Ilia V Baranovsky1, Lidia S Konstantinova1,2, Mikhail A Tolmachev1, Vadim V Popov2, Konstantin A Lyssenko3,4, Oleg A Rakitin1,2. 1. N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 119991 Moscow, Russia. 2. Nanotechnology Education and Research Center, South Ural State University, 454080 Chelyabinsk, Russia. 3. Department of Chemistry, M. V. Lomonosov Moscow State University, Leninskiye Gory, 1, 119991 Moscow, Russia. 4. G. V. Plekhanov Russian University of Economics, 36 Stremyanny Per., 117997 Moscow, Russia.
Abstract
A new synthetic pathway to four substituted imidazoles from readily available 2-((4-aryl(thienyl)-5H-1,2,3-dithiazol-5-ylidene)amino)phenols has been developed. Benzo[d]oxazol-2-yl(aryl(thienyl))methanimines were proved as key intermediates in their synthesis. The formation of an imidazole ring from two methanimine derivatives likely includes the opening of one benzoxazole ring followed by ring closure by intermolecular nucleophilic attack of the N-methanimine atom to a carbon atom of another methanimine.
A new synthetic pathway to four substituted imidazoles from readily available 2-((4-aryl(thienyl)-5H-1,2,3-dithiazol-5-ylidene)amino)phenols has been developed. Benzo[d]oxazol-2-yl(aryl(thienyl))methanimines were proved as key intermediates in their synthesis. The formation of an imidazole ring from two methanimine derivatives likely includes the opening of one benzoxazole ring followed by ring closure by intermolecular nucleophilic attack of the N-methanimine atom to a carbon atom of another methanimine.
Entities:
Keywords:
5-Arylimino-1,2,3-dithiazoles; X-ray analysis; four substituted 2H-imidazol-4-amines; sulfur-nitrogen heterocycles; thermolysis
1,2,3-Dithiazolesare one of the most investigated groups of five membered sulfur–nitrogen heterocycles [1,2,3]. In addition to the utility of these heterocyclic compounds as potent biologically active compounds [4,5,6,7,8], they are efficient precursors for functional materials applied in electronics and spintronics [9,10,11,12,13,14]. The chemistry of monocyclic 1,2,3-dithiazoles has attracted considerable attention through recent decades [1,2,3] due to the easy availability of 4,5-dichloro-1,2,3-dithiazolium chloride (Appel’s salt, 1) [15,16]. 4-Chlorosubtituted monocyclic 1,2,3-dithiazoles [1,2,3,17,18,19,20] were thoroughly investigated. The most interesting and valuable parts of this reactivity are various rearrangements of 4-chloro-1,2,3-dithiazoles, especially 5-arylimino derivatives (i.e., 2), which showed a great potential for the synthesis of multiple heterocycles, such as 1,2,4-thiadiazoles [21], isothiazoles [22], benzoxazines and benzothiazines [23], benzimidazoles [24], quinazolones [25], benzothiazoles [26] and benzoxazoles (3, see Scheme 1) [26,27,28], and many others [1,2,29,30]. The formation of these heterocycles was the result of the presence of a chlorine atom at the C-4 position of the 1,2,3-dithiazole ring, which can be readily removed as a chloride anion. Presumably, one might expect that the exchange of 4-chlorine atom in 1,2,3-dithiazoles to poorly leaving groups, such as aryl or hetaryl, can significantly change reaction results. There is only one example of the benzoxazole ring formation (5) from 2-((4-(4-nitrophenyl)-5H-1,2,3-dithiazol-5-ylidene)amino)phenol 4 [28]. 4-Substituted 1,2,3-dithiazoles, except 4-chloro-1,2,3-dithiazoles, are much less available, and their chemistry still needs further developments. A couple of years ago, an easy one pot protocol for the preparation of the 4-substituted 1,2,3-dithiazolium chlorides from readily available acetoximes, disulfur dichloride and pyridine in MeCN has been developed [31]. The treatment of these salts was prepared in situ with aniline afforded 5-phenylimino-1,2,3-dithiazoles in low to moderate yields. Other 5-arylimino-1,2,3-dithiazoles including o-substituted derivatives, which can be used for the synthesis of new heterocyclic systems, were not obtained.
Scheme 1
Synthesis of 5-arylimino-1,2,3-dithiazoles 2 and 4 and subsequent formation of benzo[d]oxazole derivatives 3 and 5.
Herein, we report the synthesis of 2-((4-aryl(hetaryl)-5H-1,2,3-dithiazol-5-ylidene)amino)phenols, their thermal ring transformation into benzo[d]oxazol-2-yl(aryl(hetaryl)methanimines, followed by their unprecedented dimerization of into imidazole derivatives.
2. Results and Discussion
The treatment of 4-aryl(thienyl)-5-chloro-1,2,3-dithiazolium chlorides 6, obtained in situ from acetoximes, n class="Chemical">disulfur dichloride, and pyridine in MeCN in a conditions described by us earlier [31], with o-aminophenol and pyridine at 0 °C and further stirring at room temperature for 2 h, gave imines 6 in moderate to low yields (Scheme 2). All our attempts to increase the yield of imines 7 by varying the base (DABCO, N-ethyldiisopropylamine or o-aminophenol), temperature of the reaction from −20 °C to room temperature, and time of dithiazolium salt 6 formation, resulted in a decrease in the yield of the target product to trace amounts. The low yields of imines 7 can be explained by low stability of the dithiazolium salts 6 at room temperature.
Scheme 2
Synthesis of 2-((4-aryl(thien-2-yl)-5H-1,2,3-dithiazol-5-ylidene)amino)phenols 7.
The thermal behavior of imines 7 was investigated in various solvents (chloroform, benzene, toluene, methanol, ethanol, acetonitrile). The imines 7 were found to be inert by prolonged refluxing (8 h) in chloroform (bp 61 °C) and benzene (bp 80 °C) and were isolated from the reaction mixtures in practically quantitative yields. The heating of the compounds in more polar solvent—ethanol (95% or anhydrous) afforded (benzo[d]oxazol-2-yl)arylmethanones 8 in high yields (Scheme 3).
Scheme 3
Thermolysis of 2-((4-aryl(thien-2-yl)-5H-1,2,3-dithiazol-5-ylidene)amino)phenols 7 in ethanol and methanol.
When continuing the study of thermolysis of imines 7, it was found that when heated in n class="Chemical">methanol (bp 65 °C), the formation of compounds other than methanones 8 is observed. The structure of the methanimines 9 has been confirmed by NMR and IR spectroscopy and mass-spectrometry and was unambiguously determined by an X-ray diffraction study of thienylmethanimine 9f (Figure 1). Presumably, the formation of imines 9 and aroylbenzoxazoles 8 can be explained by the collapse of phenolic oxygen onto C-5 of the dithiazole ring with loss of HCl and sulfur followed by hydrolysis of methanimines 9 [. The difference in the result of reactions in methanol and ethanol can be explained by the higher stability of imine 8 in methanol; for example, NMR spectra of imines 8 were successfully obtained in deuteromethanol, while our attempts to obtain similar spectra in deuteroethanol failed due to their decomposition (hydrolysis).
Figure 1
The general view of benzo[d]oxazol-2-yl(thien-2-yl)methanimine 9f in representation of atoms by thermal ellipsoids (p = 50%).
In the crystal, 9f exists in the form of an isomer with the imine group in transposition to the C=n class="Chemical">N bond of the benzo[d]oxazole ring. Such conformation can be stabilized by the intramolecularN4-H···O1 and/or C14-H···N3 interactions. In order to estimate the stability of two possible isomers, we performed PBE1PBE/def-2-TZVP calculations with the empirical dispersion corrections. The optimization at the above level was followed by the evaluation of the harmonic vibration frequencies. Full geometry optimization revealed that both isomers were characterized by almost equal energy with a small stabilization (0.87 kcal/mol) of the experimentally observed isomer (Figure 2).
Figure 2
The molecular graphs of two isomers with trans- (A) and cis- (B) disposition of C=N bonds. The critical points (3, −1) and (3, +1) are shown by small green and red balls. The bond path for C-H···O and C-H···N interactions are shown by dashed lines.
The topological analysis of the electron density distribution function ρ(r) within Bader’s quantum theory of “Atoms in Molecule’’ (QTAIM) [32] revealed that in both isomers, the imine group did not pn class="Chemical">articipate in the formation of N-H···N or N-H···O interactions. In contrast, for C-H···O or C-H···N contacts, the critical points (3, −1) were located, and thus we can conclude that both of them are attractive interactions. The energy of the above intramolecular C-H···N and C-H···O interactions according to the correlation suggested by Espinosa et al. [33] was 3.1 and 2.9 kcal/mol.
Despite conjugation in the 9f, the crystal molecule was not planar with the dihedral angle between the n class="Chemical">thiophen ring and rest molecule equal to 5.6°. Such conformation in 9f is clearly the consequence of crystal packing. It was found out that the C=N-H group did not participate in any intermolecularhydrogen bond and that molecules were assembled by stacking interactions into infinite columns with the shortest C5···C10 contact equal to 3.405(2)Å.
Further investigation of imines 7 thermolysis in toluene, acetonitrile, or THF showed the formation of new compounds 10 (TLC data) along with methanones 8 and methanimines 9. This was confirmed by a prolonged (4–38 h) refluxing of methanimines 9 in MeCN, which led to the formation of products 10, selectively, with good yields. Mass spectrometry, HRMS, and 1H and 13CNMR data showed that they are products of dimerization of methanimines 9 (Scheme 4).
Scheme 4
Synthesis of imidazoles 10 from methanimines 9.
According to the literature search in SciFinder and Reaxys databases, no similn class="Chemical">ar dimerization reaction of imino derivatives was published in the literature. The structure of imidazoles 10 was finally proved by the X-ray analysis for 4-fluorophenyl analogue 10b (Figure 3).
Figure 3
The general view of 2-((2-(benzo[d]oxazol-2-yl)-2,5-bis(4-fluorophenyl)-2H-imidazol-4-yl)amino)phenol 10b in representation of atoms by thermal ellipsoids (p = 50%).
The interesting feature of 10b was the presence of the shortened N4-H···H-C18 intramoleculn class="Chemical">ar contact with H···H distance (with the account of C-H and N-H bond normalization) equal to 2.08Å. It is reasonable to propose that this shortened contact is clearly the consequence of the competition of the destabilization due to steric hindrance between atoms of amino-phenol and of fluorophenyl and stabilization due to conjugation of this substituents with the central 2H-imidazol ring. In order to analyze the nature of the observed NH···HC contact in the experimental conformation, we performed the optimization of hydrogen atom positions with all other parameters fixed. The consequent topological analysis of ρ(r) revealed that this shortened intramolecular contact corresponded to attractive interaction (Figure 4). Furthermore, the full optimization practically did not change the torsion angles, and the above H···H contact became as short as 2.068Å with CHH and NH···H angles equal to 116.2 and 96.1°. Thus, we can conclude that the observed conformation was not the consequence of the crystal packing effect but rather the inherent feature of this molecule.
Figure 4
The molecular graph of 10b according to PBE1PBE/def-2-TZVP calculation. The critical points (3, −1) and (3, +1) are shown by small green and red balls. The bond path for C-H···H-N and C-H···N interactions is shown by dashed lines.
Crystal molecules were assembled into a centrosymmetric dimer due to the formation of the O2-H···N3 (O···n class="Chemical">N 2.840(2)Å) hydrogen bonds. The latter dimer was additionally stabilized by the stacking interactions with the interplane distance of ~3.4 Å (Figure 5).
Figure 5
O-H···N and stacking bonded centrosymmetric dimer in the crystal of 10b.
Mechanistic Rationale
The described procedure provides a new synthetic pathway to imidazole derivatives from compounds 9 containing n class="Chemical">methanimine and benzoxazole fragments. To the best of our knowledge, this reaction has not been described so far. We assume that the first step is the nucleophilic attack of the N-methanimine atom into the carbon atom of the oxazole ring with the opening of the benzoxazole ring to o-aminophenol moiety, which is well described for many benzoxazoles [34,35,36]. The result of this reaction is the formation of compounds containing three consecutive methanimino groups 11. According to the search from Reaxys database, such structures were not known. The second intramolecular nucleophilic attack of the methanimino-nitrogen to the carbon atom of another methanimino group led to the 2-aminoimidazole ring closure (Scheme 5).
Scheme 5
A suggested reaction path for the formation of imidazoles 9 from methanimines 8.
3. Experimental Section
3.1. General Methods and Materials
The reagents were purchased from commercial sources and used as received. Ethan-1-one oximes were prepared according to the published methods [37] and characterized by NMR spectra. All synthetic operations were performed under a dry argon atmosphere. Solvents were purified by distillation from the appropriate drying agents. Elemental analyses were performed on a 2400 Elemental Analyzer (Perkin Elmer Inc., Waltham, MA, USA). Melting points were determined on a Kofler hot-stage apparatus and were uncorrected. 1H and 13CNMR spectra were taken with a Bruker AM-300, AVANCE DRX 500, and AVANCE II 600 machines (Bruker Ltd., Moscow, Russia) with TMS as the standard. J values are given in Hz. MS spectra (EI, 70 eV) were obtained with a Finnigan MAT INCOS 50 instrument (Thermo Finnigan LLC, San Jose, CA, USA). High-resolution MS spectra were measured on a Bruker micrOTOF II instrument using electrospray ionization (ESI). The measurement was operated in a positive ion mode (interface capillary voltage −4500 V) or in a negative ion mode (3200 V); the mass range was from m/z 50 to m/z 3000 Da; external or internal calibration was performed with Electrospray Calibrant Solution (Fluka Chemicals Ltd., Gillingham, UK). A syringe injection was used for solutions in acetonitrile, methanol, or water (flow rate 3 μL·min−1). Nitrogen was applied as a dry gas; the interface temperature was set at 180 °C. IR spectra were measured with a Bruker “Alpha-T” instrument (Bruker, Billerica, MA, USA) in KBr pellets.X-ray diffraction data for all studied compounds were collected using a SMART APEX II n class="Chemical">area-detector diffractometer (graphite monochromator, ω-scan technique) at the temperature of 120(2) K, using MoKα radiation (0.71073 Å). The intensity data were integrated by the SAINT program and corrected for absorption and decay by the multiscan method (semi-empirical from equivalents) implemented in SADABS. All structures were solved by direct methods using SHELXS [38] and were refined against F2 using SHELXL-2017 [39]. All nonhydrogen atoms were refined with anisotropic displacement parameters. All C-H hydrogen atoms were placed in ideal calculated positions and refined as riding atoms with relative isotropic displacement parameters taken as Uiso(H) = 1.2Ueq(C). The hydrogen atoms of NH and OH groups were located from the Fourier density synthesis. Detailed crystallographic information is provided in Table 1 and as Supplementary Materials in CIF format that can be obtained free of charge via http://www.ccdc.cam.ac.uk/conts/retrieving.html or from the Cambridge Crystallographic Data Centre, 12, Union Road, Cambridge CB2 1EZ, UK; fax: 44-1223-336033 using the reference CCDC numbers (Table 1).
Table 1
X-ray crystallographic data and refinement details for studied molecules.
9f
10b
CCDC number
1993040
1993041
Empirical formula
C28H18F2N4O2
C12H8N2OS
Formula weight
480.46
228.26
T, K
120
120
Crystal system
Monoclinic
Monoclinic
Space group
P21/n
P21/n
Z (Z’)
4 (1)
4(1)
a, Å
12.3650(12)
6.1355(5)
b, Å
12.9901(13)
7.5454(6)
c, Å
14.3314(14)
22.0813(19)
α, °
90
90
β, °
107.871(2)
94.779(2)
γ, °
90
90
V, Å3
2190.9(4)
1018.70(15)
Dcalc,gcm−3
1.457
1.488
μ, cm−1
1.06
2.93
F(000)
992
472
2θmax, °
58
58
Reflections collected
25153
11900
Reflections unique (Rint)
5821 (0.0410)
2710 (0.0357)
Reflections with I > 2σ(I)
4558
2443
Variables/restraints
333
149
R1
0.0425
0.0357
wR2
0.1092
0.0962
GOF
1.024
1.036
Largest difference in peak/hole (e/Å3)
0.328/−0.242
0.415/−0.342
All quantum chemistry computations were performed in the Gaussian09 program [40] using the density functional theory (PBE0) [41] and the def-2-TZVP basis set. The choice of the PBE0 functional was based on the recent paper in which errors of various DFT functionals in the reproduction of an exact electron density and energy n class="Chemical">are discussed [42]. The geometry was optimized using the very tight optimization criteria and empirical dispersion corrections on the total energy [43] with the Becke-Johnson damping (D3) [44].
Topological analyses of the ρ(r) function were performed using the AIMAll program (AIMAll (Version 16.08.17), T. Keith, TK Gristmill Software, Overland Park KS, USA, 2016 (aim.tkgristmill.com)). All expected critical points were found, and the whole set of critical points in each system satisfies the Poincaré-Hopf rule.
3.2. General Procedure for the Synthesis of 2-((4-aryl-5H-1,2,3-dithiazol-5-ylidene)amino)phenols (7)
In summary, a new unprecedented formation of four substituted n class="Chemical">imidazoles containing a benzoxazole ring from the thermolysis of readily available 2-((4-aryl(hetaryl)-5H-1,2,3-dithiazol-5-ylidene)amino)phenols was developed. The possibility of the imidazole ring formation from the compounds containing two methanimino groups was proved. Finally, 4-aryl(hetaryl)-substituted 5H-1,2,3-dithiazoles gave, upon thermolysis, different products from 4-chloro derivatives where the chlorine atom was readily expelled as a chloride anion, and the cyano group was generated. 2,2-Diaryl-2H-imidazol-4-aminesare of interest as a BACE-1 inhibitors for the treatment of Alzheimer’s disease or dementia [47,48].
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