Literature DB >> 32740831

Virus taxonomy and classification: naming of virus species.

Roger Hull1,2, Bert Rima3.   

Abstract

Virus classification arranges viruses showing similar properties into groups and, even though this depends on choices of which specific properties have a value for classification, it does have certain important features. It aims to give a structured arrangement of viruses so that the human mind can comprehend them more easily. It helps with communication between virologists, and between virologists and non-virologists (e.g. regulators, advisers, other stakeholders etc.). It enables properties of new viruses to be predicted, and it could reveal possible evolutionary relationships. We need appropriate unambiguous names for virus species, which is the keystone taxon, howsoever these are defined. We react to the recent consultation paper [1] and suggest that, before deciding on a binomial (Latinized or non-Latinized) system for virus species names, the International Committee on Taxonomy of Viruses develops a 21st century virus classification system that handles the large numbers of new virus species expected from metagenomic studies. This system should be user-friendly for easy communication, especially between virologists and non-virologist stakeholders.

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Year:  2020        PMID: 32740831     DOI: 10.1007/s00705-020-04748-7

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.574


  5 in total

1.  Consensus statement: Virus taxonomy in the age of metagenomics.

Authors:  Peter Simmonds; Mike J Adams; Mária Benkő; Mya Breitbart; J Rodney Brister; Eric B Carstens; Andrew J Davison; Eric Delwart; Alexander E Gorbalenya; Balázs Harrach; Roger Hull; Andrew M Q King; Eugene V Koonin; Mart Krupovic; Jens H Kuhn; Elliot J Lefkowitz; Max L Nibert; Richard Orton; Marilyn J Roossinck; Sead Sabanadzovic; Matthew B Sullivan; Curtis A Suttle; Robert B Tesh; René A van der Vlugt; Arvind Varsani; F Murilo Zerbini
Journal:  Nat Rev Microbiol       Date:  2017-01-03       Impact factor: 60.633

2.  Virus species polemics: 14 senior virologists oppose a proposed change to the ICTV definition of virus species.

Authors:  Marc H V Van Regenmortel; Hans-Wolfgang Ackermann; Charles H Calisher; Ralf G Dietzgen; Marian C Horzinek; Gunther M Keil; Brian W J Mahy; Giovanni P Martelli; Frederick A Murphy; Craig Pringle; Bert K Rima; Tim Skern; H-J Vetten; Scott C Weaver
Journal:  Arch Virol       Date:  2012-12-27       Impact factor: 2.574

3.  A clash of ideas - the varying uses of the 'species' term in virology and their utility for classifying viruses in metagenomic datasets.

Authors:  Peter Simmonds
Journal:  J Gen Virol       Date:  2018-03       Impact factor: 3.891

4.  2019: Archives of Virology celebrates its eightieth birthday with a scientific symposium.

Authors:  Tim Skern
Journal:  Arch Virol       Date:  2019-12-17       Impact factor: 2.574

5.  Binomial nomenclature for virus species: a consultation.

Authors:  Stuart G Siddell; Peter J Walker; Elliot J Lefkowitz; Arcady R Mushegian; Bas E Dutilh; Balázs Harrach; Robert L Harrison; Sandra Junglen; Nick J Knowles; Andrew M Kropinski; Mart Krupovic; Jens H Kuhn; Max L Nibert; Luisa Rubino; Sead Sabanadzovic; Peter Simmonds; Arvind Varsani; Francisco Murilo Zerbini; Andrew J Davison
Journal:  Arch Virol       Date:  2020-02       Impact factor: 2.574

  5 in total
  3 in total

1.  Novel viruses associated with plants of the family Amaryllidaceae in South Africa.

Authors:  David A Read; Ronel Roberts; Dirk Swanevelder; Gerhard Pietersen; Genevieve D Thompson
Journal:  Arch Virol       Date:  2021-07-19       Impact factor: 2.574

2.  The Plebeian Algorithm: A Democratic Approach to Censorship and Moderation.

Authors:  Benjamin Fedoruk; Harrison Nelson; Russell Frost; Kai Fucile Ladouceur
Journal:  JMIR Form Res       Date:  2021-12-21

3.  Adaptive Evolution of the Fox Coronavirus Based on Genome-Wide Sequence Analysis.

Authors:  Chunyu Feng; Yuting Liu; Guangqi Lyu; Songyang Shang; Hongyue Xia; Junpeng Zhang; David M Irwin; Zhe Wang; Shuyi Zhang
Journal:  Biomed Res Int       Date:  2022-04-13       Impact factor: 3.246

  3 in total

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