| Literature DB >> 32838127 |
Chandreyee Manas Das1,2, Yan Guo3, Lixing Kang1,2, Ho-Pui Ho4, Ken-Tye Yong1,2.
Abstract
The COVID-19 virus has been recently identified as a new species of virus that can cause severe infections such as pneumonia. The sudden outbreak of this disease is being considered a pandemic. Given all this, it is essential to develop smart biosensors that can detect pathogens with minimum time delay. Surface plasmon resonance (SPR) biosensors make use of refractive index (RI) changes as the sensing parameter. In this work, based on actual data taken from previous experimental works done on plasmonic detection of viruses, a detailed simulation of the SPR scheme that can be used to detect the COVID-19 virus is performed and the results are extrapolated from earlier schemes to predict some outcomes of this SPR model. The results indicate that the conventional Kretschmann configuration can have a limit of detection (LOD) of 2E-05 in terms of RI change and an average sensitivity of 122.4 degRIU-1 at a wavelength of 780 nm.Entities:
Keywords: COVID‐19; graphenes; kretschmann layout; plasmonic bio‐sensing; simulations
Year: 2020 PMID: 32838127 PMCID: PMC7300606 DOI: 10.1002/adts.202000074
Source DB: PubMed Journal: Adv Theory Simul ISSN: 2513-0390
Diagnostic methods of respiratory viruses
| S. No. | Genre of test | Current respiratory virus detection technique | Drawbacks | Signal measured |
|---|---|---|---|---|
| 1. | Serological testing | Hemagglutination inhibition assay (HI)[
|
Low sensitivity and specificity | Agglutination level observed under microscope. |
| 2. | Complement fixation test |
Low sensitivity Time‐consuming Non‐specific | Presence of cell lysis of sheep red blood cells observed under microscope. | |
| 3. | Enzyme immunoassays like Enzyme Linked Immunosorbent Assay (ELISA) |
Expensive kits Well‐trained technicians required False positive/negative results possible with mutated antigens | Absorbance values produced from the substrate‐enzyme complex. | |
| 4. | Immunofluorescence | Direct fluorescence antibody (DFA)[
|
Cross reactivity Careful controls to ensure no false positives/negatives are present | Fluorescence observed under microscope |
| 5. | Nucleic Acid Amplification Test (NAAT) | Reverse Transcription Polymer Chain Reaction (RT‐PCR), qPCR[
|
Time‐consuming Trained analysts required Systematic and careful collection, handling and transportation of specimen Genetic variability of RNA can result in mismatches between primers and target sequences giving false negative results | Fluorescent signal from DNA binding dyes |
| 6. | Nucleic acid sequence‐based amplification (NASBA)[
|
High‐quality RNA required Maintenance of reaction temperatures up to 42° C Target RNA sequence should have 120–150 nucleotides for optimal amplification | Fluorescent signal from molecular beacons attached to RNA. | |
| 7. | Loop‐mediated isothermal amplification (LAMP)[
|
Proper design of primer Less sensitive in case of complex samples like blood | Fluorescence values DNA binding dyes. |
Earlier works on SPR‐based detection of viruses
| S. No. | Name of virus | Capturing molecule | SPR scheme | Detection limit | Signal measured |
|---|---|---|---|---|---|
| 1. | Plant virus coat proteins[
| DNA aptamers | IBIS iSPR (IBIS Technologies BV, Hengelo, The Netherlands) | 250 n | Angular modulation |
| 2. | Avian Influenza A H7N9 virus[
| H7‐mAb | Custom made Intensity modulated (IM) – SPR | 402 copies/mL | Voltage measured in mV |
| 3. | Multiple Respiratory Viruses (Influenza A, Influenza B, H1N1, RSV, PIV 1,2,3, Adenovirus, SARS CoV)[
| Oligonucleotide probes | PlexArray HT system, Plexera Bioscience |
Influ A—5 n Influ B—1 n PIV1—1 n PIV2—2.5 n PIV3—3.5 n RSV—3 n ADV—0.5 n SARS—2 n H1N1—3 n | Angular modulation |
| 4. | Avian Influenza Virus H1N1[22] | DNA aptamers | Spreeta SPR detector, Texas Instruments | 0.128 HAU | Angular modulation |
| 5. | Anti‐EBNA[
| BSA‐EBNA | Custom made WDM‐SPR | 1 p | Wavelength modulation |
| 6. | Cowpea Mosaic Virus[
| Single chain variable fragment scFv molecules | Biacore X | 12.5 μg mL−1 | Angular modulation |
| 7. | HIV‐1[
| Streptavidin‐biotin modified chips | Biacore 1000 | 16.6 μg mL−1 | Angular modulation |
| 8. | hHBV[
| Anti‐HBV | Spreeta SPR, Texas Instruments | 9.2 n | Angular modulation |
| 9. | Avian Leucosis Virus[
| mAb ALV‐J | Custom made SPR waveguide immunosensor | — | Wavelength modulation |
| 10. | Influenza virus[
| α2‐3 Sia glycan and α2‐6 Sia glycan | Biacore T100 | 3.125 n | Angular modulation |
Figure 1Schematic of SPR setup.
Figure 2SPR reflectivity curve.
Figure 3Sensitivity variation with changes in RI of the analyte for Kretschmann configuration.
Figure 4Variation of normal component of electric field with the distance from the metal‐dielectric interface.
Figure 5Variation of sensitivity as a function of number of graphene layers.
Figure 6Sensitivity variation with changes in RI of the analyte for Au + graphene layout.