| Literature DB >> 32827715 |
Friederike Maechler1, Maximilian Gertler2, Julia Hermes3, Welmoed van Loon2, Frank Schwab3, Brar Piening3, Shay Rojansky4, Franziska Hommes2, Franka Kausch2, Andreas K Lindner2, Susen Burock5, Heike Rössig6, Claudia Hartmann6, Valerie Kirchberger6, Alexander Thieme7, Michael Behnke3, Petra Gastmeier3, Frank P Mockenhaupt2, Joachim Seybold6.
Abstract
OBJECTIVE: In Berlin, the first public severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) testing site started 1 day after the first case in the city occurred. We describe epidemiological and clinical characteristics and aim at identifying risk factors for SARS-CoV-2 detection during the first 6 weeks of operation.Entities:
Keywords: Asymptomatic; Coronavirus; Coronavirus disease 2019; Olfaction disorders; Screening; Severe acute respiratory syndrome coronavirus 2
Mesh:
Year: 2020 PMID: 32827715 PMCID: PMC7438270 DOI: 10.1016/j.cmi.2020.08.017
Source DB: PubMed Journal: Clin Microbiol Infect ISSN: 1198-743X Impact factor: 8.067
Fig. 1Patient attendance and SARS-CoV-2 positivity. (a) Number of consultations, tests and positive cases by calendar week (which are shifted by 1 day and start on Tuesday). (b) Number of patients tested and tested positive if decision on testing strictly followed RKI recommendations. (c) Number of tested patients missed by RKI recommendations.
Basic characteristics of patients with SARS-CoV-2 among all patients tested (n = 4333)
| Total | Negative | Positive | Positive % among patients tested (total) | Crude OR (95% CI) | P value | |
|---|---|---|---|---|---|---|
| Patients | 4333 | 4000 | 333 | 7.69 | ||
| Age (years), median (IQR) | 34 (26–47) | 34 (26–47) | 34 (28–47) | 1.00 (1–1.01) | 0.269 | |
| Male sex, | 2127 (49.1%) | 1938 (48.5%) | 189 (56.8%) | 8.89 | 1.40 (1.12–1.75) | 0.004 |
| Chronic lung disease | 418 (9.6%) | 388 (9.7%) | 30 (9%) | 7.18 | 0.92 (0.62–1.36) | 0.682 |
| Chronic heart disease | 259 (6%) | 244 (6.1%) | 15 (4.5%) | 5.79 | 0.73 (0.43–1.24) | 0.241 |
| Diabetes | 108 (2.5%) | 101 (2.5%) | 7 (2.1%) | 6.48 | 0.83 (0.38–1.8) | 0.635 |
| Obesity | 135 (3.1%) | 126 (3.2%) | 9 (2.7%) | 6.67 | 0.85 (0.43–1.7) | 0.652 |
| Referral | ||||||
| Charité employee | 433 (10%) | 414 (10.4%) | 19 (5.7%) | 4.39 | 0.52 (0.33–0.84) | 0.008 |
| Without referral | 1843 (42.5%) | 1675 (41.9%) | 168 (50.5%) | 9.12 | 1.43 (1.14–1.79) | 0.002 |
| Referral from doctor | 558 (12.9%) | 529 (13.2%) | 29 (8.7%) | 5.20 | 0.61 (0.41–0.9) | 0.013 |
| Other | 644 (14.9%) | 597 (14.9%) | 47 (14.1%) | 7.30 | 0.88 (0.65–1.18) | 0.387 |
| No data | 855 (19.7%) | 785 (19.6%) | 70 (21%) | 8.19 | 1.09 (0.83–1.44) | 0.539 |
| Travel | ||||||
| No travel | 3309 (76.4%) | 3066 (76.7%) | 243 (73%) | 7.34 | 0.82 (0.64–1.06) | 0.130 |
| Austria | 119 (2.7%) | 96 (2.4%) | 23 (6.9%) | 19.33 | 3.02 (1.89–4.83) | <0.0001 |
| USA | 21 (0.5%) | 17 (0.4%) | 4 (1.2%) | 19.05 | 2.85 (0.96–8.52) | 0.061 |
| Switzerland | 31 (0.7%) | 28 (0.7%) | 3 (0.9%) | 9.68 | 1.29 (0.39–4.27) | 0.677 |
| Spain | 44 (1%) | 40 (1%) | 4 (1.2%) | 9.09 | 1.2 (0.43–3.39) | 0.725 |
| France | 33 (0.8%) | 30 (0.8%) | 3 (0.9%) | 9.09 | 1.2 (0.37–3.96) | 0.761 |
| Within Germany | 228 (5.3%) | 209 (5.2%) | 19 (5.7%) | 8.33 | 1.1 (0.68–1.78) | 0.706 |
| Italy | 244 (5.6%) | 235 (5.9%) | 9 (2.7%) | 3.69 | 0.45 (0.23–0.87) | 0.019 |
| Other | 260 (6%) | 241 (6%) | 19 (5.7%) | 7.31 | 0.94 (0.58–1.53) | 0.814 |
| Destination missing | 44 (1%) | 38 (1%) | 6 (1.8%) | 13.64 | 1.91 (0.8–4.56) | 0.143 |
| Time since return (days), median (IQR) | 7 (3–1) | 7 (3–14) | 9 (3–15) | 0.635 | ||
| No travel | 3309 (76.4%) | 3066 (76.7%) | 243 (73%) | 7.34 | 1 = reference | 0.245 |
| ≤7 days | 403 (9.3%) | 367 (9.2%) | 36 (10.8%) | 8.93 | 1.24 (0.86–1.79) | 0.254 |
| 8–14 days | 264 (6.1%) | 245 (6.1%) | 19 (5.7%) | 7.20 | 0.98 (0.6–1.59) | 0.930 |
| >14 days | 233 (5.4%) | 207 (5.2%) | 26 (7.8%) | 11.16 | 1.59 (1.03–2.43) | 0.035 |
| Return date missing | 124 (2.9%) | 115 (2.9%) | 9 (2.7%) | 7.26 | 0.99 (0.5–1.97) | 0.971 |
| Contact | ||||||
| Contact to confirmed COVID-19 case | 1645 (38%) | 1456 (36.4%) | 189 (56.8%) | 11.49 | 2.29 (1.83–2.88) | <0.0001 |
| Time since last contact (days), median (IQR) | 6 (3–9) | 6 (3–9) | 6 (3–8) | 0.707 | ||
| No contact | 2688 (62%) | 2544 (63.6%) | 144 (43.2%) | 5.36 | 1 = reference | <0.0001 |
| ≤7 days | 815 (18.8%) | 723 (18.1%) | 92 (27.6%) | 11.29 | 2.25 (1.71–2.96) | <0.0001 |
| 8–14 days | 503 (11.6%) | 433 (10.8%) | 70 (21%) | 13.92 | 2.86 (2.11–3.87) | <0.0001 |
| >14 days | 134 (3.1%) | 125 (3.1%) | 9 (2.7%) | 6.72 | 1.27 (0.63–2.55) | 0.499 |
| Contact date missing | 193 (4.5%) | 175 (4.4%) | 18 (5.4%) | 9.33 | 1.82 (1.09–3.04) | 0.023 |
| Symptoms | ||||||
| Presence of any symptoms | 3890 (89.8%) | 3569 (89.2%) | 321 (96.4%) | 8.25 | 3.23 (1.80–6.37) | <0.0001 |
| Time since symptom onset (days), median (IQR) | 4 (2–7) | 4 (2–7) | 4 (2–7) | 0.440 | ||
| No symptoms | 443 (10.2%) | 431 (10.8%) | 12 (3.6%) | 2.71 | 1 = reference | <0.0001 |
| ≤7 days | 2060 (47.5%) | 1877 (46.9%) | 183 (55%) | 8.88 | 3.50 (1.94–6.34) | <0.0001 |
| 8–14 days | 700 (16.2%) | 629 (15.7%) | 71 (21.3%) | 10.14 | 4.05 (2.17–7.57) | <0.0001 |
| >14 days | 330 (7.6%) | 316 (7.9%) | 14 (4.2%) | 4.24 | 1.59 (0.73–3.49) | 0.246 |
| Symptom date missing | 800 (18.5%) | 747 (18.7%) | 53 (15.9%) | 6.63 | 2.55 (1.35–4.82) | 0.004 |
| Recommended for testing by RKI | 2530 (58.4%) | 2268 (56.7%) | 262 (78.7%) | 10.36 | 2.82 (2.15–3.69) | <0.0001 |
IQR, interquartile range; RKI, Robert Koch-Institute.
Data are n (column %) unless indicated otherwise.
χ2 test.
Other referrals included referral via hotline, from local public health authorities or from employer.
Other countries included China, Iran and other countries with n < 10 travellers.
Type III test.
Symptoms at presentation among individuals tested positive or negative for SARS-CoV-2
| Symptom | Negative ( | Positive ( | p value | ||
|---|---|---|---|---|---|
| % | % | ||||
| No symptoms | 431 | 10.8 | 12 | 3.6 | <0.001 |
| Fever | 968 | 24.2 | 121 | 36.3 | <0.001 |
| Shortness of breath | 597 | 14.9 | 61 | 18.3 | 0.098 |
| Chest tightness/pain | 308 | 7.7 | 26 | 7.8 | 0.943 |
| Chills | 827 | 20.7 | 122 | 36.6 | <0.001 |
| Fatigue | 1888 | 47.2 | 212 | 63.7 | <0.001 |
| Body aches | 1145 | 28.6 | 171 | 51.4 | <0.001 |
| Cough | 2405 | 60.1 | 218 | 65.5 | 0.056 |
| Rhinorrhoea | 1594 | 39.9 | 162 | 48.6 | 0.002 |
| Diarrhoea | 547 | 13.7 | 51 | 15.3 | 0.405 |
| Sore throat | 1984 | 49.6 | 159 | 47.7 | 0.516 |
| Headache | 1713 | 42.8 | 187 | 56.2 | <0.001 |
| Impaired smell/taste ( | 112/777 | 14.4 | 29/73 | 39.7 | <0.001 |
Fig. 2Symptoms of patients tested positive and negative for SARS-CoV-2; crude, unadjusted odds ratios. Asterisk represents findings for a subset of n = 850 patients.
Multivariate analysis of factors associated with of SARS-CoV-2 infection
| Adjusted odds ratio | 95% CI | |
|---|---|---|
| Age (years) | 1.011 | (1.002–1.019) |
| Male sex | 1.397 | (1.103–1.769) |
| Chronic heart disease | 0.546 | (0.307–0.971) |
| Without referral | 1.42 | (1.122–1.798) |
| Contact to known SARS-CoV-2 case | ||
| No contact | 1 = reference | |
| ≤7 days | 3.177 | (2.361–4.274) |
| 8–14 days | 3.415 | (2.475–4.711) |
| >14 days | 1.283 | (0.619–2.663) |
| Last date of contact missing | 2.527 | (1.462–4.367) |
| Travel | ||
| Travel to USA | 3.893 | (1.241–12.207) |
| Travel to Austri | 4.163 | (2.48–6.989) |
| Time since onset of symptoms. | ||
| Reference no symptom | 1 = reference | |
| ≤7 days | 2.674 | (1.426–5.016) |
| 8–14 days | 3.613 | (1.871–6.977) |
| >14 days | 1.498 | (0.661–3.396) |
| Date symptom onset missing | 2.355 | (1.208–4.592) |
| Symptom type | ||
| Fever | 1.412 | (1.081–1.843) |
| Chills | 1.496 | (1.136–1.972) |
| Body aches | 2.155 | (1.664–2.792) |
| Sore throat | 0.613 | (0.479–0.783) |
| Impaired sense of smell/taste | ||
| No impaired senste of smell/taste | 1 = reference | |
| No data | 1.028 | (0.723–1.462) |
| Impaired senste of smell/taste | 4.076 | (2.365–7.025) |
Parameters included in the model were age, sex, underlying diseases, referral types, duration since return from travel, travel destinations, duration since last contact, duration since onset of symptoms and symptom types.
Data collected in a subset of patients (n = 850); c-statistic (area unter the curve) = 0.741.