Literature DB >> 32830044

Challenges and Opportunities in Machine-Augmented Plant Stress Phenotyping.

Arti Singh1, Sarah Jones2, Baskar Ganapathysubramanian3, Soumik Sarkar3, Daren Mueller4, Kulbir Sandhu2, Koushik Nagasubramanian5.   

Abstract

Plant stress phenotyping is essential to select stress-resistant varieties and develop better stress-management strategies. Standardization of visual assessments and deployment of imaging techniques have improved the accuracy and reliability of stress assessment in comparison with unaided visual measurement. The growing capabilities of machine learning (ML) methods in conjunction with image-based phenotyping can extract new insights from curated, annotated, and high-dimensional datasets across varied crops and stresses. We propose an overarching strategy for utilizing ML techniques that methodically enables the application of plant stress phenotyping at multiple scales across different types of stresses, program goals, and environments.
Copyright © 2020 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  abiotic stress; biotic stress; deep learning; image-based phenotyping; machine learning; standard area diagram

Mesh:

Year:  2020        PMID: 32830044     DOI: 10.1016/j.tplants.2020.07.010

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  14 in total

Review 1.  New approaches to improve crop tolerance to biotic and abiotic stresses.

Authors:  Miguel González Guzmán; Francesco Cellini; Vasileios Fotopoulos; Raffaella Balestrini; Vicent Arbona
Journal:  Physiol Plant       Date:  2021-09-17       Impact factor: 5.081

2.  High-throughput field crop phenotyping: current status and challenges.

Authors:  Seishi Ninomiya
Journal:  Breed Sci       Date:  2022-02-17       Impact factor: 2.014

3.  Dissecting the Root Phenotypic and Genotypic Variability of the Iowa Mung Bean Diversity Panel.

Authors:  Kevin O Chiteri; Talukder Zaki Jubery; Somak Dutta; Baskar Ganapathysubramanian; Steven Cannon; Arti Singh
Journal:  Front Plant Sci       Date:  2022-01-27       Impact factor: 5.753

Review 4.  Machine Learning for Plant Stress Modeling: A Perspective towards Hormesis Management.

Authors:  Amanda Kim Rico-Chávez; Jesus Alejandro Franco; Arturo Alfonso Fernandez-Jaramillo; Luis Miguel Contreras-Medina; Ramón Gerardo Guevara-González; Quetzalcoatl Hernandez-Escobedo
Journal:  Plants (Basel)       Date:  2022-04-02

5.  Classification of high-throughput phenotyping data for differentiation among nutrient deficiency in common bean.

Authors:  Boris Lazarević; Klaudija Carović-Stanko; Marek Živčak; Dominik Vodnik; Tomislav Javornik; Toni Safner
Journal:  Front Plant Sci       Date:  2022-07-22       Impact factor: 6.627

Review 6.  Inter-tissue and inter-organ signaling in drought stress response and phenotyping of drought tolerance.

Authors:  Takashi Kuromori; Miki Fujita; Fuminori Takahashi; Kazuko Yamaguchi-Shinozaki; Kazuo Shinozaki
Journal:  Plant J       Date:  2021-12-16       Impact factor: 7.091

7.  End-to-End Fusion of Hyperspectral and Chlorophyll Fluorescence Imaging to Identify Rice Stresses.

Authors:  Chu Zhang; Lei Zhou; Qinlin Xiao; Xiulin Bai; Baohua Wu; Na Wu; Yiying Zhao; Junmin Wang; Lei Feng
Journal:  Plant Phenomics       Date:  2022-08-02

Review 8.  Biotechnological Approaches for Genetic Improvement of Lemon (Citrus limon (L.) Burm. f.) against Mal Secco Disease.

Authors:  Chiara Catalano; Mario Di Guardo; Gaetano Distefano; Marco Caruso; Elisabetta Nicolosi; Ziniu Deng; Alessandra Gentile; Stefano Giovanni La Malfa
Journal:  Plants (Basel)       Date:  2021-05-17

9.  Wheat Spike Blast Image Classification Using Deep Convolutional Neural Networks.

Authors:  Mariela Fernández-Campos; Yu-Ting Huang; Mohammad R Jahanshahi; Tao Wang; Jian Jin; Darcy E P Telenko; Carlos Góngora-Canul; C D Cruz
Journal:  Front Plant Sci       Date:  2021-06-17       Impact factor: 5.753

10.  Deep Multiview Image Fusion for Soybean Yield Estimation in Breeding Applications.

Authors:  Luis G Riera; Matthew E Carroll; Zhisheng Zhang; Johnathon M Shook; Sambuddha Ghosal; Tianshuang Gao; Arti Singh; Sourabh Bhattacharya; Baskar Ganapathysubramanian; Asheesh K Singh; Soumik Sarkar
Journal:  Plant Phenomics       Date:  2021-06-23
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