Literature DB >> 32828427

Uridine natural products: Challenging targets and inspiration for novel small molecule inhibitors.

Christine A Arbour1, Barbara Imperiali2.   

Abstract

Nucleoside derivatives, in particular those featuring uridine, are familiar components of the nucleoside family of bioactive natural products. The structural complexity and biological activities of these compounds have inspired research from organic chemistry and chemical biology communities seeking to develop novel approaches to assemble the challenging molecular targets, to gain inspiration for enzyme inhibitor development and to fuel antibiotic discovery efforts. This review will present recent case studies describing the total synthesis and biosynthesis of uridine natural products, and de novo synthetic efforts exploiting features of the natural products to produce simplified scaffolds. This research has culminated in the development of complementary strategies that can lead to effective uridine-based inhibitors and antibiotics. The strengths and challenges of the juxtaposing methods will be illustrated by examining select uridine natural products. Moreover, structure-activity relationships (SAR) for each natural product-inspired scaffold will be discussed, highlighting the impact on inhibitor development, with the aim of future uridine-based small molecule expansion.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Inhibitor discovery; Natural product antibiotics; Nucleoside analog; Structure-activity relationship; Uridine

Mesh:

Substances:

Year:  2020        PMID: 32828427      PMCID: PMC7446765          DOI: 10.1016/j.bmc.2020.115661

Source DB:  PubMed          Journal:  Bioorg Med Chem        ISSN: 0968-0896            Impact factor:   3.641


  59 in total

1.  Solid-phase synthesis and biological evaluation of a uridinyl branched peptide urea library.

Authors:  Dianqing Sun; Victoria Jones; Elizabeth I Carson; Robin E B Lee; Michael S Scherman; Michael R McNeil; Richard E Lee
Journal:  Bioorg Med Chem Lett       Date:  2007-10-04       Impact factor: 2.823

2.  Total synthesis and structure-activity investigation of the marine natural product neopeltolide.

Authors:  Daniel W Custar; Thomas P Zabawa; John Hines; Craig M Crews; Karl A Scheidt
Journal:  J Am Chem Soc       Date:  2009-09-02       Impact factor: 15.419

3.  Enantioselective total synthesis and confirmation of the absolute and relative stereochemistry of streptorubin B.

Authors:  Dennis X Hu; Michael D Clift; Kiel E Lazarski; Regan J Thomson
Journal:  J Am Chem Soc       Date:  2010-12-17       Impact factor: 15.419

4.  Mechanistic analysis of muraymycin analogues: a guide to the design of MraY inhibitors.

Authors:  Tetsuya Tanino; Bayan Al-Dabbagh; Dominique Mengin-Lecreulx; Ahmed Bouhss; Hiroshi Oyama; Satoshi Ichikawa; Akira Matsuda
Journal:  J Med Chem       Date:  2011-11-15       Impact factor: 7.446

5.  Total synthesis of (-)-caprazamycin A.

Authors:  Hugh Nakamura; Chihiro Tsukano; Motohiro Yasui; Shinsuke Yokouchi; Masayuki Igarashi; Yoshiji Takemoto
Journal:  Angew Chem Int Ed Engl       Date:  2015-01-22       Impact factor: 15.336

6.  Synthesis of caprazamycin analogues and their structure--activity relationship for antibacterial activity.

Authors:  Shinpei Hirano; Satoshi Ichikawa; Akira Matsuda
Journal:  J Org Chem       Date:  2007-12-20       Impact factor: 4.354

7.  Facile Solid-Phase Synthesis and Assessment of Nucleoside Analogs as Inhibitors of Bacterial UDP-Sugar Processing Enzymes.

Authors:  Amaël G E Madec; Nathaniel S Schocker; Silvano Sanchini; Gadam Myratgeldiyev; Debasis Das; Barbara Imperiali
Journal:  ACS Chem Biol       Date:  2018-08-16       Impact factor: 5.100

Review 8.  Recent advances in the biosynthesis of nucleoside antibiotics.

Authors:  Taro Shiraishi; Tomohisa Kuzuyama
Journal:  J Antibiot (Tokyo)       Date:  2019-09-25       Impact factor: 2.649

Review 9.  Muraymycin nucleoside-peptide antibiotics: uridine-derived natural products as lead structures for the development of novel antibacterial agents.

Authors:  Daniel Wiegmann; Stefan Koppermann; Marius Wirth; Giuliana Niro; Kristin Leyerer; Christian Ducho
Journal:  Beilstein J Org Chem       Date:  2016-04-22       Impact factor: 2.883

10.  Muraymycin Nucleoside Antibiotics: Structure-Activity Relationship for Variations in the Nucleoside Unit.

Authors:  Anna Heib; Giuliana Niro; Stefanie C Weck; Stefan Koppermann; Christian Ducho
Journal:  Molecules       Date:  2019-12-19       Impact factor: 4.411

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  2 in total

1.  A Convenient Protecting Group for Uridine Ureido Nitrogen: (4,4'-Bisfluorophenyl)methoxymethyl group.

Authors:  Katsuhiko Mitachi; David Mingle; Michio Kurosu
Journal:  Synthesis (Stuttg)       Date:  2021-03-25       Impact factor: 2.969

2.  Backbone-Anchoring, Solid-Phase Synthesis Strategy To Access a Library of Peptidouridine-Containing Small Molecules.

Authors:  Christine A Arbour; Barbara Imperiali
Journal:  Org Lett       Date:  2022-03-10       Impact factor: 6.072

  2 in total

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