Literature DB >> 32739030

Positive and Negative Regulation of DNA Replication Initiation.

Qiliang Ding1, Amnon Koren2.   

Abstract

Genomic DNA is replicated every cell cycle by the programmed activation of replication origins at specific times and chromosomal locations. The factors that define the locations of replication origins and their typical activation times in eukaryotic cells are poorly understood. Previous studies highlighted the role of activating factors and epigenetic modifications in regulating replication initiation. Here, we review the role that repressive pathways - and their alleviation - play in establishing the genomic landscape of replication initiation. Several factors mediate this repression, in particular, factors associated with inactive chromatin. Repression can support organized, yet stochastic, replication initiation, and its absence could explain instances of rapid and random replication or re-replication.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Keywords:  DNA replication initiation; DNA replication timing; chromatin structure; negative regulation

Mesh:

Substances:

Year:  2020        PMID: 32739030      PMCID: PMC7572746          DOI: 10.1016/j.tig.2020.06.020

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  111 in total

1.  DNA replication origins fire stochastically in fission yeast.

Authors:  Prasanta K Patel; Benoit Arcangioli; Stephen P Baker; Aaron Bensimon; Nicholas Rhind
Journal:  Mol Biol Cell       Date:  2005-10-26       Impact factor: 4.138

2.  Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast.

Authors:  Davide Mantiero; Amanda Mackenzie; Anne Donaldson; Philip Zegerman
Journal:  EMBO J       Date:  2011-11-11       Impact factor: 11.598

3.  Prereplicative complexes assembled in vitro support origin-dependent and independent DNA replication.

Authors:  Kin Fan On; Fabienne Beuron; David Frith; Ambrosius P Snijders; Edward P Morris; John F X Diffley
Journal:  EMBO J       Date:  2014-02-24       Impact factor: 11.598

4.  The role of PR-Set7 in replication licensing depends on Suv4-20h.

Authors:  David B Beck; Adam Burton; Hisanobu Oda; Céline Ziegler-Birling; Maria-Elena Torres-Padilla; Danny Reinberg
Journal:  Genes Dev       Date:  2012-11-14       Impact factor: 11.361

5.  KDM4A lysine demethylase induces site-specific copy gain and rereplication of regions amplified in tumors.

Authors:  Joshua C Black; Amity L Manning; Capucine Van Rechem; Jaegil Kim; Brendon Ladd; Juok Cho; Cristiana M Pineda; Nancy Murphy; Danette L Daniels; Cristina Montagna; Peter W Lewis; Kimberly Glass; C David Allis; Nicholas J Dyson; Gad Getz; Johnathan R Whetstine
Journal:  Cell       Date:  2013-07-18       Impact factor: 41.582

6.  NCOA4 transcriptional coactivator inhibits activation of DNA replication origins.

Authors:  Roberto Bellelli; Maria Domenica Castellone; Teresa Guida; Roberto Limongello; Nina Alayne Dathan; Francesco Merolla; Anna Maria Cirafici; Andrea Affuso; Hisao Masai; Vincenzo Costanzo; Domenico Grieco; Alfredo Fusco; Massimo Santoro; Francesca Carlomagno
Journal:  Mol Cell       Date:  2014-06-05       Impact factor: 17.970

7.  Heterochromatin protein 1a stimulates histone H3 lysine 36 demethylation by the Drosophila KDM4A demethylase.

Authors:  Chia-Hui Lin; Bing Li; Selene Swanson; Ying Zhang; Laurence Florens; Michael P Washburn; Susan M Abmayr; Jerry L Workman
Journal:  Mol Cell       Date:  2008-12-05       Impact factor: 17.970

8.  The histone deacetylase inhibitor trichostatin A alters the pattern of DNA replication origin activity in human cells.

Authors:  Michael G Kemp; Maloy Ghosh; Guoqi Liu; Michael Leffak
Journal:  Nucleic Acids Res       Date:  2005-01-13       Impact factor: 16.971

9.  The chromatin environment shapes DNA replication origin organization and defines origin classes.

Authors:  Christelle Cayrou; Benoit Ballester; Isabelle Peiffer; Romain Fenouil; Philippe Coulombe; Jean-Christophe Andrau; Jacques van Helden; Marcel Méchali
Journal:  Genome Res       Date:  2015-11-11       Impact factor: 9.043

10.  Reversal of DDK-Mediated MCM Phosphorylation by Rif1-PP1 Regulates Replication Initiation and Replisome Stability Independently of ATR/Chk1.

Authors:  Robert C Alver; Gaganmeet Singh Chadha; Peter J Gillespie; J Julian Blow
Journal:  Cell Rep       Date:  2017-03-07       Impact factor: 9.423

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  4 in total

Review 1.  Preventing excess replication origin activation to ensure genome stability.

Authors:  Bhushan L Thakur; Anagh Ray; Christophe E Redon; Mirit I Aladjem
Journal:  Trends Genet       Date:  2021-10-06       Impact factor: 11.639

Review 2.  RIF1 Links Replication Timing with Fork Reactivation and DNA Double-Strand Break Repair.

Authors:  Janusz Blasiak; Joanna Szczepańska; Anna Sobczuk; Michal Fila; Elzbieta Pawlowska
Journal:  Int J Mol Sci       Date:  2021-10-23       Impact factor: 5.923

3.  Biomarker Value of miR-221 and miR-222 as Potential Substrates in the Differential Diagnosis of Papillary Thyroid Cancer Based on Data Synthesis and Bioinformatics Approach.

Authors:  Shang Cai; Jiayan Ma; Yong Wang; Yuxing Cai; Liwei Xie; Xiangying Chen; Yingying Yang; Qiliang Peng
Journal:  Front Endocrinol (Lausanne)       Date:  2022-02-07       Impact factor: 5.555

4.  The structure of ORC-Cdc6 on an origin DNA reveals the mechanism of ORC activation by the replication initiator Cdc6.

Authors:  Xiang Feng; Yasunori Noguchi; Marta Barbon; Bruce Stillman; Christian Speck; Huilin Li
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 17.694

  4 in total

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