| Literature DB >> 32762722 |
Hae-Yun Jung1, Tae Ho Kim1, Jong-Eun Lee2, Hong Kwan Kim1, Jong Ho Cho1, Yong Soo Choi1, Sumin Shin1, Se-Hoon Lee3, Hwanseok Rhee2, Hee Kyung Lee2, Hyun Jung Choi2, Hye Yoon Jang2, Seungjae Lee2, Jung Hee Kang1, Young Ae Choi1, Sanghyuk Lee4, Jinseon Lee5, Yoon La Choi6, Jhingook Kim7.
Abstract
BACKGROUND: Treatment of human lung squamous cell carcinoma (LUSC) using current targeted therapies is limited because of their diverse somatic mutations without any specific dominant driver mutations. These mutational diversities preventing the use of common targeted therapies or the combination of available therapeutic modalities would require a preclinical animal model of this tumor to acquire improved clinical responses. Patient-derived xenograft (PDX) models have been recognized as a potentially useful preclinical model for personalized precision medicine. However, whether the use of LUSC PDX models would be appropriate enough for clinical application is still controversial.Entities:
Keywords: Engraftment; Lung squamous cell carcinoma; Patient-derived xenograft; Preclinical model; Xenograft-associated lymphoproliferative disease
Mesh:
Year: 2020 PMID: 32762722 PMCID: PMC7409653 DOI: 10.1186/s12967-020-02473-y
Source DB: PubMed Journal: J Transl Med ISSN: 1479-5876 Impact factor: 5.531
Fig. 1Establishment of PDX models from tumor samples from Korean patients with LUSC. a A schematic diagram of the experimental procedure for LUSC PDX models and the subsequent NGS analysis. b Representative histological and IHC-stained images of tumor samples from patients with LUSC and PDX models. Scale bars, 200 μm. c Representative histological images showing the tumor samples from the patients with LUSC and PDX models. Epstein–Barr virus (EBV)-encoded RNA (EBER) in situ hybridization images from PDX tumor samples. Brown indicates Epstein–Barr virus positive. Scale bars, 200 μm. d Kaplan–Meier plot showing overall survival (OS) or relapse-free survival (RFS) of the patients whose tumor engraftment was either successful or unsuccessful
Clinical characteristics between successful and failed PDX engraftment
| N = 139 | PDX success | PDX failure | |
|---|---|---|---|
Age(years) Mean | 66.4 ± 6.8 | 64.8 ± 8.9 | 0.244* |
| Gender | |||
| Male | 60 (96.8%) | 73 (94.8%) | 0.692** |
| Female | 2 (3.2%) | 4(5.2%) | |
| Smoking status | |||
| Former or current | 61 (98.4%) | 76 (98.7%) | 1.000** |
| Never | 1 (1.6%) | 1 (1.3%) | |
| Preoperative Chemotherapy | |||
| Yes | 3 (4.8%) | 13 (16.9%) | 0.033** |
| No | 59 (95.2%) | 64 (83.1%) | |
| pTNM stage (7th) | |||
| I | 18 (29.0%) | 28 (36.4%) | 0.348** |
| II | 29 (46.8%) | 25 (32.5%) | |
| III | 14 (22.6%) | 23 (29.9%) | |
| IV | 1 (1.6%) | 1 (1.3%) | |
| Tumor size | |||
| < 3 cm | 13 (21.0%) | 25 (32.5%) | 0.204** |
| 3 < < 5 | 21 (33.9%) | 27 (35.1%) | |
| 5 < < 7 | 21 (33.9%) | 22 (28.6%) | |
| 7 > | 7 (11.3%) | 3 (3.9%) | |
| Differentiation | |||
| Well | 1 (1.6%) | 1 (1.1%) | 1.000** |
| Moderate | 47 (75.8%) | 58 (76.3%) | |
| Poor | 14 (22.6%) | 17 (22.4%) | |
| Recurrence | |||
| Yes | 14 (22.6%) | 14 (18.2%) | 0.671** |
| No | 48 (77.4%) | 63 (81.8%) | |
| Vascular invasion | |||
| Yes | 8 (12.9%) | 8 (10.4%) | 0.399** |
| No | 54 (87.1%) | 69(92.2%) | |
| Perineural invasion | |||
| Yes | 8 (12.9%) | 6 (7.8%) | 0.399** |
| No | 54 (87.1%) | 71(92.2%) | |
| Lymphatic invasion | |||
| Yes | 22 (35.5%) | 21 (27.3%) | 0.357** |
| No | 40 (64.5%) | 56 (72.7%) | |
| Visceral pleural invasion | |||
| PL0 | 46 (74.2%) | 61 (81.3%) | 0.599** |
| PL1 | 1 (1.6%) | 2 (2.7%) | |
| PL2 | 6 (9.7%) | 6 (8.0%) | |
| PL3 | 9 (14.5%) | 6 (8.0%) | |
The asterisks (*, **) indicate results from a Mann-Whitney U test and a Fisher’s exact test, respectively
Fig. 2Frequency of somatic mutations in the tumor samples from the PDX models and patients with LUSC. a OncoPrint of somatic alterations in 38 patients with LUSC and 39 PDX models. The x-axis represents each sample ID and the y-axis represents the frequency of somatic mutations in the genes. The bar graph indicates the number of somatic alterations in each sample. The table indicates the 10 genes with the highest frequencies of somatic mutations. b The Venn diagram represents the shared genes of somatic mutations between the patients with LUSC and PDX models. Bold indicates the genes with the highest frequencies in both the patients and PDX models
Fig. 3Gene expression patterns in normal individuals, patients with LUSC, and PDX models. a A heat map of gene expression patterns in the tissues samples from normal individuals, patients with LUSC, and PDX models. Clustering was made by sample types: C1 for the samples from the patients with LUSC, C2 for the normal tissue samples and several tumor samples from patients with LUSC, and C3 for the tumor samples from the patients with LUSC and PDX models. Orange indicates normal tissue samples, red indicates tumor samples, gold indicates PDX passage 0, pink indicates PDX passage 1, green indicates PDX passage 2, and light green indicates PDX passage 3. The signaling pathway was generated by functional annotation in the Database for Annotation, Visualization and Integrated Discovery (DAVID) website. b Heat map for SP_079 and SP_100 models in the red boxes from A. c DEGs between the patients with LUSC and PDX models. The Venn diagram represents the 10 most upregulated or downregulated genes in the patients with LUSC and PDX models
Fig. 4Distribution of genetic changes in several receptor tyrosine kinase genes of the patients with LUSC and PDX models. WES is the source for the somatic mutations of the genes and WTS for the DEGs. The yellow box indicates shared somatic mutations in the patients with LUSC and PDX models; the red box indicates upregulated genes in both the patients with LUSC and PDX models; and the blue box indicates downregulated genes in both the patients with LUSC and PDX models. The number represents the frequency of somatic mutations or fold changes of the gene
Fig. 5Pathological and genetic concordance of PDX tumors during the passages compared with matched parental patient tumors. a Representative images of H&E-stained and IHC-stained tumor samples from the patients with LUSC and PDX passages 0, 1, and 2. Brown indicates pan-cytokeratin-positive or CD105-positive staining. Scale bars, 200 μm. b Correlation analysis of transcriptome profiles between the patients with LUSC and PDX passages for SP_079 and SP_100 models