Literature DB >> 32783942

A Three-Way Combinatorial CRISPR Screen for Analyzing Interactions among Druggable Targets.

Peng Zhou1, Becky K C Chan1, Yuk Kei Wan1, Chaya T L Yuen1, Gigi C G Choi1, Xinran Li2, Cindy S W Tong1, Sophia S W Zhong1, Jieran Sun1, Yufan Bao3, Silvia Y L Mak4, Maggie Z Y Chow4, Jien Vei Khaw1, Suet Yi Leung5, Zongli Zheng6, Lydia W T Cheung2, Kaeling Tan7, Koon Ho Wong8, H Y Edwin Chan9, Alan S L Wong10.   

Abstract

We present a CRISPR-based multi-gene knockout screening system and toolkits for extensible assembly of barcoded high-order combinatorial guide RNA libraries en masse. We apply this system for systematically identifying not only pairwise but also three-way synergistic therapeutic target combinations and successfully validate double- and triple-combination regimens for suppression of cancer cell growth and protection against Parkinson's disease-associated toxicity. This system overcomes the practical challenges of experimenting on a large number of high-order genetic and drug combinations and can be applied to uncover the rare synergistic interactions between druggable targets.
Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CRISPR; CombiGEM; Parkinson's disease; cancer; combination therapy; combinatorial genetics; drug interaction; genetic interaction; high-throughput screening; neurodegeneration

Year:  2020        PMID: 32783942     DOI: 10.1016/j.celrep.2020.108020

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  7 in total

Review 1.  CRISPR in cancer biology and therapy.

Authors:  Alyna Katti; Bianca J Diaz; Christina M Caragine; Neville E Sanjana; Lukas E Dow
Journal:  Nat Rev Cancer       Date:  2022-02-22       Impact factor: 60.716

Review 2.  Deciphering pathogenicity of variants of uncertain significance with CRISPR-edited iPSCs.

Authors:  Hongchao Guo; Lichao Liu; Masataka Nishiga; Le Cong; Joseph C Wu
Journal:  Trends Genet       Date:  2021-09-08       Impact factor: 11.639

3.  Extensible combinatorial CRISPR screening in mammalian cells.

Authors:  Peng Zhou; Yuk Kei Wan; Becky K C Chan; Gigi C G Choi; Alan S L Wong
Journal:  STAR Protoc       Date:  2021-01-09

Review 4.  CRISPR Screening: Molecular Tools for Studying Virus-Host Interactions.

Authors:  Vladimir Chulanov; Anastasiya Kostyusheva; Sergey Brezgin; Natalia Ponomareva; Vladimir Gegechkori; Elena Volchkova; Nikolay Pimenov; Dmitry Kostyushev
Journal:  Viruses       Date:  2021-11-11       Impact factor: 5.048

5.  A proteomics protocol to identify stimulation-induced binding partners dependent on a specific gene in mammalian cells.

Authors:  Junji Zhu; Wuhan Xiao
Journal:  STAR Protoc       Date:  2021-11-13

6.  Covering the Combinatorial Design Space of Multiplex CRISPR/Cas Experiments in Plants.

Authors:  Kirsten Van Huffel; Michiel Stock; Tom Ruttink; Bernard De Baets
Journal:  Front Plant Sci       Date:  2022-06-20       Impact factor: 6.627

7.  Multiplexed high-throughput localized electroporation workflow with deep learning-based analysis for cell engineering.

Authors:  Cesar A Patino; Nibir Pathak; Prithvijit Mukherjee; So Hyun Park; Gang Bao; Horacio D Espinosa
Journal:  Sci Adv       Date:  2022-07-22       Impact factor: 14.957

  7 in total

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