Qiyu He1,2, Tsz N Mok1, Liang Yun3, Chengbo He4, Jieruo Li1, Jinghua Pan1. 1. First Affiliated Hospital of Jinan University, Guangzhou, Guangdong, China. 2. Pediatric Cardiac Surgery Center, National Center for Cardiovascular Disease and Fuwai Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China. 3. First Medical College of Southern Medical University, Guangzhou, Guangdong, China. 4. Heyu Health Technology Co, Ltd. Guangzhou, Guangdong, China.
Abstract
BACKGROUND: A novel coronavirus called SARS-Cov-2, which shared 82% similarity of genome sequence with SARS-CoV, was found in Wuhan in late December of 2019, causing an epidemic outbreak of novel coronavirus-induced pneumonia with dramatically increasing number of cases. Several organs are vulnerable to COVID-19 infection. Acute kidney injury (AKI) was reported in parts of case-studies reporting characteristics of COVID-19 patients. This study aimed at analyzing the potential route of SARS-Cov-2 entry and mechanism at cellular level. METHOD: Single-cell RNA sequencing (scRNA-seq) technology was used to obtain evidence of potential route and ACE2 expressing cell in renal system for underlying pathogenesis of kidney injury caused by COVID-19. The whole process was performed under R with Seurat packages. Canonical marker genes were used to annotate different types of cells. RESULTS: Ten different clusters were identified and ACE2 was mainly expressed in proximal tubule and glomerular parietal epithelial cells. From Gene Ontology (GO) & KEGG enrichment analysis, imbalance of ACE2 expression, renin-angiotensin system (RAS) activation, and neutrophil-related processes were the main issue of COVID-19 leading kidney injury. CONCLUSION: Our study provided the cellular evidence that SARS-Cov-2 invaded human kidney tissue via proximal convoluted tubule, proximal tubule, proximal straight tubule cells, and glomerular parietal cells by means of ACE2-related pathway and used their cellular protease TMPRSS2 for priming.
BACKGROUND: A novel coronavirus called SARS-Cov-2, which shared 82% similarity of genome sequence with SARS-CoV, was found in Wuhan in late December of 2019, causing an epidemic outbreak of novel coronavirus-induced pneumonia with dramatically increasing number of cases. Several organs are vulnerable to COVID-19infection. Acute kidney injury (AKI) was reported in parts of case-studies reporting characteristics of COVID-19patients. This study aimed at analyzing the potential route of SARS-Cov-2 entry and mechanism at cellular level. METHOD: Single-cell RNA sequencing (scRNA-seq) technology was used to obtain evidence of potential route and ACE2 expressing cell in renal system for underlying pathogenesis of kidney injury caused by COVID-19. The whole process was performed under R with Seurat packages. Canonical marker genes were used to annotate different types of cells. RESULTS: Ten different clusters were identified and ACE2 was mainly expressed in proximal tubule and glomerular parietal epithelial cells. From Gene Ontology (GO) & KEGG enrichment analysis, imbalance of ACE2 expression, renin-angiotensin system (RAS) activation, and neutrophil-related processes were the main issue of COVID-19 leading kidney injury. CONCLUSION: Our study provided the cellular evidence that SARS-Cov-2 invaded human kidney tissue via proximal convoluted tubule, proximal tubule, proximal straight tubule cells, and glomerular parietal cells by means of ACE2-related pathway and used their cellular protease TMPRSS2 for priming.
In late December of 2019, a novel coronavirus was found in Wuhan (Chen et al., 2020), causing an epidemic outbreak of novel coronavirus‐induced pneumonia with dramatically increasing number of cases, 76,396 confirmed and 2,348 fatalities in China till 22nd February (She et al., 2020). It has been reported that there was 82% similarity of genome sequence between the SARS‐CoV and the novel coronavirus, which was named after SARS‐Cov‐2 by WHO (Chan et al., 2020; Van de Werf et al., 2012). This theory might indicate that SARS‐Cov‐2 infectedhuman being via the same pathway as SARS‐CoV, ACE2 (OMIM # 300335), and using cellular protease TMPRSS2 (OMIM #602060) for priming (Hoffmann et al., 2020).Apart from acute respiratory distress syndrome (ARDS) due to lung infection, other organs were revealed the potential risk of different human organs vulnerable to SARS‐Cov‐2 infection, such as lung, heart, digestive tract, and male reproductive system (Chai et al., 2020; Wang & Xu, 2020; Zhang et al., 2020; Zou et al., 2020). From a recent 138 hospitalized patients’ study, five acute kidney injury (AKI) (5/138, 3.6%) cases were reported, which might be caused by entry of SARS‐Cov‐2 through ACE2 receptor resulting in kidney injury (Wang et al., 2020). Although previous studies (Mizuiri & Ohashi, 2015) had reported ACE2 is expressed mainly in proximal tubules and glomeruli with the function of synthesis of inactive angiotensin 1–9 (Ang 1–9) from Angiotensin I (Ang I) and catabolism of Ang II to produce angiotensin 1–7 (And 1–7), which reduces vasoconstriction, water retention, salt intake, cell proliferation, reactive oxygen stress, and renoprotective effect. However, as the functional complexity of these structures appears to be associated with different cell types, the expression level, and function of ACE2 in different cell types of human kidney is still unclear.According to the study reporting kidney injury cases, direct effect of virus was suspected (Wang et al., 2020), and Academician Nanshan, Zhong, leader of high‐level steering team dealing with outbreak of COVID‐19 in China, declared that virus of COVID‐19, SARS‐Cov‐2, was separated from patients’ urine sample (Le, Knoedler, & Roberge, 2020). However, the potential route of SARS‐Cov‐2 entry and mechanism of kidney injury base on cellular level is unclear. Consequently, we hypothesize that SARS‐Cov‐2 may enter kidney by ACE2‐related pathway leading kidney injury. In this study, based on public databases, single‐cell RNA sequencing (scRNA‐seq) technology was used to obtain evidences of potential route of SARS‐Cov‐2 entry and underlying pathogenesis of kidney injury in COVID‐19 patients.
MATERIALS AND METHODS
Ethical compliance
This study does not include any participant or animal subjects so that the ethical compliance is not applicable.
Data sources
Gene expression matrix of normal human kidney were obtained from Gene Expression Omnibus (https://www.ncbi.nlm.nih.gov/geo/). scRNA‐seq raw data were obtained from Liao et al. (2020) (GSE131685), containing 23,366 high‐quality cells from three normal human kidney samples.
scRNA‐seq data processing and quality control
Whole process was performed under R (version 3.6.2) and the raw data of gene expression matrix was converted into Seurat object via the Seurat package of R (version 3.1.3). Average was acquired in the situation of duplicated gene expressions and low‐quality cells which had either expressed genes less than 200 or higher than 2500, or mitochondrial gene expression exceeded 30% were excluded for following analysis. Then, we visualized the relationships between the percentage of mitochondrial genes and mRNA reads, and between the number of mRNAs and the reads of mRNA. After that, remaining gene expression matrices were normalized and top 2,000 variable genes were selected for downstream analysis.
Principal component analysis (PCA) and dimensional reduction
Seurat CellCycleScoring function was administered to diminish the error in cell clustering since different phases of cell may interfere the following procedure and cell clustering results. All data were scaled to weight for downstream analysis and RunPCA function was used to determine PCs. By the visualization of JackStraw plot and Elbow plot, top 20 PCs were selected, and RunHarmony was adopted to eliminating batch effect as much as possible. RunUMAP as well as FindNeighbors function with harmony reduction was chosen and FindClusters with resolution of 0.25 was performed to identify different clusters.
Annotation of clusters and identification of ACE2 expression
Marker genes were found via FindAllMarkers function with threshold of 0.25 and annotation was performed based on the canonical marker genes provided by previous studies (Chabardès‐Garonne et al., 2003; Chen, Cheung, Shi, Zhou, & Lu, 2018; Habuka et al., 2014; Lee, Chou, & Knepper, 2015; Nakagawa et al., 2002; Park et al., 2018; Shankland, Smeets, Pippin, & Moeller, 2014; Young et al., 2018). After cell type identification, violin plot as well as feature plot were visualized to identify the ACE2 expression in each cluster. Also, human protein atlas of ACE2 was accessed in order to acquire more evidence ascertaining the expression level of ACE2 in kidney cells (https://www.proteinatlas.org/). In addition, co‐expression analysis was performed with normalized cluster matrices data. Pearson's correlation test was administered between each gene in single‐cell transcriptome and ACE2. Significantly top 200 ACE2 co‐expressed genes (p value <0.05) were collected for following downstream Gene Ontology (GO) as well as Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis (p value <0.05), with the corresponding databases of Carlson M (2019). org.Hs.eg.db, and STRINGI, respectively.
RESULTS
Identification of cell types
After quality control and data normalization among three human kidney samples (baseline characteristics of three samples are documented in Table S1) (Liao et al., 2020), a total of 17,528 RNA features and 23,367 cells were retained for downstream analysis (detail of initial sequencing data is shown in Figure S1). Uniform Manifold Approximation and Projection (UMAP) was used for dimensional reduction for 23,367 high‐quality cells and 10 different clusters were obtained eventually (Figure 1a). In order to reduce interference of cell clustering due to diverse phase in a cell cycle, CellCycleScoring function was used and visualization of no bias induced by cell cycle genes was observed (Figure 1b). According to differential expressed genes in each cluster (Table S2) and canonical marker genes provided by Liao et al. (Table S3), 10 clusters were annotated as proximal convoluted tubule cells, proximal tubule cells, proximal straight tubule cells, glomerular parietal epithelial cells, NK‐T cells, monocytes, distal tubule cells, collecting duct principal cells, B cells, and collecting duct intercalated cells, respectively.
Figure 1
Results from scRNA‐seq analysis. (a) Uniform manifold approximation and projection (UMAP) plot of samples revealing the different clusters of renal cells. (b) UMAP plot indicating different cluster with demonstration of different cell cycles. (c) Expression of ACE2 in different clusters of cells. (d) Violin plot showing the ACE2 expression in different clusters of cells. scRNA, single‐cell RNA sequencing
Results from scRNA‐seq analysis. (a) Uniform manifold approximation and projection (UMAP) plot of samples revealing the different clusters of renal cells. (b) UMAP plot indicating different cluster with demonstration of different cell cycles. (c) Expression of ACE2 in different clusters of cells. (d) Violin plot showing the ACE2 expression in different clusters of cells. scRNA, single‐cell RNA sequencing
Specific expression of ACE2
ACE2 expression level in each cluster was identified by violin plot as well as scatter plot with reduction of UMAP, revealing that ACE2 was predominantly expressed in proximal convoluted tubule cells, proximal tubule cells, proximal straight tubule cells, and glomerular parietal epithelial cells, respectively (Figure 1c,d). The human protein atlas of ACE2 in kidney cells indicated that a majority of ACE2 expression located in proximal convoluted and straight cells (Figure 2). As we discussed in introduction, SARS‐Cov‐2 entered human body via ACE2‐related pathway using cellular protease TMPRSS2 for priming (Hoffmann et al., 2020). We additionally determined the expressing level of TMPRSS2 in each cell cluster and, it was mainly expressed in cluster one to four and seven to eight (Figure S2), which are proximal convoluted tubule, proximal tubule, proximal straight tubule cells and glomerular parietal epithelial cells, distal tubule cells, and collecting duct principal cells, respectively. Therefore, with the intersection of ACE2 expressing level in each cell clusters and corroborative evidence from human protein atlas of ACE2, it furtherly provided substantial evidence to ascertain the potential entry pathway of SARS‐Cov‐2 by invading proximal tubule cells as well as glomerular parietal epithelial cells and, it gave a latent theory of SARS‐Cov‐2 replicating within these cells by using cellular protease TMPRSS2 for priming.
Figure 2
Human protein atlas showing the expression level of ACE2. (Shade of brown indicates the expression level: darker indicates high‐level expression and lighter indicates low level expression)
Human protein atlas showing the expression level of ACE2. (Shade of brown indicates the expression level: darker indicates high‐level expression and lighter indicates low level expression)
GO & KEGG analysis of ACE2 co‐expression genes
Pearson's correlation test was administered between ACE2 and cluster one to four to obtain significantly positive or negative co‐expressed genes (p value <0.05). Top 200 positive and negative co‐expressed genes (top 50 is listed in Table 1) were selected to downstream GO and KEGG analysis (Complete ACE2 co‐expressed genes are documented in Table S4).
Table 1
Positive and negative co‐expression gene of ACE2
Cluster 1 (+)
Cluster (−)
Cluster 2 (+)
Cluster 2 (−)
Cluster 3 (+)
Cluster 3 (−)
Cluster 4 (+)
Cluster 4(−)
TMBIM6
RPS29
MTRNR2L1
RPL21
FAM118A
GSTP1
GPRIN2
EIF1
CLDN2
RPL21
PSAP
MT1H
THSD4
MT1E
SAPCD1‐AS1
HLA‐B
DPEP1
RPS27
MTRNR2L10
RPL41
SLC22A7
TMSB10
GAB1
B2M
NAT8
RPL41
MTRNR2L8
RPS27
GLYATL1
ACTG1
TTLL7
RPL18
HSP90B1
RPL12
TMBIM6
RPS29
DCXR
KIFC3
STS
ARHGDIB
SLC27A2
RPS26
EPCAM
RPL12
ABHD14A
NEAT1
MFSD2A
RPL4
ITM2B
RPS4Y1
MTRNR2L6
RPL39
BTG2
ITGAV
EPDR1
TMSB4X
MTRNR2L1
FXYD2
SLC3A1
MT1G
NRSN2‐AS1
CHMP4A
FARP2
RPS3
SPINT2
MT1G
GAL3ST1
RPL26
ASPHD2
WFDC2
C9orf116
RPL41
APOM
RPL26
CDH16
MT1F
NAT8
MYL6
LINC00526
HLA‐A
CLTRN
MT1H
MTRNR2L11
ATP5F1E
MYH8
PTPN1
SPTBN4
EVL
SLC22A6
UQCRQ
SLC27A2
POLR2L
CYP4A11
MBD4
SBSPON
TRBC2
CYBA
S100A1
PTH1R
MT2A
AZGP1
POLR2J3
ENPP7
TMED10
UQCR11
GMFG
COX7C
MSRB1
SOX4
SH3BGRL2
GADD45A
RARRES3
APOM
RPS4Y1
PCK1
GPAT4
MGAM
STARD9
MIF
ATP1A1
IFITM3
MTRNR2L1
CGNL1
ST6GALNAC3
TPT1
FABP3
PLG
FXYD2
DEPDC1
LRRFIP1
NFASC
FOLR1
S100A11
ERRFI1
UBA52
F11‐AS1
IFITM3
KLHL29
RTN4
NDUFA13
SLC22A6
RPL31
RBP4
PPP1R14B
EMILIN1
SLC3A1
DAB2
BHMT
MT1E
GSTA2
PSMD12
TANC1
SLC13A3
SVIP
CYBA
RPS26
GSTA5
TAX1BP3
PLA2R1
CTBP1‐AS
RPL39
SLC22A11
NDUFB1
SMIM24
ABHD11
PARD3B
MTRNR2L8
ATP5ME
PCK1
UQCR11
CARMN
AC124319.1
COL4A3
CUBN
RPL31
AZGP1
MIR4458HG
ACVR1
RABIF
MYRIP
PSAP
PSME1
PCP2
TMSB10
AKR7A3
CITED4
TNNC1
SERPINI1
RPS8
CYP4F2
RPS2
MIOX
EPS15
RBP1
AQP1
SYF2
GRK4
RPS15A
RTN4
MIEN1
PLOD2
FAM151A
NDUFA1
ADAMTSL5
SKP1
MTRNR2L10
THBS1
APOD
GGH
PCP4
DDC
PPDPF
GPT
RDH11
BASP1
ATP1A1
POLR2L
FBXL6
PDCD5
GADD45A
ARHGAP35
SPOCK1
SLC6A19
RPL36A
CES2
RPLP2
ARHGAP24
GOLGA2
LRP11
SLC22A2
RPL37A
IWS1
APEX1
RGN
WDR83
MAGI2
C18orf54
ATP5MF
ATP6V0B
CCDC58
ARFGEF3
EXOSC7
BGN
SMIM24
COX7C
ADIRF
MACROD1
ALDH2
MBNL1
WT1
TMEM59
NDUFA3
MEPCE
SULT1A1
MPC1
BNC2
CDC42EP2
NACA2
OST4
PDIA3
NME1
ATP1B1
NKAIN4
ZNF385A
CDHR2
NIPSNAP2
ASAH1
IL32
SEC14L2
RNPC3
DCN
FN3K
MICOS10
MTRNR2L12
RPS19
EHMT2‐AS1
C3
RHBDF1
GOLGA8A
TOMM5
NAT8
MTLN
FMO5
EIF4A3
VASN
PLXNA3
HSPA1B
AGT
RPL19
GGH
YPEL3
ZNF423
AUP1
DCDC2
IRX5
RPS28
SLC39A5
SNX6
TPPP3
SLC3A2
OXT
ZNF786
RPL23A
TMEM176B
POLR2L
CA10
APOE
RPL17
PTN
PSMA2
CERCAM
ZSCAN16‐AS1
NPHS1
SARAF
WFDC2
ABHD14A
S100A1
RNF165
MT‐ND4
CLIP3
SPP1
ATP5MPL
SPINT2
CAPG
GC
ANXA4
CXADR
AZGP1
DYNC1I2
SEC23IP
AC026462.3
PLCH2
VPS35
UACA
CD63
MT1E
FN3K
EIF3J
ADIRF
BNIP2
CDK2AP1
AMN
AL359555.4
DHRS7B
PCP4
TEX51
RAB6A
PPP1R14C
MAGEE1
S100A10
ZBTB8A
NOB1
EPHA1‐AS1
MIR29B2CHG
HAAO
MTRNR2L10
RGS14
IMPDH1
ATP5ME
EXTL3‐AS1
PAFAH1B3
CDC42BPB
Top 50 genes of each (Total co‐expression genes could be checked in supplementary file).
“+” indicates positive co‐expressed genes of ACE2.
“−” indicates negative co‐expressed genes of ACE2.
Positive and negative co‐expression gene of ACE2CLIP3Top 50 genes of each (Total co‐expression genes could be checked in supplementary file).“+” indicates positive co‐expressed genes of ACE2.“−” indicates negative co‐expressed genes of ACE2.Regarding to cluster 1, proximal convoluted tubule cells, material transportation processes (e.g. CLN3 [OMIM #607042], SLC7A2 [OMIM #601872], SLC2A6 [OMIM #606813], NPC2 [OMIM #601015]), transportation‐related activity, and cellular components (e.g. PCYOX1 [OMIM #610995], TIMM23B [OMIM #605034], SLC2A6, SLC9A3 [OMIM #182307]), and neutrophil‐mediated immunity (e.g. METTL7A [OMIM #618338], DYNLL1 [OMIM #601562], S100P [OMIM #600614], CST3 [OMIM #604312]) were enriched in positive co‐expressed GO analysis (Figure 3a) and, renin‐angiotensin system (RAS) was revealed significance in KEGG pathway analysis (Figure 3c). For negative co‐expressed genes, viral transcription and expression, mRNA catabolic processes (e.g. RPS29 [OMIM #603633], RPL21 [OMIM #603636], RPS27 [OMIM #603702], RPL41 [OMIM #613315]) were enriched in GO analysis (Figure 3b), and ribosome as well as oxidative phosphorylation pathway were enriched in KEGG analysis (Figure 3d).
Figure 3
GO & KEGG analysis of cluster 1. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 1. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 1. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 1. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 1. GO, Gene Ontology
GO & KEGG analysis of cluster 1. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 1. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 1. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 1. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 1. GO, Gene OntologyIn cluster 2, proximal tubule cells, except material transportation enriched biological processes as cluster 1, neutrophil activation, immune‐related responses and degranulation (e.g. MLEC [OMIM #613802], CTSH [OMIM #116820], PRCP [OMIM #176785], UNC13D [OMIM #608897]) were enriched for positive co‐expression GO terms (Figure 4a), and lysosome‐related pathway was shown in KEGG analysis (Figure 4c). Contrarily, in negative co‐expression enrichment, viral gene transcription, expression, and translational initiation were dominant in GO analysis (e.g. RPL21, RPL41, RPS27, RPS29) (Figure 4b), while in KEGG analysis, ribosome‐related pathway was enriched (Figure 4d).
Figure 4
GO & KEGG analysis of cluster 2. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 2. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 2. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 2. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 2. GO, Gene Ontology
GO & KEGG analysis of cluster 2. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 2. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 2. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 2. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 2. GO, Gene OntologyWhen it comes to proximal straight tubule cells of cluster 3, material catabolic and metabolic process (e.g. AGXT2 [OMIM #612471], ASRGL1 [OMIM #609212], HPD [OMIM #609695], HYAL1 [OMIM #607071]) were predominantly enriched GO terms in top 200 positive co‐expressed genes (Figure 5a) with peroxisome proliferators‐activated receptors (PPAR) signaling pathway KEGG analysis shown in Figure 5c. Nevertheless, for negative co‐expressed genes, RNA‐related catabolic processes and regulation (e.g. PSMD12 [OMIM #604450], EXOSC7 [OMIM #606488], EIF4A3 [OMIM #608546], PSMD13 [OMIM #603481]) were mainly enriched for GO terms (Figure 5b) while there was no significant KEGG pathway could be obtained.
Figure 5
GO & KEGG analysis of cluster 3. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 3. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 3. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 3. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 3. GO, Gene Ontology
GO & KEGG analysis of cluster 3. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 3. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 3. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 3. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 3. GO, Gene OntologyFor glomerular parietal epithelial cells of cluster 4, renal cell differentiation, urogenital system development, and extracellular structure organization (e.g. CDKN1C [OMIM #600856], BMP7 [OMIM #112267], MME [OMIM #120520], LAMA5 [OMIM #601033])‐related GO terms were enriched among positive co‐expressed genes (Figure 6a) and, protein digestion as well as absorption pathway were enriched for KEGG‐related analysis (Figure 6c). Conversely, among negative co‐expressed genes GO analysis, translational‐related processes and antigen presentation processes (e.g. EIF1 [OMIM #300186], RPL18 [OMIM #604179], HLA‐B [OMIM #142830], B2 M [OMIM #109700], HLA‐A [OMIM #142800]) were enriched GO terms (Figure 6b), while ribosome and viral infection‐related pathways were enriched in KEGG analysis (Figure 6d).
Figure 6
GO & KEGG analysis of cluster 4. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 4. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 4. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 4. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 4. GO, Gene Ontology
GO & KEGG analysis of cluster 4. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 4. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 4. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 4. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 4. GO, Gene Ontology
DISCUSSION
According to previous study (Chiu, 2003; Yeung et al., 2016), two categories of coronavirus, SARS‐CoV and MERS‐CoV had been reported to damaged kidney through immunocompromise and induced apoptosis of renal cells. Although the exact evidence for kidney injury caused by COVID‐19 has not been estimated, several infectedpatients’ studies revealed the potential risk of kidney vulnerable to be damaged due to SARS‐Cov‐2 virus direct effect. Wang et al. (2020) reported five AKI cases in total of 138 patients, Huang et al. (2020) reported three AKI cases which were all in intensive condition, Guan et al. (2020) reported six AKI patients among total of 1,099 patients, and three patients with creatinine level greater than 133 μmol/L, indicating suspecting kidney injury, in total of 62 patients outside Wuhan were reported by Xu et al. (2020). Hypothesis of virus direct effect resulting in kidney damage was suspected within the abovementioned case‐studies and, more importantly, based on our study results of scRNA‐seq in human kidney, potential route for COVID‐19 leading kidney damage via ACE2 was estimated.ACE2 participates in the synthesis and catabolism of Ang II that induces inflammation, cell growth, mitogenesis, apoptosis, and regulates the gene expression of bioactive substances, all of which might exacerbate to renal tissue injury. Moreover, ACE2 inhibition was reported to be associated with increasing albumin excretion and worsen glomerular injury (Soler, Wysocki, & Batlle, 2008), which was confirmed by an experimental study using exogenous human recombinant ACE2 to slow the progression of chronic kidney disease by reducing in albumin excretion (Oudit et al., 2010). As we known, catabolism of Ang II to produce Ang 1–7 is the main function of ACE2, while renal damage or disorder may happen with increasing Ang II (Ruiz‐Ortega et al., 2006). Thus, the imbalance expression level of ACE2 accelerates the renal damage.Furthermore, RAS could be a potential pathway influencing on renal injury progression via mitogen‐active protein kinase (MAPK)‐mediated apoptosis, NF‐κB‐mediated inflammation, and redox imbalance promoting oxidative stress (Gnudi, Coward, & Long, 2016; Newsholme, Cruzat, Keane, Carlessi, & de Bittencourt, 2016; Sharma, Anders, & Gaikwad, 2019). A literature speculated that compromised kidney perfusion and altered intrarenal hemodynamics balance attributed to systemic and intrarenal RAS activation may be the critical pathogenic factors (Matejovic et al., 2016). From our GO & KEGG analysis, RAS was a significant pathway in ACE2 co‐expressed gene enrichment, which might indicate one of the potential mechanisms of COVID‐19 damage to kidney. Interestingly, neutrophil‐mediated immunity was detected in almost positive co‐expressed genes analysis. SARS‐Cov‐2 invasion to kidney via ACE2 may interfere immunity response, which was a underlying mechanism similar to SARS‐CoV damage to kidney by immunocompromise (Chiu, 2003). Glomerulus was also a potential target for SARS‐Cov‐2 according to our scRNA‐seq data, and the GO enrichment of glomerulus was associated with development, such as glomerulus development, nephron development, even though kidney development, which may be a pathogenic factor for the exacerbation of patient kidney's status.To the best of our knowledge, no specific medication could be used to against COVID‐19 but symptomatic treatment would be the predominant strategy. Occurrence of AKI is the most frequent renal‐related complication in COVID‐19 patients, which increases the risk factor for mortality. From above discussion, dealing with ACE2 expression imbalance and RAS activation would be the main issues. Recombinant ACE2 was reported to be effective in slowing the progression of kidney disease by reducing albumin excretion and modulating RAS depressor arm (AT2R, ACE2, Ang 1–7) by ACE2 activator or AT2R agonist might protect the kidney from renal injury (Oudit et al., 2010; Sharma, Malek, Mulay, & Gaikwad, 2019), which may provide potential clues for clinicians encountering COVID‐19 patients, especially complicated with kidney injury. However, the abovementioned mechanism of kidney injury in COVID‐19 infection should be verified in experiment under precise experimental design.
CONCLUSION
This study speculated that SARS‐Cov‐2 invaded proximal convoluted tubule, proximal tubule, proximal straight tubule cells, and glomerular parietal epithelial cells by means of ACE2 receptor and damaging kidney tissue through ACE2 imbalance and RAS activation, which offers substantial clues for clinical practice dealing with renal‐related complications caused by COVID‐19.
CONFLICT OF INTEREST
All authors declared no conflicts of interest to disclose.
AUTHOR CONTRIBUTIONS
The detailed contributions of each authors are listed as followed: Qiyu He: conceptualization, methodology, data analysis, manuscript writing. Tsz Ngai Mok: methodology, data analysis, manuscript writing. Liang Yun: investigation. Chengbo He: technical support of data processing. Jieruo Li: supervision, conceptualization, professional suggestion and revision. Jinghua Pan: supervision, conceptualization, professional suggestion and revision.Fig S1Click here for additional data file.Fig S2Click here for additional data file.Table S1Click here for additional data file.Table S2Click here for additional data file.Table S3Click here for additional data file.Table S4Click here for additional data file.
Authors: Masato Habuka; Linn Fagerberg; Björn M Hallström; Caroline Kampf; Karolina Edlund; Åsa Sivertsson; Tadashi Yamamoto; Fredrik Pontén; Mathias Uhlén; Jacob Odeberg Journal: PLoS One Date: 2014-12-31 Impact factor: 3.240
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