| Literature DB >> 32763818 |
Ulf Norinder1, Astrud Tuck2, Kalle Norgren2, Vesna Munic Kos3.
Abstract
Given the speed of viral infection spread, repurposing of existing drugs has been given the highest priority in combating the ongoing COVID-19 pandemic. Only drugs that are already registered or close to registration, and therefore have passed lengthy safety assessments, have a chance to be tested in clinical trials and reach patients quickly enough to help in the current disease outbreak. Here, we have reviewed available evidence and possible ways forward to identify already existing pharmaceuticals displaying modest broad-spectrum antiviral activity which is likely linked to their high accumulation in cells. Several well studied examples indicate that these drugs accumulate in lysosomes, endosomes and biological membranes in general, and thereby interfere with endosomal pathway and intracellular membrane trafficking crucial for viral infection. With the aim to identify other lysosomotropic drugs with possible inherent antiviral activity, we have applied a set of clear physicochemical, pharmacokinetic and molecular criteria on 530 existing drugs. In addition to publicly available data, we have also used our in silico model for the prediction of accumulation in lysosomes and endosomes. By this approach we have identified 36 compounds with possible antiviral effects, also against coronaviruses. For 14 of them evidence of broad-spectrum antiviral activity has already been reported, adding support to the value of this approach. Presented pros and cons, knowledge gaps and methods to identify lysosomotropic antivirals, can help in the evaluation of many drugs currently in clinical trials considered for repurposing to target COVID-19, as well as open doors to finding more potent and safer alternatives.Entities:
Keywords: Antiviral drugs; Broad spectrum antivirals; COVID-19; Drug repositioning; Endosomal pathway; Lysosomotropism
Mesh:
Substances:
Year: 2020 PMID: 32763818 PMCID: PMC7392152 DOI: 10.1016/j.biopha.2020.110582
Source DB: PubMed Journal: Biomed Pharmacother ISSN: 0753-3322 Impact factor: 6.529
Fig. 1Interaction of lysosomotropic cationic amphiphilic drugs (CADs) and coronavirus with membrane trafficking in the cell.
Criteria for the selection of drugs with high likelihood of lysosomotropic effects.
| Property | Parametera | Desirable range | Indication | Criterion evaluation |
|---|---|---|---|---|
| Induction of phospholipidosis | PLD induction (exp) | Positive | Interaction with and accumulation in cell membranes – possible impact on membrane surface charge Inhibition of lysosomal functions | Primary inclusion criterion |
| Accumulation in cells | ACC class (calc) | 2−5(3−5b) | Moderate to extremely high accumulation in endosomes/lysosomes Slow-down of endocytosis Increasing endosomal/lysosomal pH | Primary inclusion criterion |
| Protonizability | pKa (basic) (exp or calc) | ≥ 7.5 | Acquiring positive charge in acidic environments (lysosomes and endosomes) Increasing endosomal/lysosomal pH | Primary inclusion criterion |
| Physiological charge (calc) | ≥ 1 | Positive charge at physiological pH | Additional | |
| Number of tertiary nitrogen atoms | ≥ 1 | Presence of the most common protonizable center in molecular structure | Additional | |
| Lipophilicity | logP (exp or calc) | 2.0−6.0 | Ability of the neutral form to distribute into lipids, e.g. membrane Ability to cross the membrane | Additional |
| Volume of distribution | Vd (exp) | ≥ 10 L kg−1 | Distribution and accumulation in tissues | Additional |
| Half-life in plasma/blood | t1/2 (exp) | ≥ 10 h | Persistence in organism | Additional |
Footnote: a exp – experimental parameter, calc – calculated parameter; b – for compounds out of domain of the model; PLD - phospholipidosis.
Selection of drugs with highly likely lysosomotropic behaviour and probable antiviral effects.
Footnote: Data sources: phospholipidosis [26,31], accumulation in cells calculated according to [30], molecular and phys-chem properties from PubChem [44] and DrugBank [63] (https://www.drugbank.ca/), hepatotoxicity from LiverTox [36], broad spectrum antiviral activity [23] (https://drugvirus.info/), pharmacokinetics and cardiotoxicity ([46,[48], [49], [50], [51], [52],54,55,[57], [58], [59], [60], [61], [62],53,47,56,45]). Green – data indicating lysosomotropism; orange – data indicating cardiotoxicity and hepatotoxicity; blue – data indicating safety; grey – approved drugs; yellow – data indicating broad spectrum antiviral effects; +* - drugs approved only in some countries; n.d. – no data.
Selection of drugs with possible lysosomotropic behaviour and antiviral effects.
Footnote: Data sources: phospholipidosis [26,31], accumulation in cells calculated according to [30], molecular and phys-chem properties from PubChem [44] and DrugBank [63] (https://www.drugbank.ca/), hepatotoxicity from LiverTox [36], broad spectrum antiviral activity [23] (https://drugvirus.info/), pharmacokinetics and cardiotoxicity ([46,[48], [49], [50], [51], [52],54,55,[57], [58], [59], [60], [61], [62],53,47,56,45]). For colour legend see Table 2.
Fig. 2Process of finding existing drugs with probable lysosomotropic mechanism of antiviral activity.