Literature DB >> 32744436

Single-cell RNA sequencing analysis of human kidney reveals the presence of ACE2 receptor: A potential pathway of COVID-19 infection.

Qiyu He1,2, Tsz N Mok1, Liang Yun3, Chengbo He4, Jieruo Li1, Jinghua Pan1.   

Abstract

BACKGROUND: A novel coronavirus called SARS-Cov-2, which shared 82% similarity of genome sequence with SARS-CoV, was found in Wuhan in late December of 2019, causing an epidemic outbreak of novel coronavirus-induced pneumonia with dramatically increasing number of cases. Several organs are vulnerable to COVID-19 infection. Acute kidney injury (AKI) was reported in parts of case-studies reporting characteristics of COVID-19 patients. This study aimed at analyzing the potential route of SARS-Cov-2 entry and mechanism at cellular level.
METHOD: Single-cell RNA sequencing (scRNA-seq) technology was used to obtain evidence of potential route and ACE2 expressing cell in renal system for underlying pathogenesis of kidney injury caused by COVID-19. The whole process was performed under R with Seurat packages. Canonical marker genes were used to annotate different types of cells.
RESULTS: Ten different clusters were identified and ACE2 was mainly expressed in proximal tubule and glomerular parietal epithelial cells. From Gene Ontology (GO) & KEGG enrichment analysis, imbalance of ACE2 expression, renin-angiotensin system (RAS) activation, and neutrophil-related processes were the main issue of COVID-19 leading kidney injury.
CONCLUSION: Our study provided the cellular evidence that SARS-Cov-2 invaded human kidney tissue via proximal convoluted tubule, proximal tubule, proximal straight tubule cells, and glomerular parietal cells by means of ACE2-related pathway and used their cellular protease TMPRSS2 for priming.
© 2020 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC.

Entities:  

Keywords:  ACE2; COVID-19; SARS-Cov-2; kidney; scRNA-seq

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Substances:

Year:  2020        PMID: 32744436      PMCID: PMC7435545          DOI: 10.1002/mgg3.1442

Source DB:  PubMed          Journal:  Mol Genet Genomic Med        ISSN: 2324-9269            Impact factor:   2.183


INTRODUCTION

In late December of 2019, a novel coronavirus was found in Wuhan (Chen et al., 2020), causing an epidemic outbreak of novel coronavirus‐induced pneumonia with dramatically increasing number of cases, 76,396 confirmed and 2,348 fatalities in China till 22nd February (She et al., 2020). It has been reported that there was 82% similarity of genome sequence between the SARS‐CoV and the novel coronavirus, which was named after SARS‐Cov‐2 by WHO (Chan et al., 2020; Van de Werf et al., 2012). This theory might indicate that SARS‐Cov‐2 infected human being via the same pathway as SARS‐CoV, ACE2 (OMIM # 300335), and using cellular protease TMPRSS2 (OMIM #602060) for priming (Hoffmann et al., 2020). Apart from acute respiratory distress syndrome (ARDS) due to lung infection, other organs were revealed the potential risk of different human organs vulnerable to SARS‐Cov‐2 infection, such as lung, heart, digestive tract, and male reproductive system (Chai et al., 2020; Wang & Xu, 2020; Zhang et al., 2020; Zou et al., 2020). From a recent 138 hospitalized patients’ study, five acute kidney injury (AKI) (5/138, 3.6%) cases were reported, which might be caused by entry of SARS‐Cov‐2 through ACE2 receptor resulting in kidney injury (Wang et al., 2020). Although previous studies (Mizuiri & Ohashi, 2015) had reported ACE2 is expressed mainly in proximal tubules and glomeruli with the function of synthesis of inactive angiotensin 1–9 (Ang 1–9) from Angiotensin I (Ang I) and catabolism of Ang II to produce angiotensin 1–7 (And 1–7), which reduces vasoconstriction, water retention, salt intake, cell proliferation, reactive oxygen stress, and renoprotective effect. However, as the functional complexity of these structures appears to be associated with different cell types, the expression level, and function of ACE2 in different cell types of human kidney is still unclear. According to the study reporting kidney injury cases, direct effect of virus was suspected (Wang et al., 2020), and Academician Nanshan, Zhong, leader of high‐level steering team dealing with outbreak of COVID‐19 in China, declared that virus of COVID‐19, SARS‐Cov‐2, was separated from patients’ urine sample (Le, Knoedler, & Roberge, 2020). However, the potential route of SARS‐Cov‐2 entry and mechanism of kidney injury base on cellular level is unclear. Consequently, we hypothesize that SARS‐Cov‐2 may enter kidney by ACE2‐related pathway leading kidney injury. In this study, based on public databases, single‐cell RNA sequencing (scRNA‐seq) technology was used to obtain evidences of potential route of SARS‐Cov‐2 entry and underlying pathogenesis of kidney injury in COVID‐19 patients.

MATERIALS AND METHODS

Ethical compliance

This study does not include any participant or animal subjects so that the ethical compliance is not applicable.

Data sources

Gene expression matrix of normal human kidney were obtained from Gene Expression Omnibus (https://www.ncbi.nlm.nih.gov/geo/). scRNA‐seq raw data were obtained from Liao et al. (2020) (GSE131685), containing 23,366 high‐quality cells from three normal human kidney samples.

scRNA‐seq data processing and quality control

Whole process was performed under R (version 3.6.2) and the raw data of gene expression matrix was converted into Seurat object via the Seurat package of R (version 3.1.3). Average was acquired in the situation of duplicated gene expressions and low‐quality cells which had either expressed genes less than 200 or higher than 2500, or mitochondrial gene expression exceeded 30% were excluded for following analysis. Then, we visualized the relationships between the percentage of mitochondrial genes and mRNA reads, and between the number of mRNAs and the reads of mRNA. After that, remaining gene expression matrices were normalized and top 2,000 variable genes were selected for downstream analysis.

Principal component analysis (PCA) and dimensional reduction

Seurat CellCycleScoring function was administered to diminish the error in cell clustering since different phases of cell may interfere the following procedure and cell clustering results. All data were scaled to weight for downstream analysis and RunPCA function was used to determine PCs. By the visualization of JackStraw plot and Elbow plot, top 20 PCs were selected, and RunHarmony was adopted to eliminating batch effect as much as possible. RunUMAP as well as FindNeighbors function with harmony reduction was chosen and FindClusters with resolution of 0.25 was performed to identify different clusters.

Annotation of clusters and identification of ACE2 expression

Marker genes were found via FindAllMarkers function with threshold of 0.25 and annotation was performed based on the canonical marker genes provided by previous studies (Chabardès‐Garonne et al., 2003; Chen, Cheung, Shi, Zhou, & Lu, 2018; Habuka et al., 2014; Lee, Chou, & Knepper, 2015; Nakagawa et al., 2002; Park et al., 2018; Shankland, Smeets, Pippin, & Moeller, 2014; Young et al., 2018). After cell type identification, violin plot as well as feature plot were visualized to identify the ACE2 expression in each cluster. Also, human protein atlas of ACE2 was accessed in order to acquire more evidence ascertaining the expression level of ACE2 in kidney cells (https://www.proteinatlas.org/). In addition, co‐expression analysis was performed with normalized cluster matrices data. Pearson's correlation test was administered between each gene in single‐cell transcriptome and ACE2. Significantly top 200 ACE2 co‐expressed genes (p value <0.05) were collected for following downstream Gene Ontology (GO) as well as Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis (p value <0.05), with the corresponding databases of Carlson M (2019). org.Hs.eg.db, and STRINGI, respectively.

RESULTS

Identification of cell types

After quality control and data normalization among three human kidney samples (baseline characteristics of three samples are documented in Table S1) (Liao et al., 2020), a total of 17,528 RNA features and 23,367 cells were retained for downstream analysis (detail of initial sequencing data is shown in Figure S1). Uniform Manifold Approximation and Projection (UMAP) was used for dimensional reduction for 23,367 high‐quality cells and 10 different clusters were obtained eventually (Figure 1a). In order to reduce interference of cell clustering due to diverse phase in a cell cycle, CellCycleScoring function was used and visualization of no bias induced by cell cycle genes was observed (Figure 1b). According to differential expressed genes in each cluster (Table S2) and canonical marker genes provided by Liao et al. (Table S3), 10 clusters were annotated as proximal convoluted tubule cells, proximal tubule cells, proximal straight tubule cells, glomerular parietal epithelial cells, NK‐T cells, monocytes, distal tubule cells, collecting duct principal cells, B cells, and collecting duct intercalated cells, respectively.
Figure 1

Results from scRNA‐seq analysis. (a) Uniform manifold approximation and projection (UMAP) plot of samples revealing the different clusters of renal cells. (b) UMAP plot indicating different cluster with demonstration of different cell cycles. (c) Expression of ACE2 in different clusters of cells. (d) Violin plot showing the ACE2 expression in different clusters of cells. scRNA, single‐cell RNA sequencing

Results from scRNA‐seq analysis. (a) Uniform manifold approximation and projection (UMAP) plot of samples revealing the different clusters of renal cells. (b) UMAP plot indicating different cluster with demonstration of different cell cycles. (c) Expression of ACE2 in different clusters of cells. (d) Violin plot showing the ACE2 expression in different clusters of cells. scRNA, single‐cell RNA sequencing

Specific expression of ACE2

ACE2 expression level in each cluster was identified by violin plot as well as scatter plot with reduction of UMAP, revealing that ACE2 was predominantly expressed in proximal convoluted tubule cells, proximal tubule cells, proximal straight tubule cells, and glomerular parietal epithelial cells, respectively (Figure 1c,d). The human protein atlas of ACE2 in kidney cells indicated that a majority of ACE2 expression located in proximal convoluted and straight cells (Figure 2). As we discussed in introduction, SARS‐Cov‐2 entered human body via ACE2‐related pathway using cellular protease TMPRSS2 for priming (Hoffmann et al., 2020). We additionally determined the expressing level of TMPRSS2 in each cell cluster and, it was mainly expressed in cluster one to four and seven to eight (Figure S2), which are proximal convoluted tubule, proximal tubule, proximal straight tubule cells and glomerular parietal epithelial cells, distal tubule cells, and collecting duct principal cells, respectively. Therefore, with the intersection of ACE2 expressing level in each cell clusters and corroborative evidence from human protein atlas of ACE2, it furtherly provided substantial evidence to ascertain the potential entry pathway of SARS‐Cov‐2 by invading proximal tubule cells as well as glomerular parietal epithelial cells and, it gave a latent theory of SARS‐Cov‐2 replicating within these cells by using cellular protease TMPRSS2 for priming.
Figure 2

Human protein atlas showing the expression level of ACE2. (Shade of brown indicates the expression level: darker indicates high‐level expression and lighter indicates low level expression)

Human protein atlas showing the expression level of ACE2. (Shade of brown indicates the expression level: darker indicates high‐level expression and lighter indicates low level expression)

GO & KEGG analysis of ACE2 co‐expression genes

Pearson's correlation test was administered between ACE2 and cluster one to four to obtain significantly positive or negative co‐expressed genes (p value <0.05). Top 200 positive and negative co‐expressed genes (top 50 is listed in Table 1) were selected to downstream GO and KEGG analysis (Complete ACE2 co‐expressed genes are documented in Table S4).
Table 1

Positive and negative co‐expression gene of ACE2

Cluster 1 (+)Cluster (−)Cluster 2 (+)Cluster 2 (−)Cluster 3 (+)Cluster 3 (−)Cluster 4 (+)Cluster 4(−)
TMBIM6RPS29MTRNR2L1RPL21FAM118AGSTP1GPRIN2EIF1
CLDN2RPL21PSAPMT1HTHSD4MT1ESAPCD1‐AS1HLA‐B
DPEP1RPS27MTRNR2L10RPL41SLC22A7TMSB10GAB1B2M
NAT8RPL41MTRNR2L8RPS27GLYATL1ACTG1TTLL7RPL18
HSP90B1RPL12TMBIM6RPS29DCXRKIFC3STSARHGDIB
SLC27A2RPS26EPCAMRPL12ABHD14ANEAT1MFSD2ARPL4
ITM2BRPS4Y1MTRNR2L6RPL39BTG2ITGAVEPDR1TMSB4X
MTRNR2L1FXYD2SLC3A1MT1GNRSN2‐AS1CHMP4AFARP2RPS3
SPINT2MT1GGAL3ST1RPL26ASPHD2WFDC2C9orf116RPL41
APOMRPL26CDH16MT1FNAT8MYL6LINC00526HLA‐A
CLTRNMT1HMTRNR2L11ATP5F1EMYH8PTPN1SPTBN4EVL
SLC22A6UQCRQSLC27A2POLR2LCYP4A11MBD4SBSPONTRBC2
CYBAS100A1PTH1RMT2AAZGP1POLR2J3ENPP7
TMED10UQCR11GMFGCOX7CMSRB1SOX4SH3BGRL2
GADD45ARARRES3APOMRPS4Y1PCK1GPAT4MGAM
STARD9MIFATP1A1IFITM3MTRNR2L1CGNL1ST6GALNAC3
TPT1FABP3PLGFXYD2DEPDC1LRRFIP1NFASC
FOLR1S100A11ERRFI1UBA52F11‐AS1IFITM3KLHL29
RTN4NDUFA13SLC22A6RPL31RBP4PPP1R14BEMILIN1
SLC3A1DAB2BHMTMT1EGSTA2PSMD12TANC1
SLC13A3SVIPCYBARPS26GSTA5TAX1BP3PLA2R1
CTBP1‐ASRPL39SLC22A11NDUFB1SMIM24ABHD11PARD3B
MTRNR2L8ATP5MEPCK1UQCR11CARMNAC124319.1COL4A3
CUBNRPL31AZGP1MIR4458HGACVR1RABIFMYRIP
PSAPPSME1PCP2TMSB10AKR7A3CITED4TNNC1
SERPINI1RPS8CYP4F2RPS2MIOXEPS15RBP1
AQP1SYF2GRK4RPS15ARTN4MIEN1PLOD2
FAM151ANDUFA1ADAMTSL5SKP1MTRNR2L10THBS1APOD
GGHPCP4DDCPPDPFGPTRDH11BASP1
ATP1A1POLR2LFBXL6PDCD5GADD45AARHGAP35SPOCK1
SLC6A19RPL36ACES2RPLP2ARHGAP24GOLGA2LRP11
SLC22A2RPL37AIWS1APEX1RGNWDR83MAGI2
C18orf54ATP5MFATP6V0BCCDC58ARFGEF3EXOSC7BGN
SMIM24COX7CADIRFMACROD1ALDH2MBNL1WT1
TMEM59NDUFA3MEPCESULT1A1MPC1BNC2CDC42EP2
NACA2OST4PDIA3NME1ATP1B1NKAIN4ZNF385A
CDHR2NIPSNAP2ASAH1IL32SEC14L2RNPC3DCN
FN3KMICOS10MTRNR2L12RPS19EHMT2‐AS1C3RHBDF1
GOLGA8ATOMM5NAT8MTLNFMO5EIF4A3VASN
PLXNA3HSPA1BAGTRPL19GGHYPEL3ZNF423
AUP1DCDC2IRX5RPS28SLC39A5SNX6TPPP3
SLC3A2OXTZNF786RPL23ATMEM176BPOLR2LCA10
APOERPL17PTNPSMA2CERCAMZSCAN16‐AS1NPHS1
SARAFWFDC2ABHD14AS100A1RNF165MT‐ND4

CLIP3

SPP1ATP5MPLSPINT2CAPGGCANXA4CXADR
AZGP1DYNC1I2SEC23IPAC026462.3PLCH2VPS35UACA
CD63MT1EFN3KEIF3JADIRFBNIP2CDK2AP1
AMNAL359555.4DHRS7BPCP4TEX51RAB6APPP1R14C
MAGEE1S100A10ZBTB8ANOB1EPHA1‐AS1MIR29B2CHGHAAO
MTRNR2L10RGS14IMPDH1ATP5MEEXTL3‐AS1PAFAH1B3CDC42BPB

Top 50 genes of each (Total co‐expression genes could be checked in supplementary file).

“+” indicates positive co‐expressed genes of ACE2.

“−” indicates negative co‐expressed genes of ACE2.

Positive and negative co‐expression gene of ACE2 CLIP3 Top 50 genes of each (Total co‐expression genes could be checked in supplementary file). “+” indicates positive co‐expressed genes of ACE2. “−” indicates negative co‐expressed genes of ACE2. Regarding to cluster 1, proximal convoluted tubule cells, material transportation processes (e.g. CLN3 [OMIM #607042], SLC7A2 [OMIM #601872], SLC2A6 [OMIM #606813], NPC2 [OMIM #601015]), transportation‐related activity, and cellular components (e.g. PCYOX1 [OMIM #610995], TIMM23B [OMIM #605034], SLC2A6, SLC9A3 [OMIM #182307]), and neutrophil‐mediated immunity (e.g. METTL7A [OMIM #618338], DYNLL1 [OMIM #601562], S100P [OMIM #600614], CST3 [OMIM #604312]) were enriched in positive co‐expressed GO analysis (Figure 3a) and, renin‐angiotensin system (RAS) was revealed significance in KEGG pathway analysis (Figure 3c). For negative co‐expressed genes, viral transcription and expression, mRNA catabolic processes (e.g. RPS29 [OMIM #603633], RPL21 [OMIM #603636], RPS27 [OMIM #603702], RPL41 [OMIM #613315]) were enriched in GO analysis (Figure 3b), and ribosome as well as oxidative phosphorylation pathway were enriched in KEGG analysis (Figure 3d).
Figure 3

GO & KEGG analysis of cluster 1. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 1. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 1. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 1. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 1. GO, Gene Ontology

GO & KEGG analysis of cluster 1. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 1. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 1. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 1. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 1. GO, Gene Ontology In cluster 2, proximal tubule cells, except material transportation enriched biological processes as cluster 1, neutrophil activation, immune‐related responses and degranulation (e.g. MLEC [OMIM #613802], CTSH [OMIM #116820], PRCP [OMIM #176785], UNC13D [OMIM #608897]) were enriched for positive co‐expression GO terms (Figure 4a), and lysosome‐related pathway was shown in KEGG analysis (Figure 4c). Contrarily, in negative co‐expression enrichment, viral gene transcription, expression, and translational initiation were dominant in GO analysis (e.g. RPL21, RPL41, RPS27, RPS29) (Figure 4b), while in KEGG analysis, ribosome‐related pathway was enriched (Figure 4d).
Figure 4

GO & KEGG analysis of cluster 2. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 2. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 2. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 2. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 2. GO, Gene Ontology

GO & KEGG analysis of cluster 2. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 2. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 2. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 2. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 2. GO, Gene Ontology When it comes to proximal straight tubule cells of cluster 3, material catabolic and metabolic process (e.g. AGXT2 [OMIM #612471], ASRGL1 [OMIM #609212], HPD [OMIM #609695], HYAL1 [OMIM #607071]) were predominantly enriched GO terms in top 200 positive co‐expressed genes (Figure 5a) with peroxisome proliferators‐activated receptors (PPAR) signaling pathway KEGG analysis shown in Figure 5c. Nevertheless, for negative co‐expressed genes, RNA‐related catabolic processes and regulation (e.g. PSMD12 [OMIM #604450], EXOSC7 [OMIM #606488], EIF4A3 [OMIM #608546], PSMD13 [OMIM #603481]) were mainly enriched for GO terms (Figure 5b) while there was no significant KEGG pathway could be obtained.
Figure 5

GO & KEGG analysis of cluster 3. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 3. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 3. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 3. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 3. GO, Gene Ontology

GO & KEGG analysis of cluster 3. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 3. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 3. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 3. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 3. GO, Gene Ontology For glomerular parietal epithelial cells of cluster 4, renal cell differentiation, urogenital system development, and extracellular structure organization (e.g. CDKN1C [OMIM #600856], BMP7 [OMIM #112267], MME [OMIM #120520], LAMA5 [OMIM #601033])‐related GO terms were enriched among positive co‐expressed genes (Figure 6a) and, protein digestion as well as absorption pathway were enriched for KEGG‐related analysis (Figure 6c). Conversely, among negative co‐expressed genes GO analysis, translational‐related processes and antigen presentation processes (e.g. EIF1 [OMIM #300186], RPL18 [OMIM #604179], HLA‐B [OMIM #142830], B2 M [OMIM #109700], HLA‐A [OMIM #142800]) were enriched GO terms (Figure 6b), while ribosome and viral infection‐related pathways were enriched in KEGG analysis (Figure 6d).
Figure 6

GO & KEGG analysis of cluster 4. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 4. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 4. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 4. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 4. GO, Gene Ontology

GO & KEGG analysis of cluster 4. (a) GO analysis of positive top 200 co‐expression genes of ACE2 in cluster 4. (b) GO analysis of negative co‐expression genes of ACE2 in cluster 4. (c) KEGG analysis of positive top 200 co‐expression genes of ACE2 in cluster 4. (d) KEGG analysis of negative top 200 co‐expression genes of ACE2 in cluster 4. GO, Gene Ontology

DISCUSSION

According to previous study (Chiu, 2003; Yeung et al., 2016), two categories of coronavirus, SARS‐CoV and MERS‐CoV had been reported to damaged kidney through immunocompromise and induced apoptosis of renal cells. Although the exact evidence for kidney injury caused by COVID‐19 has not been estimated, several infected patients’ studies revealed the potential risk of kidney vulnerable to be damaged due to SARS‐Cov‐2 virus direct effect. Wang et al. (2020) reported five AKI cases in total of 138 patients, Huang et al. (2020) reported three AKI cases which were all in intensive condition, Guan et al. (2020) reported six AKI patients among total of 1,099 patients, and three patients with creatinine level greater than 133 μmol/L, indicating suspecting kidney injury, in total of 62 patients outside Wuhan were reported by Xu et al. (2020). Hypothesis of virus direct effect resulting in kidney damage was suspected within the abovementioned case‐studies and, more importantly, based on our study results of scRNA‐seq in human kidney, potential route for COVID‐19 leading kidney damage via ACE2 was estimated. ACE2 participates in the synthesis and catabolism of Ang II that induces inflammation, cell growth, mitogenesis, apoptosis, and regulates the gene expression of bioactive substances, all of which might exacerbate to renal tissue injury. Moreover, ACE2 inhibition was reported to be associated with increasing albumin excretion and worsen glomerular injury (Soler, Wysocki, & Batlle, 2008), which was confirmed by an experimental study using exogenous human recombinant ACE2 to slow the progression of chronic kidney disease by reducing in albumin excretion (Oudit et al., 2010). As we known, catabolism of Ang II to produce Ang 1–7 is the main function of ACE2, while renal damage or disorder may happen with increasing Ang II (Ruiz‐Ortega et al., 2006). Thus, the imbalance expression level of ACE2 accelerates the renal damage. Furthermore, RAS could be a potential pathway influencing on renal injury progression via mitogen‐active protein kinase (MAPK)‐mediated apoptosis, NF‐κB‐mediated inflammation, and redox imbalance promoting oxidative stress (Gnudi, Coward, & Long, 2016; Newsholme, Cruzat, Keane, Carlessi, & de Bittencourt, 2016; Sharma, Anders, & Gaikwad, 2019). A literature speculated that compromised kidney perfusion and altered intrarenal hemodynamics balance attributed to systemic and intrarenal RAS activation may be the critical pathogenic factors (Matejovic et al., 2016). From our GO & KEGG analysis, RAS was a significant pathway in ACE2 co‐expressed gene enrichment, which might indicate one of the potential mechanisms of COVID‐19 damage to kidney. Interestingly, neutrophil‐mediated immunity was detected in almost positive co‐expressed genes analysis. SARS‐Cov‐2 invasion to kidney via ACE2 may interfere immunity response, which was a underlying mechanism similar to SARS‐CoV damage to kidney by immunocompromise (Chiu, 2003). Glomerulus was also a potential target for SARS‐Cov‐2 according to our scRNA‐seq data, and the GO enrichment of glomerulus was associated with development, such as glomerulus development, nephron development, even though kidney development, which may be a pathogenic factor for the exacerbation of patient kidney's status. To the best of our knowledge, no specific medication could be used to against COVID‐19 but symptomatic treatment would be the predominant strategy. Occurrence of AKI is the most frequent renal‐related complication in COVID‐19 patients, which increases the risk factor for mortality. From above discussion, dealing with ACE2 expression imbalance and RAS activation would be the main issues. Recombinant ACE2 was reported to be effective in slowing the progression of kidney disease by reducing albumin excretion and modulating RAS depressor arm (AT2R, ACE2, Ang 1–7) by ACE2 activator or AT2R agonist might protect the kidney from renal injury (Oudit et al., 2010; Sharma, Malek, Mulay, & Gaikwad, 2019), which may provide potential clues for clinicians encountering COVID‐19 patients, especially complicated with kidney injury. However, the abovementioned mechanism of kidney injury in COVID‐19 infection should be verified in experiment under precise experimental design.

CONCLUSION

This study speculated that SARS‐Cov‐2 invaded proximal convoluted tubule, proximal tubule, proximal straight tubule cells, and glomerular parietal epithelial cells by means of ACE2 receptor and damaging kidney tissue through ACE2 imbalance and RAS activation, which offers substantial clues for clinical practice dealing with renal‐related complications caused by COVID‐19.

CONFLICT OF INTEREST

All authors declared no conflicts of interest to disclose.

AUTHOR CONTRIBUTIONS

The detailed contributions of each authors are listed as followed: Qiyu He: conceptualization, methodology, data analysis, manuscript writing. Tsz Ngai Mok: methodology, data analysis, manuscript writing. Liang Yun: investigation. Chengbo He: technical support of data processing. Jieruo Li: supervision, conceptualization, professional suggestion and revision. Jinghua Pan: supervision, conceptualization, professional suggestion and revision. Fig S1 Click here for additional data file. Fig S2 Click here for additional data file. Table S1 Click here for additional data file. Table S2 Click here for additional data file. Table S3 Click here for additional data file. Table S4 Click here for additional data file.
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Journal:  BMJ       Date:  2020-02-19

10.  MERS coronavirus induces apoptosis in kidney and lung by upregulating Smad7 and FGF2.

Authors:  Man-Lung Yeung; Yanfeng Yao; Lilong Jia; Jasper F W Chan; Kwok-Hung Chan; Kwok-Fan Cheung; Honglin Chen; Vincent K M Poon; Alan K L Tsang; Kelvin K W To; Ming-Kwong Yiu; Jade L L Teng; Hin Chu; Jie Zhou; Qing Zhang; Wei Deng; Susanna K P Lau; Johnson Y N Lau; Patrick C Y Woo; Tak-Mao Chan; Susan Yung; Bo-Jian Zheng; Dong-Yan Jin; Peter W Mathieson; Chuan Qin; Kwok-Yung Yuen
Journal:  Nat Microbiol       Date:  2016-02-22       Impact factor: 17.745

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  16 in total

1.  Single-cell transcriptomic profiles reveal changes associated with BCG-induced trained immunity and protective effects in circulating monocytes.

Authors:  Lingjia Kong; Simone J C F M Moorlag; Ariel Lefkovith; Bihua Li; Vasiliki Matzaraki; Liesbeth van Emst; Heather A Kang; Isabel Latorre; Martin Jaeger; Leo A B Joosten; Mihai G Netea; Ramnik J Xavier
Journal:  Cell Rep       Date:  2021-11-16       Impact factor: 9.423

Review 2.  Mechanisms of SARS-CoV-2 Infection-Induced Kidney Injury: A Literature Review.

Authors:  Weihang He; Xiaoqiang Liu; Bing Hu; Dongshui Li; Luyao Chen; Yu Li; Yechao Tu; Situ Xiong; Gongxian Wang; Jun Deng; Bin Fu
Journal:  Front Cell Infect Microbiol       Date:  2022-06-14       Impact factor: 6.073

Review 3.  SARS-CoV-2-Related Kidney Injury: Current Concern and Challenges.

Authors:  Yongqian Cheng; Wenling Wang; Liang Wu; Guangyan Cai
Journal:  SN Compr Clin Med       Date:  2020-09-23

4.  Androgens, the kidney, and COVID-19: an opportunity for translational research.

Authors:  Licy L Yanes Cardozo; Samar Rezq; Jacob E Pruett; Damian G Romero
Journal:  Am J Physiol Renal Physiol       Date:  2021-01-19

Review 5.  Multi-Organ Involvement in COVID-19: Beyond Pulmonary Manifestations.

Authors:  Vikram Thakur; Radha Kanta Ratho; Pradeep Kumar; Shashi Kant Bhatia; Ishani Bora; Gursimran Kaur Mohi; Shailendra K Saxena; Manju Devi; Dhananjay Yadav; Sanjeet Mehariya
Journal:  J Clin Med       Date:  2021-01-24       Impact factor: 4.241

6.  Interferon-regulated genetic programs and JAK/STAT pathway activate the intronic promoter of the short ACE2 isoform in renal proximal tubules.

Authors:  Jakub Jankowski; Hye Kyung Lee; Julia Wilflingseder; Lothar Hennighausen
Journal:  bioRxiv       Date:  2021-01-19

7.  Myoglobin and troponin as prognostic factors in patients with COVID-19 pneumonia.

Authors:  Feng Zhu; Weifeng Li; Qiuhai Lin; Mengdan Xu; Jiang Du; Hongli Li
Journal:  Med Clin (Barc)       Date:  2021-02-27       Impact factor: 3.200

8.  Transcriptional Profiling Reveals Kidney Neutrophil Heterogeneity in Both Healthy People and ccRCC Patients.

Authors:  Yiliang Meng; Kai Cai; Jingjie Zhao; Keyu Huang; Xiumei Ma; Jian Song; Yunguang Liu
Journal:  J Immunol Res       Date:  2021-03-15       Impact factor: 4.818

9.  The scRNA-seq Expression Profiling of the Receptor ACE2 and the Cellular Protease TMPRSS2 Reveals Human Organs Susceptible to SARS-CoV-2 Infection.

Authors:  Jing Qi; Yang Zhou; Jiao Hua; Liying Zhang; Jialin Bian; Beibei Liu; Zicen Zhao; Shuilin Jin
Journal:  Int J Environ Res Public Health       Date:  2021-01-02       Impact factor: 3.390

10.  Single-cell RNA sequencing analysis of human kidney reveals the presence of ACE2 receptor: A potential pathway of COVID-19 infection.

Authors:  Qiyu He; Tsz N Mok; Liang Yun; Chengbo He; Jieruo Li; Jinghua Pan
Journal:  Mol Genet Genomic Med       Date:  2020-08-03       Impact factor: 2.183

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