Literature DB >> 32755580

In Vivo Estimates of Liver Metabolic Flux Assessed by 13C-Propionate and 13C-Lactate Are Impacted by Tracer Recycling and Equilibrium Assumptions.

Clinton M Hasenour1, Mohsin Rahim1, Jamey D Young2.   

Abstract

Isotope-based assessment of metabolic flux is achieved through a judicious balance of measurements and assumptions. Recent publications debate the validity of key assumptions used to model stable isotope labeling of liver metabolism in vivo. Here, we examine the controversy surrounding estimates of liver citric acid cycle and gluconeogenesis fluxes using a flexible modeling platform that enables rigorous testing of standard assumptions. Fasted C57BL/6J mice are infused with [13C3]lactate or [13C3]propionate isotopes, and hepatic fluxes are regressed using models with gradually increasing complexity and relaxed assumptions. We confirm that liver pyruvate cycling fluxes are incongruent between different 13C tracers in models with conventional assumptions. When models are expanded to include more labeling measurements and fewer constraining assumptions, however, liver pyruvate cycling is significant, and inconsistencies in hepatic flux estimates using [13C3]lactate and [13C3]propionate isotopes emanate, in part, from peripheral tracer recycling and incomplete isotope equilibration within the citric acid cycle.
Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cori cycling; anaplerosis; citric acid cycle; flux regression; gluconeogenesis; liver metabolism; metabolic flux analysis; pyruvate cycling; pyruvate kinase; stable isotope

Mesh:

Substances:

Year:  2020        PMID: 32755580      PMCID: PMC7451222          DOI: 10.1016/j.celrep.2020.107986

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  37 in total

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2.  INCA: a computational platform for isotopically non-stationary metabolic flux analysis.

Authors:  Jamey D Young
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Authors:  Santhosh Satapati; Nishanth E Sunny; Blanka Kucejova; Xiaorong Fu; Tian Teng He; Andrés Méndez-Lucas; John M Shelton; Jose C Perales; Jeffrey D Browning; Shawn C Burgess
Journal:  J Lipid Res       Date:  2012-04-09       Impact factor: 5.922

4.  Response to burgess.

Authors:  Douglas E Befroy; Richard G Kibbey; Rachel J Perry; Kitt Falk Petersen; Douglas L Rothman; Gerald I Shulman
Journal:  Nat Med       Date:  2015-02       Impact factor: 53.440

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Authors:  Christian M Metallo; Jason L Walther; Gregory Stephanopoulos
Journal:  J Biotechnol       Date:  2009-07-19       Impact factor: 3.307

6.  Tracing hepatic gluconeogenesis relative to citric acid cycle activity in vitro and in vivo. Comparisons in the use of [3-13C]lactate, [2-13C]acetate, and alpha-keto[3-13C]isocaproate.

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7.  Vitamin E does not prevent Western diet-induced NASH progression and increases metabolic flux dysregulation in mice.

Authors:  Clinton M Hasenour; Arion J Kennedy; Tomasz Bednarski; Irina A Trenary; Brandon J Eudy; Robin P da Silva; Kelli L Boyd; Jamey D Young
Journal:  J Lipid Res       Date:  2020-02-21       Impact factor: 5.922

8.  Simultaneous tracers and a unified model of positional and mass isotopomers for quantification of metabolic flux in liver.

Authors:  Stanislaw Deja; Xiaorong Fu; Justin A Fletcher; Blanka Kucejova; Jeffrey D Browning; Jamey D Young; Shawn C Burgess
Journal:  Metab Eng       Date:  2019-12-28       Impact factor: 9.783

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Journal:  J Biol Chem       Date:  1993-12-05       Impact factor: 5.157

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Journal:  Nat Med       Date:  2013-12-08       Impact factor: 53.440

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  9 in total

1.  INCA 2.0: A tool for integrated, dynamic modeling of NMR- and MS-based isotopomer measurements and rigorous metabolic flux analysis.

Authors:  Mohsin Rahim; Mukundan Ragavan; Stanislaw Deja; Matthew E Merritt; Shawn C Burgess; Jamey D Young
Journal:  Metab Eng       Date:  2021-12-26       Impact factor: 9.783

Review 2.  In vivo2H/13C flux analysis in metabolism research.

Authors:  Tomasz K Bednarski; Mohsin Rahim; Jamey D Young
Journal:  Curr Opin Biotechnol       Date:  2021-05-25       Impact factor: 10.279

3.  Oral Gavage Delivery of Stable Isotope Tracer for In Vivo Metabolomics.

Authors:  Holden C Williams; Margaret A Piron; Grant K Nation; Adeline E Walsh; Lyndsay E A Young; Ramon C Sun; Lance A Johnson
Journal:  Metabolites       Date:  2020-12-08

4.  In Vivo Estimation of Ketogenesis Using Metabolic Flux Analysis-Technical Aspects and Model Interpretation.

Authors:  Stanislaw Deja; Blanka Kucejova; Xiaorong Fu; Jeffrey D Browning; Jamey D Young; Shawn Burgess
Journal:  Metabolites       Date:  2021-04-28

5.  Multi-omics-based label-free metabolic flux inference reveals obesity-associated dysregulatory mechanisms in liver glucose metabolism.

Authors:  Saori Uematsu; Satoshi Ohno; Kaori Y Tanaka; Atsushi Hatano; Toshiya Kokaji; Yuki Ito; Hiroyuki Kubota; Ken-Ichi Hironaka; Yutaka Suzuki; Masaki Matsumoto; Keiichi I Nakayama; Akiyoshi Hirayama; Tomoyoshi Soga; Shinya Kuroda
Journal:  iScience       Date:  2022-02-04

6.  13C tracer analysis suggests extensive recycling of endogenous CO2 in vivo.

Authors:  Likun Duan; Daniel E Cooper; Grace Scheidemantle; Jason W Locasale; David G Kirsch; Xiaojing Liu
Journal:  Cancer Metab       Date:  2022-07-07

Review 7.  The [13 C]octanoic acid breath test for gastric emptying quantification: A focus on nutrition and modeling.

Authors:  Johanna von Gerichten; Marwan H Elnesr; Joe E Prollins; Ishanki A De Mel; Alan Flanagan; Jonathan D Johnston; Barbara A Fielding; Michael Short
Journal:  Lipids       Date:  2022-07-07       Impact factor: 1.646

8.  Multitissue 2H/13C flux analysis reveals reciprocal upregulation of renal gluconeogenesis in hepatic PEPCK-C-knockout mice.

Authors:  Mohsin Rahim; Clinton M Hasenour; Tomasz K Bednarski; Curtis C Hughey; David H Wasserman; Jamey D Young
Journal:  JCI Insight       Date:  2021-06-22

9.  An Ethanolic Extract of Artemisia dracunculus L. Enhances the Metabolic Benefits of Exercise in Diet-induced Obese Mice.

Authors:  Timothy D Allerton; Greg M Kowalski; James Stampley; Brian A Irving; John R B Lighton; Z Elizabeth Floyd; Jacqueline M Stephens
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  9 in total

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