Literature DB >> 17381510

Mode of action of glycoside hydrolase family 5 glucuronoxylan xylanohydrolase from Erwinia chrysanthemi.

Mária Vrsanská1, Katarína Kolenová, Vladimír Puchart, Peter Biely.   

Abstract

The mode of action of xylanase A from a phytopathogenic bacterium, Erwinia chrysanthemi, classified in glycoside hydrolase family 5, was investigated on xylooligosaccharides and polysaccharides using TLC, MALDI-TOF MS and enzyme treatment with exoglycosidases. The hydrolytic action of xylanase A was found to be absolutely dependent on the presence of 4-O-methyl-D-glucuronosyl (MeGlcA) side residues in both oligosaccharides and polysaccharides. Neutral linear beta-1,4-xylooligosaccharides and esterified aldouronic acids were resistant towards enzymatic action. Aldouronic acids of the structure MeGlcA(3)Xyl(3) (aldotetraouronic acid), MeGlcA(3)Xyl(4) (aldopentaouronic acid) and MeGlcA(3)Xyl(5) (aldohexaouronic acid) were cleaved with the enzyme to give xylose from the reducing end and products shorter by one xylopyranosyl residue: MeGlcA(2)Xyl(2), MeGlcA(2)Xyl(3) and MeGlcA(2)Xyl(4). As a rule, the enzyme attacked the second glycosidic linkage following the MeGlcA branch towards the reducing end. Depending on the distribution of MeGlcA residues on the glucuronoxylan main chain, the enzyme generated series of shorter and longer aldouronic acids of backbone polymerization degree 3-14, in which the MeGlcA is linked exclusively to the second xylopyranosyl residue from the reducing end. Upon incubation with beta-xylosidase, all acidic hydrolysis products of acidic oligosaccharides and hardwood glucuronoxylans were converted to aldotriouronic acid, MeGlcA(2)Xyl(2). In agreement with this mode of action, xylose and unsubstituted oligosaccharides were essentially absent in the hydrolysates. The E. chrysanthemi xylanase A thus appears to be an excellent biocatalyst for the production of large acidic oligosaccharides from glucuronoxylans as well as an invaluable tool for determination of the distribution of MeGlcA residues along the main chain of this major plant hemicellulose.

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Year:  2007        PMID: 17381510     DOI: 10.1111/j.1742-4658.2007.05710.x

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  26 in total

Review 1.  The biochemistry and structural biology of plant cell wall deconstruction.

Authors:  Harry J Gilbert
Journal:  Plant Physiol       Date:  2010-04-20       Impact factor: 8.340

2.  Overexpression, crystallization and preliminary X-ray crystallographic analysis of glucuronoxylan xylanohydrolase (Xyn30A) from Clostridium thermocellum.

Authors:  Anil Kumar Verma; Arun Goyal; Filipe Freire; Pedro Bule; Immacolata Venditto; Joana L A Brás; Helena Santos; Vânia Cardoso; Cecília Bonifácio; Andrew Thompson; Maria João Romão; José A M Prates; Luís M A Ferreira; Carlos M G A Fontes; Shabir Najmudin
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-11-30

3.  GH30 Glucuronoxylan-Specific Xylanase from Streptomyces turgidiscabies C56.

Authors:  Tomoko Maehara; Haruka Yagi; Tomoko Sato; Mayumi Ohnishi-Kameyama; Zui Fujimoto; Kei Kamino; Yoshiaki Kitamura; Franz St John; Katsuro Yaoi; Satoshi Kaneko
Journal:  Appl Environ Microbiol       Date:  2018-01-31       Impact factor: 4.792

4.  Modular glucuronoxylan-specific xylanase with a family CBM35 carbohydrate-binding module.

Authors:  Susana Valeria Valenzuela; Pilar Diaz; F I Javier Pastor
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

5.  Structural analysis of glucuronoxylan-specific Xyn30D and its attached CBM35 domain gives insights into the role of modularity in specificity.

Authors:  M Angela Sainz-Polo; Susana Valeria Valenzuela; Beatriz González; F I Javier Pastor; Julia Sanz-Aparicio
Journal:  J Biol Chem       Date:  2014-09-08       Impact factor: 5.157

6.  Structure and function of an arabinoxylan-specific xylanase.

Authors:  Márcia A S Correia; Koushik Mazumder; Joana L A Brás; Susan J Firbank; Yanping Zhu; Richard J Lewis; William S York; Carlos M G A Fontes; Harry J Gilbert
Journal:  J Biol Chem       Date:  2011-03-04       Impact factor: 5.157

7.  A novel bacterial GH30 xylobiohydrolase from Hungateiclostridium clariflavum.

Authors:  Katarína Šuchová; Vladimír Puchart; Peter Biely
Journal:  Appl Microbiol Biotechnol       Date:  2020-11-20       Impact factor: 4.813

8.  Structural insights into the specificity of Xyn10B from Paenibacillus barcinonensis and its improved stability by forced protein evolution.

Authors:  Oscar Gallardo; F I Javier Pastor; Julio Polaina; Pilar Diaz; Robert Łysek; Pierre Vogel; Pablo Isorna; Beatriz González; Julia Sanz-Aparicio
Journal:  J Biol Chem       Date:  2009-11-23       Impact factor: 5.157

9.  Crystal structure of GH30-7 endoxylanase C from the filamentous fungus Talaromyces cellulolyticus.

Authors:  Yusuke Nakamichi; Tatsuya Fujii; Masahiro Watanabe; Akinori Matsushika; Hiroyuki Inoue
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-07-28       Impact factor: 1.056

10.  Crystallization and crystallographic analysis of Bacillus subtilis xylanase C.

Authors:  Franz J St John; David K Godwin; James F Preston; Edwin Pozharski; Jason C Hurlbert
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-04-24
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