Literature DB >> 34048994

In vivo2H/13C flux analysis in metabolism research.

Tomasz K Bednarski1, Mohsin Rahim1, Jamey D Young2.   

Abstract

Identifying the factors and mechanisms that regulate metabolism under normal and diseased states requires methods to quantify metabolic fluxes of live tissues within their physiological milieu. A number of recent developments have expanded the reach and depth of isotope-based in vivo flux analysis, which have in turn challenged existing dogmas in metabolism research. First, minimally invasive techniques of intravenous isotope infusion and sampling have advanced in vivo metabolic tracer studies in animal models and human subjects. Second, recent breakthroughs in analytical instrumentation have expanded the scope of isotope labeling measurements and reduced sample volume requirements. Third, innovative modeling approaches and publicly available software tools have facilitated rigorous analysis of sophisticated experimental designs involving multiple tracers and expansive metabolomics datasets. These developments have enabled comprehensive in vivo quantification of metabolic fluxes in specific tissues and have set the stage for integrated multi-tissue flux assays.
Copyright © 2021 Elsevier Ltd. All rights reserved.

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Year:  2021        PMID: 34048994      PMCID: PMC8530839          DOI: 10.1016/j.copbio.2021.04.005

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   10.279


  64 in total

1.  Determination of the Isotopic Enrichment of 13C- and 2H-Labeled Tracers of Glucose Using High-Resolution Mass Spectrometry: Application to Dual- and Triple-Tracer Studies.

Authors:  Martin Trötzmüller; Alexander Triebl; Amra Ajsic; Jürgen Hartler; Harald Köfeler; Werner Regittnig
Journal:  Anal Chem       Date:  2017-11-09       Impact factor: 6.986

2.  Hepatic ketogenic insufficiency reprograms hepatic glycogen metabolism and the lipidome.

Authors:  D André d'Avignon; Patrycja Puchalska; Baris Ercal; YingJu Chang; Shannon E Martin; Mark J Graham; Gary J Patti; Xianlin Han; Peter A Crawford
Journal:  JCI Insight       Date:  2018-06-21

3.  Monounsaturated fat rapidly induces hepatic gluconeogenesis and whole-body insulin resistance.

Authors:  Theresia Sarabhai; Sabine Kahl; Julia Szendroedi; Daniel F Markgraf; Oana-Patricia Zaharia; Cristina Barosa; Christian Herder; Frithjof Wickrath; Pavel Bobrov; Jong-Hee Hwang; John Griffith Jones; Michael Roden
Journal:  JCI Insight       Date:  2020-05-21

4.  Impaired ketogenesis and increased acetyl-CoA oxidation promote hyperglycemia in human fatty liver.

Authors:  Justin A Fletcher; Stanisław Deja; Santhosh Satapati; Xiaorong Fu; Shawn C Burgess; Jeffrey D Browning
Journal:  JCI Insight       Date:  2019-04-23

5.  Nicotinic acid receptor agonists impair myocardial contractility by energy starvation.

Authors:  William D Watson; Kerstin N Timm; Andrew J Lewis; Jack J J Miller; Yaso Emmanuel; Kieran Clarke; Stefan Neubauer; Damian J Tyler; Oliver J Rider
Journal:  FASEB J       Date:  2020-09-21       Impact factor: 5.191

6.  Evaluation of 13C isotopic tracers for metabolic flux analysis in mammalian cells.

Authors:  Christian M Metallo; Jason L Walther; Gregory Stephanopoulos
Journal:  J Biotechnol       Date:  2009-07-19       Impact factor: 3.307

7.  Increase in signal-to-noise ratio of > 10,000 times in liquid-state NMR.

Authors:  Jan H Ardenkjaer-Larsen; Björn Fridlund; Andreas Gram; Georg Hansson; Lennart Hansson; Mathilde H Lerche; Rolf Servin; Mikkel Thaning; Klaes Golman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-20       Impact factor: 11.205

8.  Vitamin E does not prevent Western diet-induced NASH progression and increases metabolic flux dysregulation in mice.

Authors:  Clinton M Hasenour; Arion J Kennedy; Tomasz Bednarski; Irina A Trenary; Brandon J Eudy; Robin P da Silva; Kelli L Boyd; Jamey D Young
Journal:  J Lipid Res       Date:  2020-02-21       Impact factor: 5.922

9.  Tandem Mass Spectrometry for 13C Metabolic Flux Analysis: Methods and Algorithms Based on EMU Framework.

Authors:  Jungik Choi; Maciek R Antoniewicz
Journal:  Front Microbiol       Date:  2019-01-24       Impact factor: 5.640

10.  Glutamine uptake and utilization of human mesenchymal glioblastoma in orthotopic mouse model.

Authors:  Kristell Oizel; Chendong Yang; Ophelie Renoult; Fabien Gautier; Quyen N Do; Noemie Joalland; Xiaofei Gao; Bookyung Ko; François Vallette; Woo-Ping Ge; François Paris; Ralph J DeBerardinis; Claire Pecqueur
Journal:  Cancer Metab       Date:  2020-08-10
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  3 in total

1.  INCA 2.0: A tool for integrated, dynamic modeling of NMR- and MS-based isotopomer measurements and rigorous metabolic flux analysis.

Authors:  Mohsin Rahim; Mukundan Ragavan; Stanislaw Deja; Matthew E Merritt; Shawn C Burgess; Jamey D Young
Journal:  Metab Eng       Date:  2021-12-26       Impact factor: 9.783

Review 2.  Quantitative metabolic fluxes regulated by trans-omic networks.

Authors:  Satoshi Ohno; Saori Uematsu; Shinya Kuroda
Journal:  Biochem J       Date:  2022-03-31       Impact factor: 3.766

Review 3.  Cardiac Metabolism and Contractile Function in Mice with Reduced Trans-Endothelial Fatty Acid Transport.

Authors:  Tatsuya Iso; Masahiko Kurabayashi
Journal:  Metabolites       Date:  2021-12-19
  3 in total

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