Literature DB >> 32812969

Two-dimensional IR spectroscopy reveals a hidden Fermi resonance band in the azido stretch spectrum of β-azidoalanine.

Jun Young Park1, Hyeok-Jun Kwon2, Saptarsi Mondal1, Hogyu Han2, Kyungwon Kwak1, Minhaeng Cho1.   

Abstract

Azido stretch modes in a variety of azido-derivatized nonnatural amino acids and nucleotides have been used as a site-specific infrared (IR) probe for monitoring changes in their conformations and local electrostatic environments. The vibrational bands of azide probes are often accompanied by complex line shapes with shoulder peaks, which may arise either from incomplete background subtraction, Fermi resonance, or multiple conformers. The isotope substitution in the infrared probe has thus been introduced to remove Fermi resonances without causing a significant perturbation to the structure. Here, we synthesized and labeled the mid-N atoms of aliphatic azide derivatives with 15N to study the effects of isotope labelling on their vibrational properties. The FT-IR spectra of the aliphatic azide with asymmetric lineshape became a single symmetric band upon isotope substitution, which might be an indication of the removal of the hidden Fermi resonance from the system. We also noticed that the 2D-IR spectrum of unlabeled aliphatic azide has cross-peaks, even though it is not apparently identifiable. The 1D slice spectra obtained from the 2D-IR spectra reveal the existence of a hidden Fermi resonance peak. Furthermore, we show that this weak Fermi resonance does not produce discernible oscillatory beating patterns in the IR pump-probe spectrum, which has been used as evidence of the Fermi resonance. Therefore, we confirm that isotope labelling combined with 2D-IR spectroscopy is the most efficient and incisive way to identify the origin of small shoulder peaks in the linear and nonlinear vibrational spectra of various IR probe molecules.

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Year:  2020        PMID: 32812969     DOI: 10.1039/d0cp02693j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  4 in total

1.  Transparent window 2D IR spectroscopy of proteins.

Authors:  Megan C Thielges
Journal:  J Chem Phys       Date:  2021-07-28       Impact factor: 3.488

2.  Protein Dynamics by Two-Dimensional Infrared Spectroscopy.

Authors:  Goran W Tumbic; Md Yeathad Hossan; Megan C Thielges
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2021-07-27       Impact factor: 12.400

3.  TfNN15N: A γ-15N-Labeled Diazo-Transfer Reagent for the Synthesis of β-15N-Labeled Azides.

Authors:  Hyeok-Jun Kwon; Sungduk Gwak; Jun Young Park; Minhaeng Cho; Hogyu Han
Journal:  ACS Omega       Date:  2021-12-30

4.  Versatile Vibrational Energy Sensors for Proteins.

Authors:  Jan G Löffler; Erhan Deniz; Carolin Feid; Valentin G Franz; Jens Bredenbeck
Journal:  Angew Chem Int Ed Engl       Date:  2022-04-06       Impact factor: 16.823

  4 in total

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