| Literature DB >> 32806087 |
Tomasz Mądry1, Agnieszka Czapik1, Marcin Kwit1,2.
Abstract
A readily available stereoEntities:
Year: 2020 PMID: 32806087 PMCID: PMC7458434 DOI: 10.1021/acs.joc.0c00734
Source DB: PubMed Journal: J Org Chem ISSN: 0022-3263 Impact factor: 4.354
Chart 1(a) Porphyrin-Based Noncovalent Probes for Chirality Sensing and (b) Exemplary Sterodynamic Probes for the Covalent Binding and Chirality Sensing of Amines
Figure 1Schematic representation of the designed stereodynamic triaryl probe. Red arrows indicate polarizations of the electronic transition of the highest oscillator strengths within anthracene and naphthalene chromophores.
Chart 2(a) Structures of Compounds under Study, (b) Oak Ridge Thermal Ellipsoid Plot (ORTEP) Drawing Showing an X-ray-Determined Structure of Dialdehyde 2 with Atom Numbering, and (c) Torsion Angles That Characterize a Molecular Conformation
Figure 2UV (upper panels) and ECD (lower panels) spectra of (a) 3a (solid black lines) and 3b (dashed black lines), (b) 4a, (c) 4c, and (d) 4f (blue lines), measured in cyclohexane and calculated at the TD-CAM-B3LYP/6-311++G(d,p) level and ΔΔG-based Boltzmann-averaged UV and ECD spectra of 4a, 4c, and 4f (red lines). The calculated spectra were wavelength-corrected to match the UV maximum. Only the 185–350 nm region is shown. Experimental and calculated ECD spectra of 4f were multiplied by a factor of 4 to increase their visibility.
ECD Data Measured in Cyclohexane and Sensitivity Factors G = |A|/ε × 10–4 Estimated for Imines 3a, 3b, and 4a–j and Amines 6a–j
| compd. | Δε (nm) | compd. | Δε (nm) | ||
|---|---|---|---|---|---|
| –6.6 (224); –2.8 (209); 9.5 (189) | n.d. | –16.2 (297); –6.6 (266); –57.4 (241); 118.2 (226); –120.7 (213); 63.3 (200) | 15.62 | ||
| –14.2 (258); 1.2 (231); 4.4 (218); 5.2 (192) | n.d. | –5.2 (232); 7.1 (212) | 1.07 | ||
| –3.8 (289); –6.1 (238); 19.4 (227); –18.0 (215); 18.0 (188) | 3.08 | 8.3 (231); –7.2 (218); 9.7 (192) | 1.32 | ||
| 2.9 (286); 3.8 (238); –12.8 (227); 16.0 (215); –16.1 (189) | 2.32 | –7.1 (233); 8.3 (215); –6.6 (189) | 1.32 | ||
| –3.7 (289); 8.9 (227); –15.0 (215); 11.2 (188) | 1.91 | –11.4 (232); 14.0 (218); –12.8 (190) | 1.37 | ||
| –8.2 (289); –4.1 (234); 11.9 (227); –20.0 (214); 14.0 (192) | 2.59 | –2.1 (240) | n.d. | ||
| –4.5 (310); –4.3 (245); 1.6 (232); –5.0 (226); 9.9 (211); –2.4 (188) | 1.28 | 5.8 (232); –5.8 (215); 4.0 (190) | 1.03 | ||
| 1.6 (296); –1.1 (266); –2.9 (221); 4.1 (203); 1.6 (188) | 0.70 | –11.8 (237); 42.1 (217); –19.8 (195) | 4.80 | ||
| 11.7 (309); –13.6 (276); 21.3 (236); 19.4 (232); 48.8 (225); –27.0 (208); 84.0 (194) | 6.20 | –24.4 (233); 48.6 (222); –43.0 (193) | 6.74 | ||
| –18.4 (278); 39.7 (226); –20.9 (208); 96.5 (189) | 4.93 | 2.6 (286); –47.4 (233); 4.2 (222); 56.2 (206) | 2.85 | ||
| –28.6 (288); –11.3 (255); –37.0 (229); 28.2 (217); 62.4 (201) | 4.36 | –3.5 (301); 10.6 (235); –36.4 (216); 16.8 (193) | n.d. |
In parentheses, the absolute configuration at the nitrogen-containing stereogenic center is indicated.
Short-wavelength CEs are undistinguishable due to the high noise level.
Figure 3Overlays of X-ray diffraction-determined solid-state structures of (a) 4a (green) and 6a (orange), (b) 4b (aquamarine) and 6b (red), (c) 4c (deep yellow) and 6c (blue), and (d) 4f (deep yellow) and 6f (deep blue). For the disordered molecules, the fragments with lower occupancy factors are shown as a thin line. C-bound hydrogen atoms have been omitted for clarity, and the nitrogen and oxygen atoms are shown as balls.
Figure 4(a) Molecular energy of 5 as a function of angles α1 and α2. (b) Computed at the TD-CAM-B3LYP/6-311++G(d,p) level, long- (Rlong) and short-wavelength (Rshort) rotatory strengths corresponding to experimental exciton couplets of the 1Bb electronic transition as a function of angles α1 and α2. (c) Deconvolution of the ECD spectrum of the low-energy conformer of 5. The ECD spectrum calculated for the whole conformer is in black, the spectrum calculated for the AB part is represented by the blue solid line, the spectrum calculated for the AC part of the molecules is shown as the red line, and the effect of summation (S = 2 × AB + AC) is shown as a brown dashed line. Wavelengths were not corrected. Insets indicate the position of the low-energy electronic transition in 5. (d) Main molecular orbitals involved in the low-energy electronic transitions in the low-energy conformer of 5.
Scheme 1Low-Energy C- and S-Type Conformers of Imine 5 and the Relationship between the Twist of the α Angles and Symmetry of the Molecule
Relative Gibbs Free Energies (ΔΔG, in kcal mol–1); ΔΔG-Based Percentage Populations (Pop.); Values of α1, α2, β1, β2, and ω Angles (in deg) and Predicted Sign of the Exciton Couplet (EC), Calculated at the B3LYP/6-311++G(d,p) Level of Theory for Individual Low-Energy Conformers of 4a
| conf. | ΔΔ | Pop. | α1 | α2 | β1 | β2 | ω | CE |
|---|---|---|---|---|---|---|---|---|
| 1 | 1.77 | 3 | 105 | 105 | 178 | 178 | 29 | (+) |
| 2 | 1.12 | 10 | 101 | 101 | 179 | 179 | 21 | (+) |
| 4 | 0.00 | 65 | 104 | –104 | 176 | –178 | 180 | 0 |
| 6 | 0.64 | 22 | –111 | –111 | –171 | –171 | –41 | (−) |
Conformers are numbered according to their appearance during the conformational search.
α1 = C2–C1–C2′–C1′; α2 = C2″–C1″–C5′–C4′.
β1 = C2′–C1′–C=N; β2 = C5′–C4′–C=N.
ω = C8–C1–C1″–C8″.
Figure 5(a) Overlay of low-energy conformers of 4a calculated at the B3LYP/6-311++G(d,p) level of individual conformers of 4a. (b) ECD spectra calculated at the TD-CAM-B3LYP/6-311++G(d,p) level for the individual low-energy conformers of 4a. Wavelengths were not corrected. Structural and spectral data for a given conformer are shown in the same color: conf. no 1, green; conf. no. 2, blue; conf. no. 4, black; and conf. no. 6, red.
Figure 6Top (upper panel) and side (lower panel) views of the low-energy conformers of (a) 4d (conf. no. 14) and (b) 4h (conf. no. 1). The naphthyl rings closer to the observer are in green, whereas the naphthyl rings away from the observer are in red.
Figure 7(a) ECD spectra of the crude imine samples, obtained from 2 and 3,3-dimethylbutan-2-amine of varying ee. (b) Linear relationships between CE amplitude at 227 nm (blue line) and 215 nm (red line) and the sample ee.
Chart 3Exemplary Sterodynamic Inductor–Reporter Systems and Their Calculated Sensitivity Factors G