structural basis for recognition of histone H3K36me3 nucleosome by human de novo DNA methyltransferases 3A and 3B.

Authors:  Grégoire Rondelet; Thomas Dal Maso; Luc Willems; Johan Wouters
Journal:  J Struct Biol       Date:  2016-03-15       Impact factor: 2.867

6.  DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.

Authors:  Helen V Firth; Shola M Richards; A Paul Bevan; Stephen Clayton; Manuel Corpas; Diana Rajan; Steven Van Vooren; Yves Moreau; Roger M Pettett; Nigel P Carter
Journal:  Am J Hum Genet       Date:  2009-04-02       Impact factor: 11.025

7.  Mutations in the DNA methyltransferase gene DNMT3A cause an overgrowth syndrome with intellectual disability.

Authors:  Katrina Tatton-Brown; Sheila Seal; Elise Ruark; Jenny Harmer; Emma Ramsay; Silvana Del Vecchio Duarte; Anna Zachariou; Sandra Hanks; Eleanor O'Brien; Lise Aksglaede; Diana Baralle; Tabib Dabir; Blanca Gener; David Goudie; Tessa Homfray; Ajith Kumar; Daniela T Pilz; Angelo Selicorni; I Karen Temple; Lionel Van Maldergem; Naomi Yachelevich; Robert van Montfort; Nazneen Rahman
Journal:  Nat Genet       Date:  2014-03-09       Impact factor: 38.330

8.  Complete Profiling of Methyl-CpG-Binding Domains for Combinations of Cytosine Modifications at CpG Dinucleotides Reveals Differential Read-out in Normal and Rett-Associated States.

Authors:  Benjamin C Buchmuller; Brinja Kosel; Daniel Summerer
Journal:  Sci Rep       Date:  2020-03-04       Impact factor: 4.379

Review 9.  Neuronal DNA Methyltransferases: Epigenetic Mediators between Synaptic Activity and Gene Expression?

Authors:  Gonca Bayraktar; Michael R Kreutz
Journal:  Neuroscientist       Date:  2017-05-17       Impact factor: 7.519

10.  The Tatton-Brown-Rahman Syndrome: A clinical study of 55 individuals with de novo constitutive DNMT3A variants.

Authors:  Katrina Tatton-Brown; Anna Zachariou; Chey Loveday; Anthony Renwick; Shazia Mahamdallie; Lise Aksglaede; Diana Baralle; Daniela Barge-Schaapveld; Moira Blyth; Mieke Bouma; Jeroen Breckpot; Beau Crabb; Tabib Dabir; Valerie Cormier-Daire; Christine Fauth; Richard Fisher; Blanca Gener; David Goudie; Tessa Homfray; Matthew Hunter; Agnete Jorgensen; Sarina G Kant; Cathy Kirally-Borri; David Koolen; Ajith Kumar; Anatalia Labilloy; Melissa Lees; Carlo Marcelis; Catherine Mercer; Cyril Mignot; Kathryn Miller; Katherine Neas; Ruth Newbury-Ecob; Daniela T Pilz; Renata Posmyk; Carlos Prada; Keri Ramsey; Linda M Randolph; Angelo Selicorni; Deborah Shears; Mohnish Suri; I Karen Temple; Peter Turnpenny; Lionel Val Maldergem; Vinod Varghese; Hermine E Veenstra-Knol; Naomi Yachelevich; Laura Yates; Nazneen Rahman
Journal:  Wellcome Open Res       Date:  2018-04-23
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  3 in total

Review 1.  Epigenetic regulation in Huntington's disease.

Authors:  Jae Wook Hyeon; Albert H Kim; Hiroko Yano
Journal:  Neurochem Int       Date:  2021-05-24       Impact factor: 4.297

Review 2.  DNA Methylation and Establishing Memory.

Authors:  Carol Bernstein
Journal:  Epigenet Insights       Date:  2022-01-19

Review 3.  DNA Epigenetics in Addiction Susceptibility.

Authors:  Graham Kaplan; Haiyang Xu; Kristen Abreu; Jian Feng
Journal:  Front Genet       Date:  2022-01-25       Impact factor: 4.599

  3 in total

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