Literature DB >> 28331002

Personalized In Vitro and In Vivo Cancer Models to Guide Precision Medicine.

Chantal Pauli1,2,3, Benjamin D Hopkins4, Davide Prandi5, Reid Shaw6, Tarcisio Fedrizzi5, Andrea Sboner1,4,7, Verena Sailer1,2, Michael Augello1,4, Loredana Puca1, Rachele Rosati6, Terra J McNary1, Yelena Churakova1, Cynthia Cheung1, Joanna Triscott1, David Pisapia1,2, Rema Rao1,2, Juan Miguel Mosquera1,2, Brian Robinson1,2, Bishoy M Faltas1,8, Brooke E Emerling4, Vijayakrishna K Gadi9, Brady Bernard6, Olivier Elemento1,4,7, Himisha Beltran1,8, Francesca Demichelis1,5, Christopher J Kemp10, Carla Grandori6, Lewis C Cantley4, Mark A Rubin11,2,4.   

Abstract

Precision medicine is an approach that takes into account the influence of individuals' genes, environment, and lifestyle exposures to tailor interventions. Here, we describe the development of a robust precision cancer care platform that integrates whole-exome sequencing with a living biobank that enables high-throughput drug screens on patient-derived tumor organoids. To date, 56 tumor-derived organoid cultures and 19 patient-derived xenograft (PDX) models have been established from the 769 patients enrolled in an Institutional Review Board-approved clinical trial. Because genomics alone was insufficient to identify therapeutic options for the majority of patients with advanced disease, we used high-throughput drug screening to discover effective treatment strategies. Analysis of tumor-derived cells from four cases, two uterine malignancies and two colon cancers, identified effective drugs and drug combinations that were subsequently validated using 3-D cultures and PDX models. This platform thereby promotes the discovery of novel therapeutic approaches that can be assessed in clinical trials and provides personalized therapeutic options for individual patients where standard clinical options have been exhausted.Significance: Integration of genomic data with drug screening from personalized in vitro and in vivo cancer models guides precision cancer care and fuels next-generation research. Cancer Discov; 7(5); 462-77. ©2017 AACR.See related commentary by Picco and Garnett, p. 456This article is highlighted in the In This Issue feature, p. 443. ©2017 American Association for Cancer Research.

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Year:  2017        PMID: 28331002      PMCID: PMC5413423          DOI: 10.1158/2159-8290.CD-16-1154

Source DB:  PubMed          Journal:  Cancer Discov        ISSN: 2159-8274            Impact factor:   39.397


  42 in total

1.  An emerging role for cytopathology in precision oncology.

Authors:  Chantal Pauli; Loredana Puca; Juan Miguel Mosquera; Brian D Robinson; Himisha Beltran; Mark A Rubin; Rema A Rao
Journal:  Cancer Cytopathol       Date:  2015-12-07       Impact factor: 5.284

2.  Trial watch: phase II and phase III attrition rates 2011-2012.

Authors:  John Arrowsmith; Philip Miller
Journal:  Nat Rev Drug Discov       Date:  2013-08       Impact factor: 84.694

3.  Trial watch: phase III and submission failures: 2007-2010.

Authors:  John Arrowsmith
Journal:  Nat Rev Drug Discov       Date:  2011-02       Impact factor: 84.694

Review 4.  Three-dimensional cell cultures: from molecular mechanisms to clinical applications.

Authors:  W Mueller-Klieser
Journal:  Am J Physiol       Date:  1997-10

Review 5.  Chemical analysis of multicellular tumour spheroids.

Authors:  L E Jamieson; D J Harrison; C J Campbell
Journal:  Analyst       Date:  2015-04-29       Impact factor: 4.616

Review 6.  Clinical Applications of Circulating Tumor Cells and Circulating Tumor DNA as Liquid Biopsy.

Authors:  Catherine Alix-Panabières; Klaus Pantel
Journal:  Cancer Discov       Date:  2016-03-11       Impact factor: 39.397

7.  Genomic changes and gene expression profiles reveal that established glioma cell lines are poorly representative of primary human gliomas.

Authors:  Aiguo Li; Jennifer Walling; Yuri Kotliarov; Angela Center; Mary Ellen Steed; Susie J Ahn; Mark Rosenblum; Tom Mikkelsen; Jean Claude Zenklusen; Howard A Fine
Journal:  Mol Cancer Res       Date:  2008-01-09       Impact factor: 5.852

8.  Prospective derivation of a living organoid biobank of colorectal cancer patients.

Authors:  Marc van de Wetering; Hayley E Francies; Joshua M Francis; Gergana Bounova; Francesco Iorio; Apollo Pronk; Winan van Houdt; Joost van Gorp; Amaro Taylor-Weiner; Lennart Kester; Anne McLaren-Douglas; Joyce Blokker; Sridevi Jaksani; Sina Bartfeld; Richard Volckman; Peter van Sluis; Vivian S W Li; Sara Seepo; Chandra Sekhar Pedamallu; Kristian Cibulskis; Scott L Carter; Aaron McKenna; Michael S Lawrence; Lee Lichtenstein; Chip Stewart; Jan Koster; Rogier Versteeg; Alexander van Oudenaarden; Julio Saez-Rodriguez; Robert G J Vries; Gad Getz; Lodewyk Wessels; Michael R Stratton; Ultan McDermott; Matthew Meyerson; Mathew J Garnett; Hans Clevers
Journal:  Cell       Date:  2015-05-07       Impact factor: 41.582

9.  SNP panel identification assay (SPIA): a genetic-based assay for the identification of cell lines.

Authors:  Francesca Demichelis; Heidi Greulich; Jill A Macoska; Rameen Beroukhim; William R Sellers; Levi Garraway; Mark A Rubin
Journal:  Nucleic Acids Res       Date:  2008-02-27       Impact factor: 16.971

10.  Development and characterisation of a 3D multi-cellular in vitro model of normal human breast: a tool for cancer initiation studies.

Authors:  Claire E Nash; Georgia Mavria; Euan W Baxter; Deborah L Holliday; Darren C Tomlinson; Darren Treanor; Vera Novitskaya; Fedor Berditchevski; Andrew M Hanby; Valerie Speirs
Journal:  Oncotarget       Date:  2015-05-30
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  295 in total

Review 1.  Human Colon Organoids and Other Laboratory Strategies to Enhance Patient Treatment Selection.

Authors:  Katherine A Johnson; Rebecca A DeStefanis; Philip B Emmerich; Patrick T Grogan; Jeremy D Kratz; Sarbjeet K Makkar; Linda Clipson; Dustin A Deming
Journal:  Curr Treat Options Oncol       Date:  2020-04-23

2.  Organoids lead the cancer attack.

Authors:  Amber R Smith; Calvin J Kuo
Journal:  Nat Med       Date:  2017-12-07       Impact factor: 53.440

3.  Cancer: A precision approach to tumour treatment.

Authors:  Rodrigo Dienstmann; Josep Tabernero
Journal:  Nature       Date:  2017-07-19       Impact factor: 49.962

4.  Transcriptional changes associated with in vivo growth of muscle-invasive bladder cancer cell lines in nude mice.

Authors:  Swathi Ramakrishnan; Wendy Huss; Barbara Foster; Joyce Ohm; Jianmin Wang; Gissou Azabdaftari; Kevin H Eng; Anna Woloszynska-Read
Journal:  Am J Clin Exp Urol       Date:  2018-06-15

5.  Generation and Characterization of Patient-Derived Head and Neck, Oral, and Esophageal Cancer Organoids.

Authors:  Tatiana A Karakasheva; Takashi Kijima; Masataka Shimonosono; Hisatsugu Maekawa; Varun Sahu; Joel T Gabre; Ricardo Cruz-Acuña; Veronique Giroux; Veena Sangwan; Kelly A Whelan; Shoji Natsugoe; Angela J Yoon; Elizabeth Philipone; Andres J Klein-Szanto; Gregory G Ginsberg; Gary W Falk; Julian A Abrams; Jianwen Que; Devraj Basu; Lorenzo Ferri; J Alan Diehl; Adam J Bass; Timothy C Wang; Anil K Rustgi; Hiroshi Nakagawa
Journal:  Curr Protoc Stem Cell Biol       Date:  2020-06

6.  Establishment and characterization of an ovarian yolk sac tumor patient-derived xenograft model.

Authors:  Manling Luo; Yuanqiao He; Baogang Xie; Shiyun Li; Fuqiang Gan; Shouhua Zhang; Puying Luo
Journal:  Pediatr Surg Int       Date:  2021-05-24       Impact factor: 1.827

7.  Fluorescence Molecular Tomography for In Vivo Imaging of Glioblastoma Xenografts.

Authors:  Jorge A Benitez; Ciro Zanca; Jianhui Ma; Webster K Cavenee; Frank B Furnari
Journal:  J Vis Exp       Date:  2018-04-26       Impact factor: 1.355

Review 8.  Clinically Applicable Inhibitors Impacting Genome Stability.

Authors:  Anu Prakash; Juan F Garcia-Moreno; James A L Brown; Emer Bourke
Journal:  Molecules       Date:  2018-05-13       Impact factor: 4.411

9.  Obesity-associated Adipose Stromal Cells Promote Breast Cancer Invasion Through Direct Cell Contact and ECM Remodeling.

Authors:  Lu Ling; Jeffrey A Mulligan; Yunxin Ouyang; Adrian A Shimpi; Rebecca M Williams; Garrett F Beeghly; Benjamin D Hopkins; Jason A Spector; Steven G Adie; Claudia Fischbach
Journal:  Adv Funct Mater       Date:  2020-05-04       Impact factor: 18.808

10.  Modelling glioma invasion using 3D bioprinting and scaffold-free 3D culture.

Authors:  Derek M van Pel; Kaori Harada; Dandan Song; Christian C Naus; Wun Chey Sin
Journal:  J Cell Commun Signal       Date:  2018-06-16       Impact factor: 5.782

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