Literature DB >> 32838127

Investigation of Plasmonic Detection of Human Respiratory Virus.

Chandreyee Manas Das1,2, Yan Guo3, Lixing Kang1,2, Ho-Pui Ho4, Ken-Tye Yong1,2.   

Abstract

The COVID-19 virus has been recently identified as a new species of virus that can cause severe infections such as pneumonia. The sudden outbreak of this disease is being considered a pandemic. Given all this, it is essential to develop smart biosensors that can detect pathogens with minimum time delay. Surface plasmon resonance (SPR) biosensors make use of refractive index (RI) changes as the sensing parameter. In this work, based on actual data taken from previous experimental works done on plasmonic detection of viruses, a detailed simulation of the SPR scheme that can be used to detect the COVID-19 virus is performed and the results are extrapolated from earlier schemes to predict some outcomes of this SPR model. The results indicate that the conventional Kretschmann configuration can have a limit of detection (LOD) of 2E-05 in terms of RI change and an average sensitivity of 122.4 degRIU-1 at a wavelength of 780 nm.
© 2020 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  COVID‐19; graphenes; kretschmann layout; plasmonic bio‐sensing; simulations

Year:  2020        PMID: 32838127      PMCID: PMC7300606          DOI: 10.1002/adts.202000074

Source DB:  PubMed          Journal:  Adv Theory Simul        ISSN: 2513-0390


Introduction

The last day of the year 2019 saw the sudden outbreak of many cases of pneumonia in Wuhan, situated in the Hubei province of China that seemed to be caused by an unknown bug. Later, it was found out that the pathogen was a unique strain of a coronavirus that was never seen before and they named it as COVID‐19. To date, the number of confirmed and suspected cases have been exponentially rising and there have been no signs of relief. Coronaviruses belong to the family of Coronaviridae and other Nidovirales and can majorly be seen in humans and mammals. The symptoms of this disease can range from mild cough, runny nose, sneezing, and running fever to severe lung congestion and pneumonia. The virus can spread by coming into close contact with infected people by being exposed to their phlegm or cough droplets or by coming in contact with infected surfaces. Because of the constant flow of people in and out of infected countries, the situation has become pandemic and there are more than 6 million confirmed cases to date. Thus, the WHO has announced this outbreak as a cause of global concern. Compared to other earlier serious coronavirus outbreaks in the past like Middle East respiratory syndrome coronavirus (MERS‐CoV) in 2012 and severe acute respiratory syndrome coronavirus (SARS‐CoV) in 2002, which had high mortality rates, the COVID‐19 virus has a relatively lower death rate of 2%. However, the transmission rate of this particular newly found strain of virus is higher than the earlier viruses of the same family.[ ] Acute respiratory diseases (ARD) are quite common and can affect children and adults of any age. Major viruses that have caused ARD include parainfluenza virus (PIV) type 1 (PIV1), PIV2, PIV3, PIV4, respiratory syncytial virus (RSV), influenza A and B viruses, bocavirus, adenovirus, rhinovirus, coronavirus (CoV), enterovirus, the newly discovered parvovirus types 4 and 5, and mimivirus. Rhinoviruses and CoVs have been affecting humans since the 1960s. However, until recently the medical fraternity never gave much attention to them since their impact was considered to be minor. CoVs can be fatal and in some cases they can cause severe lower respiratory tract infections (LRTI) and hence diagnostic testing to determine the pathogen becomes really important. Therefore, developing an efficient and reliable diagnostic system that can differentiate and distinguish among these pathogens is of paramount importance.[ ] Table below shows a list of several diagnostic methods that are used for detecting respiratory viruses and it also gives their drawbacks. The tests are mainly categorized into serological testing: hemagglutination inhibition assay (HI), complement fixation test and enzyme immunoassays like enzyme linked immunosorbent assay (ELISA); immunofluorescence: direct fluorescence antibody (DFA); and nucleic acid amplification Test (NAAT): reverse transcription polymer chain reaction (RT‐PCR), qPCR, nucleic acid sequence‐based amplification (NASBA), and loop‐mediated isothermal amplification (LAMP). Serological testing determines the presence of any antibodies that result because of the presence of the corresponding antigens obtained from being infected with the respective viruses. Immunofluorescence measures the fluorescence of a fluorescent dye that attaches to the antibody. NAAT amplifies the nucleic acids DNA or RNA and measures the fluorescent levels of dyes that attach to these amplified molecules.
Table 1

Diagnostic methods of respiratory viruses

S. No.Genre of testCurrent respiratory virus detection techniqueDrawbacksSignal measured
1.Serological testingHemagglutination inhibition assay (HI)[ 2 ]

Low sensitivity and specificity

Agglutination level observed under microscope.
2.Complement fixation test

Low sensitivity

Time‐consuming

Non‐specific

Presence of cell lysis of sheep red blood cells observed under microscope.
3.Enzyme immunoassays like Enzyme Linked Immunosorbent Assay (ELISA)

Expensive kits

Well‐trained technicians required

False positive/negative results possible with mutated antigens

Absorbance values produced from the substrate‐enzyme complex.
4.ImmunofluorescenceDirect fluorescence antibody (DFA)[ 2 ]

Cross reactivity

Careful controls to ensure no false positives/negatives are present

Fluorescence observed under microscope
5.Nucleic Acid Amplification Test (NAAT)Reverse Transcription Polymer Chain Reaction (RT‐PCR), qPCR[ 2 ]

Time‐consuming

Trained analysts required

Systematic and careful collection, handling and transportation of specimen

Genetic variability of RNA can result in mismatches between primers and target sequences giving false negative results

Fluorescent signal from DNA binding dyes
6.Nucleic acid sequence‐based amplification (NASBA)[ 3 ]

High‐quality RNA required

Maintenance of reaction temperatures up to 42° C

Target RNA sequence should have 120–150 nucleotides for optimal amplification

Fluorescent signal from molecular beacons attached to RNA.
7.Loop‐mediated isothermal amplification (LAMP)[ 4 ]

Proper design of primer

Less sensitive in case of complex samples like blood

Fluorescence values DNA binding dyes.
Diagnostic methods of respiratory viruses Low sensitivity and specificity Low sensitivity Time‐consuming Non‐specific Expensive kits Well‐trained technicians required False positive/negative results possible with mutated antigens Cross reactivity Careful controls to ensure no false positives/negatives are present Time‐consuming Trained analysts required Systematic and careful collection, handling and transportation of specimen Genetic variability of RNA can result in mismatches between primers and target sequences giving false negative results High‐quality RNA required Maintenance of reaction temperatures up to 42° C Target RNA sequence should have 120–150 nucleotides for optimal amplification Proper design of primer Less sensitive in case of complex samples like blood The physics behind the concept of surface plasmon resonance (SPR) came into existence in the 1980s. Surface plasmons (SP) are formed as a result of interaction between electromagnetic (EM) light waves and nano‐sized metals like gold (Au) or silver (Ag). Plasmon‐based immunoassays have garnered a lot of attention in the field of biomolecular sensing. SPR‐based assays have several advantages that can overcome the drawbacks and limitations of other conventional methods of testing. These assays rely on refractive index (RI) changes for detection of biomolecules and therefore they do not need any label. Since only small amount of sample sizes are required for testing, this technique can be very cost‐effective. Additionally, commercial SPR machines can handle complex samples and hence it is not mandatory to have extremely pure high‐quality samples if proper care is taken while sample injection through the microfluidic channels and the instrument is properly maintained by frequent regular clean‐up of its internal components. Moreover, the results are repeatable and have high accuracy. In short, plasmonic detection technique offers label‐free and real‐time approach toward investigation of biomolecular reactions.[ , , , , , , , , , , , , , ] Table shows some previously designed SPR schemes that have been used for detection of several viruses. It lists down the ligand molecules used for capturing the viruses, the specific SPR scheme, the limit of detection (LOD), and the interrogation technique or the signal measured. There have been many SPR schemes where commercial sensing equipment have been used for detecting respiratory viruses like PlexArray HT system used for detecting viruses like Influenza A, Influenza B, H1N1, RSV; Spreeta SPR detector for detecting avian influenza virus (AIV) and Biacore T100 for detecting influenza virus.
Table 2

Earlier works on SPR‐based detection of viruses

S. No.Name of virusCapturing moleculeSPR schemeDetection limitSignal measured
1.Plant virus coat proteins[ 19 ] DNA aptamersIBIS iSPR (IBIS Technologies BV, Hengelo, The Netherlands)250 nm Angular modulation
2.Avian Influenza A H7N9 virus[ 20 ] H7‐mAbCustom made Intensity modulated (IM) – SPR402 copies/mLVoltage measured in mV
3.Multiple Respiratory Viruses (Influenza A, Influenza B, H1N1, RSV, PIV 1,2,3, Adenovirus, SARS CoV)[ 21 ] Oligonucleotide probesPlexArray HT system, Plexera Bioscience

Influ A—5 nm

Influ B—1 nm

PIV1—1 nm

PIV2—2.5 nm

PIV3—3.5 nm

RSV—3 nm

ADV—0.5 nm

SARS—2 nm

H1N1—3 nm

Angular modulation
4.Avian Influenza Virus H1N1[22] DNA aptamersSpreeta SPR detector, Texas Instruments0.128 HAUAngular modulation
5.Anti‐EBNA[ 23 ] BSA‐EBNACustom made WDM‐SPR1 pm Wavelength modulation
6.Cowpea Mosaic Virus[ 24 ] Single chain variable fragment scFv moleculesBiacore X12.5 μg mL−1 Angular modulation
7.HIV‐1[ 25 ] Streptavidin‐biotin modified chipsBiacore 100016.6 μg mL−1 Angular modulation
8.hHBV[ 26 ] Anti‐HBVSpreeta SPR, Texas Instruments9.2 nm Angular modulation
9.Avian Leucosis Virus[ 27 ] mAb ALV‐JCustom made SPR waveguide immunosensorWavelength modulation
10.Influenza virus[ 28 ] α2‐3 Sia glycan and α2‐6 Sia glycanBiacore T1003.125 nm Angular modulation
Earlier works on SPR‐based detection of viruses Influ A—5 nm Influ B—1 nm PIV1—1 nm PIV2—2.5 nm PIV3—3.5 nm RSV—3 nm ADV—0.5 nm SARS—2 nm H1N1—3 nm SPR biosensors rely on the generation of surface plasma waves (SPW) for studying biomolecular interactions. SPWs are free electron density waves traveling across the metallic surface. It is crucial to have a plasmonic metal like gold (Au) or silver (Ag) that have large number of free electrons. These waves are excited by p‐polarized light interacting with the electrons on the metallic surface. When the component of incident light wave vector (k x) parallel to the surface matches with that of the SPW (k sp), the resonance condition is achieved. It is not possible to generate SPWs by direct coupling of light with the smooth metal surface since the propagation constant of an SPW is greater than the incident light wave vector. With special arrangements like the attenuated total reflection (ATR) configuration, the two wave vectors can be matched. The conventional Kretschmann arrangement makes use of the ATR method for the excitation of SPs. The configuration consists of a high RI prism like SF10, SF11, or BK7 coated with a thin‐film nano‐sized plasmonic metal (Au or Ag) and is followed by a dielectric medium (air or water). The incoming light crosses the prism and gets total internally reflected at the prism base, where an evanescent wave is produced that penetrates the metal film. By varying the angle of incidence, the two wave vectors can be matched and the resonance condition can be achieved. This angle is known as the SPR angle and at this condition the reflected light has minimum intensity. Mathematically, this can be explained using Equations (1)–(3). In the Kretschmann arrangement, medium one is the glass prism, medium two is the plasmonic metal Au, and medium three is the analyte (de‐ionized (D.I.) water). n 1, n 2, and n 3 represent the respective RI's of the three different media.[ , , , , ] The resonance angle can be determined using Equations (1) and (2) above. The resonance angle varies with changes in RI of the analyte medium. When biomolecular ligand‐analyte interactions occur at the sensor surface, they cause small changes in the RI of the analyte layer. Thus, these small changes cause the SPR peak angular position (PAP) to shift. In commercial SPR sensors, the sensorgram displays the relative change in the SPR PAP in real time (response measured in resonance units (RU) vs time) that shows the binding interactions taking place on the sensor surface. A changing SPR angle gets depicted as a changing response signal in the sensorgram. Most commercially available SPR sensors make use of angular interrogation technique where the change in RI caused by analyte‐ligand interaction causes a movement of the resonance angle. A change of 1000 RU in the response corresponds to 0.1° change in SPR angle.[ , , ] There are many commercial SPR biosensor systems. Most of them operate at the far end of visible spectrum or at the beginning of near‐infra red (NIR) region. Biacore 3000 operates at about 780 nm. SPRm 200 manufactured by Biosensing Instrument (BI) works at 690 nm and Spreeta 2000 developed by Texas Instruments Inc. uses an 830 nm light source. Thus, in this work we perform our simulation at these three wavelengths. In Section 2, we discuss about the simulation method with its mathematical details and the SPR sensing structure (both standard Kretschmann scheme and graphene modified layout). We discuss about the simulation results in Section 3 where we also present some electric field simulation data obtained using a software called COMSOL Multiphysics. Finally, in Section 4, we end with a concluding note.

Structure, Equation, and Simulation Method

Sensor Structure

The basic SPR sensing scheme consists of 50 nm Au coated on a high RI glass prism. The reason behind choosing 50 nm Au is that the basic Kretschmann arrangement uses standard 50 nm Au and the commercial sensors available in the market too make use of this standard arrangement. Hence, we have three layers. BK7 prism forms the first layer. The plasmonic metal Au is the second layer and the analyte D.I. water acts as the third layer. Commercial sensors generally use buffer solutions as the analyte. For instance, Biacore 3000 uses hepes buffered saline (HBS) as the analyte. Since the RI of HBS is not very different from that of D.I. water, we believe that changing the analyte to running buffer solution will not cause a significant change in the simulation results. The sensing scheme has been depicted in Figure . To effectively capture the target pathogen molecule under test, it is essential to functionalize the Au surface using ligands like antibodies or aptamers. For instance, in ref. [21] the sensor surface was modified with oligonucleotide probes for detection of multiple respiratory viruses like Influenza A and B, PIV 1, 2, and 3. DNA aptamers were used for structural modification in case of AIV H1N1 detection.[ ] Biotin‐streptavidin modified chips were used for HIV‐1 detection.[ ] We also perform additional simulation on graphene modified SPR scheme. In this case, we add N gh layers of 0.34 nm graphene between Au and the analyte. Hence, there are total four layers in this modified layout where graphene is now the third layer and the analyte forms the fourth layer.
Figure 1

Schematic of SPR setup.

Schematic of SPR setup.

Mathematical Equations

We use Fresnel's equations [Transfer matrix method (TMM)] for calculating the reflectivity of the multi‐layer SPR structure. where Elaborating on the different variables found in Equations (4) through (9), the total number of layers is denoted by N. λ represents the incident light wavelength and the RI and dielectric constant of the kth layer are given by n k and εk respectively. Also, . The thickness of the kth layer is given by d k and θ1 denotes the p‐polarized light incident angle. R p represents the reflectivity, θSPR denotes the angle of minimum reflectivity, n bio is the RI of the analyte, and S is the angular sensitivity. M denotes the characteristic matrix of the N‐layer system used in the TMM. The RI of BK7 prism, graphene, and the dielectric constant of Au can be found in refs. [29, 30, 31]. The respective RI and dielectric constant of these layers at different wavelengths have been provided in Table S1, Supporting Information. The RI of D.I. water has been considered to be 1.33. The thickness of the metallic layer is considered to be 50 nm. For graphene, (where t gh is the thickness of one layer of graphene and it is taken to be equal to 0.34 nm and N gh, d gh denote the total graphene layers and the total thickness, respectively).

Simulation Technique

We perform the simulations at λ = 690, 780, and 830 nm. We vary the RI of the analyte layer n bio from 1E‐5 to 1.1E‐3 in steps of 1E‐6 and calculate the sensitivity using Equation (6). For the graphene modified structure, we first optimize N gh and arrive at a configuration that gives us maximum sensitivity. For calculating the sensitivity here, we take Next, for the optimized scheme, we vary the RI of the analyte layer from 5E‐6 to 1.1E‐3 in steps of 1E‐6 and calculate the sensitivity.

Results and Discussion

We perform the simulations at three different working wavelengths of commercial biosensors: SPRm200—690 nm, Biacore 3000—780 nm, and Spreeta 2000—830 nm. Figure below shows the basic SPR reflectivity curve, which is basically the variation of reflectivity, the ratio of intensities of reflected and incident lights, with the angle of incident light. Since the prism has a high RI, the incident light experiences total internal reflection (TIR) for angles larger than the critical angle. When the incident angle exceeds the critical angle, a drop in the reflectivity is observed. At the SPR angle, the reflectivity is minimum and beyond this resonance angle, the reflectivity again starts increasing with an increase in the incident angle. The respective SPR angles at different wavelengths are: 690 nm—68.88°, 780 nm—67.21°, and 830 nm—66.56°.
Figure 2

SPR reflectivity curve.

SPR reflectivity curve. Our simulation is based on data available from previous experiment works done by Bai et al.[ ] and Suenaga et al.[ ] In ref. [22], the researchers designed a SPR scheme to detect AIV H1N1. They used DNA aptamers to capture the virus. The captured AIV H1N1 molecules caused a rise in RI. We specifically make use of the calibration curve that relates virus concentrations [hemagglutination units (HAU)] to changes in RI. The AIV H1N1 has been used since the calibration curve directly relates virus concentration with change in RI. Since the concentration is not in specific molar units, the simulation cannot provide a specific molar detection limit. However, the simulation can provide a generic idea in broad terms on the possibility of using SPR scheme in the future. Table 2 provides details on several respiratory viruses that have been detected using the SPR scheme. The SPR scheme was able to detect a minimum of 2 nm of the SARS CoV (S. No. 3 in Table 2).[ ] Although, the COVID‐19 and SARS viruses are quite different in nature, they belong to the same coronavirus family. Thus, given the fact that the SPR scheme was able to successfully detect low concentration of the SARS CoV, it gives us hope that the same plasmonic sensing scheme can be optimistically used to detect the COVID‐19 virus. However, the exact detection limit is unknown and can only be assured after the design of a practical SPR layout. In ref. [28], the researchers modified the sensor surface with α2‐3 Sia glycan and α2‐6 Sia glycan to capture hemagglutinin (HA) proteins derived from AIV. Using Biacore T100, they could detect different concentrations of HA protein of A/H5N1/Vietnam/1203/2004. We make use of the sensorgram response curve that displays real‐time data. For the pure Au Kretschmann layout, we vary the RI of analyte from 1E‐5 to 1.1E‐3 in steps of 1E‐06. Figure below gives the variation curve of sensitivity versus change in RI for the three wavelengths. The minimum detection limits in terms of change in RI are: 690 nm—5.1E‐5, 780 nm—2E‐5, and 830 nm—6.8E‐5. Using Equation (3), we can write the sensitivity as below in Equation (10). The relation between sensitivity and change in RI is complex and the nature is quite non‐linear. The resulting sensitivity at a particular change in RI is the ratio of change in resonance angle to change in RI, and since change in resonance angle is also a function of change in RI, the resultant ratio does not follow a set pattern. At different wavelengths the values of n 1 and n 2 change. It is the cumulative result of n 1, n 2, and that lead to the sensitivity value at a particular wavelength. The relation is not simple and thus we do not observe a general trend with changing wavelengths.
Figure 3

Sensitivity variation with changes in RI of the analyte for Kretschmann configuration.

Sensitivity variation with changes in RI of the analyte for Kretschmann configuration. Using the calibration curve for AIV H5N1 detection, we calculate the respective concentration of virus in HAU with the help of the equation below given in ref. [22]. The respective values of HAU concentrations at these minimum RI values for the three wavelengths are: 690 nm – 0.0669 HAU, 780 nm – 0.033 HAU, and 830 nm – 0.0855 HAU. The maximum sensitivities at these wavelengths are: 690 nm –196.07 degRIU−1, 780 nm – 500 degRIU−1, and 830 nm – 147.05 degRIU−1 and the average sensitivity values are: 690 nm –114.88 degRIU−1, 780 nm – 122.4 and 830 nm – 95.8 . The average sensitivity has been arrived by considering the sensitivity values at RI changes from 1E‐05 to 1.1E‐03. Using the definition in ref. [22] one HAU corresponds to a concentration of virus that is capable of completely agglutinating the red blood cells. Using Equation (11), the corresponding RI change for one HAU is 0.000905. In case of our SPR layout, since the HAU concentrations at these wavelengths are much below one HAU, we can argue that the SPR‐based biosensor can safely detect the minimum toxicity level. As seen from Figure 3, the sensitivity values are high at low RI changes. This aspect can be really beneficial since biomolecular detection of nano and micro molecules like viruses and bacteria result in small RI changes. Thus, having a high sensitivity value at low RI change of analyte will enable easier detection of pathogens. SPWs are EM waves traveling on the metal‐dielectric interface. These waves have two components, one parallel to the surface of the metal and the other in the direction normal to it. The normal component of electric field is maximum at the sensor surface and it decreases exponentially as we move toward the analyte region. The field soon vanishes after traveling about one‐third to half wavelength distance. The penetration depth, L p, is the distance at which the field becomes e−1 of its value at the surface.[ , , ] Figure displays the variation between the normal part of the electric field and the distance from the metal‐dielectric interface. The penetration depth of this field at the three wavelengths are: 690 nm – 150.62 nm, 780 nm – 170.96 nm, and 830 nm – 183.71 nm. Biomolecular interactions that occur within this penetration depth are able to cause RI changes of the analyte and thus these interactions can then be detected. Figure S1, Supporting Information, shows a pictorial representation of the normal component of electric field along the entire sensor surface. The evanescent nature of this field can be easily seen.[ ]
Figure 4

Variation of normal component of electric field with the distance from the metal‐dielectric interface.

Variation of normal component of electric field with the distance from the metal‐dielectric interface. 2D materials constitute a fresh category of materials that possess some remarkable physical, optical, and chemical properties. Among these materials, graphene can offer several benefits in SPR‐based sensing. Graphene can contribute to significant boost in the electric field at the substrate interface that can lead to higher sensitivity because of increased plasmon generation. Additionally, they have a large surface area of about 2630 m2 g−1 and thus can have greater interaction with the analyte. They can selectively attach to aromatic compounds through pi–pi interactions.[ , , , ] Hence, graphene can easily capture small biomolecules with this specific pi–pi bonding that they can form with the flowing analyte. Non‐specific binding can cause major issues as it can lead to erroneous sensorgram curves. The non‐specific binding sites can be blocked by using polyethylene glycol as a blocking agent.[ ] Apart from these features, graphene can now be commercially fabricated and is not just limited to research laboratories in universities. The coating of graphene over gold is also a known procedure and can be performed at a mass scale in industry. Several graphene‐based schemes have been reported by various researchers. For instance, in ref. [39], the researchers were able to detect DNA hybridization events in attomolar concentration range with graphene‐coated SPR interfaces. In another similar biomolecular detection scheme, researchers were able to detect low concentrations of microRNA and other molecules like adenosine using standard SPR substrate modified by graphene oxide‐gold nanoparticles.[ ] Thus, we further analyze the graphene modified SPR configuration to have a detailed look into the enhancement in sensitivity and detection limits that it can give us. For the Au + graphene layout, we first optimize N gh. Using Equations (4) through (9), we evaluate the sensitivity for this modified layout. Figure shows the sensitivity change as a function of graphene layers. We can observe a general trend here. The sensitivity increases as the graphene layers increase up to a specific limit beyond which the sensitivity starts falling down. With added graphene layers, there is enhanced light‐matter coupling that enables more SPs to be produced and thus the sensitivity multiplies. However, when the number of graphene layers exceeds a certain value, the effect is counterproductive as it causes the incident photons to get absorbed because of which less photons are able to interact with the plasmonic metal causing reduced generation of plasmons. The number of layers of graphene that gives us the highest sensitivity is our optimized condition. The optimized condition for the three wavelengths are: 690 nm – 15 layers, 780 nm – 22 layers, and 830 nm – 26 layers.
Figure 5

Variation of sensitivity as a function of number of graphene layers.

Variation of sensitivity as a function of number of graphene layers. In the modified Au + graphene layout, we vary the RI of analyte from 5E‐6 to 1.1E‐3 and observe the sensitivity. Figure below displays the variation of sensitivity with changes in the RI of the analyte for the graphene modified SPR layout. The minimum detection limits for the Au + graphene configuration in terms of change in RI are: 690 nm—7E‐6, 780 nm—1.1E‐5, and 830 nm—4E‐5. Also, the respective values of HAU concentrations at these minimum RI values for the three wavelengths are: 690 nm—0.0188 HAU, 780 nm—0.023 HAU, and 830 nm—0.054 HAU; the maximum sensitivities at these wavelengths are: 690 nm—1428.6 degRIU−1, 780 nm—909.09 degRIU−1, and 830 nm—250 degRIU−1; and the average sensitivity values are: 690 nm—172.04 , 780 nm—156.93 , and 830 nm—132.17 . If we compare the Au + graphene layout with the standard Kretschmann configuration, the detection limits are lowered by 4.4E‐5 @ 690 nm, 9E‐6 @ 780 nm, 2.8E‐5 @ 830 nm and the average sensitivities are enhanced 1.49 times @ 690 nm, 1.28 times @ 780 nm, 1.37 times @ 830 nm.
Figure 6

Sensitivity variation with changes in RI of the analyte for Au + graphene layout.

Sensitivity variation with changes in RI of the analyte for Au + graphene layout. For both only Au configuration and Au + graphene layout, at the maximum sensitivity data point, the change in SPR angle is 0.01° for all wavelengths. For commercial sensors, a 1000 RU change in the response corresponds to a shift of 0.1°.[ ] Thus, for our case, this corresponds to a change of 100 RU. Using the real‐time response curve of detection of HA protein of Suenaga et al.[ ] we develop a relation between concentration level and change in response in RIU. Figure S2, Supporting Information, displays this relation. We fit a logarithmic curve to the data points. Equation (12) shows the logarithmic relation between concentration of virus in nm (X) and change in response in RU (Y). A 100 RU change correlates to a concentration of 3.615 nm. Table 2 lists the detection limits for SPR detection of several respiratory viruses. The detection limits are: Influenza A—5 nm, Influenza B—1 nm, PIV1—1 nm, PIV2—2.5 nm, PIV3—3.5 nm, RSV—3 nm, ADV—0.5 nm, SARS—2 nm, and H1N1—3 nm.[ ] Considering these limits, we can argue that 3.615 nm is a reasonable value obtained as the detection limit from the simulation.

Conclusion

Plasmon‐based biosensors are rapidly evolving as a label‐free and real‐time bio‐physical detection technique capable of giving accurate and reliable results in a quick span of time. The unanticipated breakdown of the contagious COVID‐19 virus has claimed many lives and has jeopardized the entire world. In this work, we basically demonstrated with the help of simulation that SPR‐based biosensors can serve as an important tool for detection of respiratory viruses. We performed the simulation at three different operating wavelengths of some commercially available SPR sensors. With actual data from previous real‐time biomolecular SPR experiments on detection of AIV we performed simulation at 690, 780, and 830 nm for Au and Au + graphene layout and arrived at some key sensitivity and detection limit values. The Au layout gives a minimum LOD of 2E‐5 and a maximum sensitivity of 500 degRIU−1 at 780 nm. For the Au + Graphene configuration, the detection limit and sensitivity values are 7E‐6 and 1428.6 degRIU−1 respectively at 690 nm. Additionally, using the experimental work done by Suenaga et. al.,[ ] we developed a relation between concentration level and change in response in RIU. We found out that the SPR scheme can detect 3.615 nm of virus concentration. Hence, in clinical terms we can argue that the SPR scheme can detect concentration in the nm range.

Conflict of Interest

The authors declare no conflict of interest. Supporting Information Click here for additional data file.
  24 in total

1.  Pushing the detection limits: the evanescent field in surface plasmon resonance and analyte-induced folding observation of long human telomeric repeats.

Authors:  Constanze Schlachter; Fred Lisdat; Marcus Frohme; Volker A Erdmann; Zoltán Konthur; Hans Lehrach; Jörn Glökler
Journal:  Biosens Bioelectron       Date:  2011-11-10       Impact factor: 10.618

2.  A miniaturized germanium-doped silicon dioxide-based surface plasmon resonance waveguide sensor for immunoassay detection.

Authors:  Jhen-Gang Huang; Chen-Lung Lee; Hsueh-Min Lin; Tsung-Liang Chuang; Way-Seen Wang; Rong-Huey Juang; Ching-Ho Wang; Chih Kung Lee; Shi-Ming Lin; Chii-Wann Lin
Journal:  Biosens Bioelectron       Date:  2006-09-08       Impact factor: 10.618

3.  Highly sensitive detection of DNA hybridization on commercialized graphene-coated surface plasmon resonance interfaces.

Authors:  Oleksandr Zagorodko; Jolanda Spadavecchia; Aritz Yanguas Serrano; Iban Larroulet; Amaia Pesquera; Amaia Zurutuza; Rabah Boukherroub; Sabine Szunerits
Journal:  Anal Chem       Date:  2014-11-04       Impact factor: 6.986

4.  Simple Strategy for Rapid and Sensitive Detection of Avian Influenza A H7N9 Virus Based on Intensity-Modulated SPR Biosensor and New Generated Antibody.

Authors:  Ying-Feng Chang; Wen-Hung Wang; Yi-Wei Hong; Ruei-Yu Yuan; Kuan-Hsuan Chen; Yu-Wen Huang; Po-Liang Lu; Yen-Hsu Chen; Yi-Ming Arthur Chen; Li-Chen Su; Sheng-Fan Wang
Journal:  Anal Chem       Date:  2018-01-25       Impact factor: 6.986

5.  Electron beam lithography designed silver nano-disks used as label free nano-biosensors based on localized surface plasmon resonance.

Authors:  Neval A Cinel; Serkan Bütün; Ekmel Özbay
Journal:  Opt Express       Date:  2012-01-30       Impact factor: 3.894

6.  Aptamer-based biochips for label-free detection of plant virus coat proteins by SPR imaging.

Authors:  Gergely Lautner; Zsófia Balogh; Viola Bardóczy; Tamás Mészáros; Róbert E Gyurcsányi
Journal:  Analyst       Date:  2010-02-11       Impact factor: 4.616

7.  Influenza virus surveillance using surface plasmon resonance.

Authors:  Emi Suenaga; Hiroshi Mizuno; Penmetcha K R Kumar
Journal:  Virulence       Date:  2012-08-15       Impact factor: 5.882

8.  Graphene oxide-based SPR biosensor chip for immunoassay applications.

Authors:  Nan-Fu Chiu; Teng-Yi Huang; Hsin-Chih Lai; Kou-Chen Liu
Journal:  Nanoscale Res Lett       Date:  2014-08-28       Impact factor: 4.703

9.  Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China.

Authors:  Chaolin Huang; Yeming Wang; Xingwang Li; Lili Ren; Jianping Zhao; Yi Hu; Li Zhang; Guohui Fan; Jiuyang Xu; Xiaoying Gu; Zhenshun Cheng; Ting Yu; Jiaan Xia; Yuan Wei; Wenjuan Wu; Xuelei Xie; Wen Yin; Hui Li; Min Liu; Yan Xiao; Hong Gao; Li Guo; Jungang Xie; Guangfa Wang; Rongmeng Jiang; Zhancheng Gao; Qi Jin; Jianwei Wang; Bin Cao
Journal:  Lancet       Date:  2020-01-24       Impact factor: 79.321

Review 10.  Loop mediated isothermal amplification: An innovative gene amplification technique for animal diseases.

Authors:  Pravas Ranjan Sahoo; Kamadev Sethy; Swagat Mohapatra; Debasis Panda
Journal:  Vet World       Date:  2016-05-11
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1.  Optical Detection of CoV-SARS-2 Viral Proteins to Sub-Picomolar Concentrations.

Authors:  Tamsyn Stanborough; Fiona M Given; Barbara Koch; Campbell R Sheen; André Buzas Stowers-Hull; Mark R Waterland; Deborah L Crittenden
Journal:  ACS Omega       Date:  2021-02-23

Review 2.  Various defects in graphene: a review.

Authors:  Mahesh Datt Bhatt; Heeju Kim; Gunn Kim
Journal:  RSC Adv       Date:  2022-08-03       Impact factor: 4.036

Review 3.  Nanoarchitectonics for conductive polymers using solid and vapor phases.

Authors:  Yuya Oaki; Kosuke Sato
Journal:  Nanoscale Adv       Date:  2022-04-22

4.  Detection of Antibodies against Hepatitis A Virus (HAV) by a Surface Plasmon Resonance (SPR) Biosensor: A New Diagnosis Tool Based on the Major HAV Capsid Protein VP1 (SPR-HAVP1).

Authors:  Gabriel Menezes Costa Dos Santos; Carlos Roberto Alves; Marcelo Alves Pinto; Luciane Almeida Amado Leon; Franklin Souza-Silva
Journal:  Sensors (Basel)       Date:  2021-05-03       Impact factor: 3.576

5.  Design and Numerical Analysis of a Graphene-Coated SPR Biosensor for Rapid Detection of the Novel Coronavirus.

Authors:  Tarik Bin Abdul Akib; Samia Ferdous Mou; Md Motiur Rahman; Md Masud Rana; Md Rabiul Islam; Ibrahim M Mehedi; M A Parvez Mahmud; Abbas Z Kouzani
Journal:  Sensors (Basel)       Date:  2021-05-17       Impact factor: 3.576

Review 6.  Recent Progress in Plasmonic Biosensing Schemes for Virus Detection.

Authors:  Elba Mauriz
Journal:  Sensors (Basel)       Date:  2020-08-22       Impact factor: 3.576

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