Literature DB >> 32728882

Evolution of Human Brain Atlases in Terms of Content, Applications, Functionality, and Availability.

Wieslaw L Nowinski1.   

Abstract

Human brain atlases have been evolving tremendously, propelled recently by brain big projects, and driven by sophisticated imaging techniques, advanced brain mapping methods, vast data, analytical strategies, and powerful computing. We overview here this evolution in four categories: content, applications, functionality, and availability, in contrast to other works limited mostly to content. Four atlas generations are distinguished: early cortical maps, print stereotactic atlases, early digital atlases, and advanced brain atlas platforms, and 5 avenues in electronic atlases spanning the last two generations. Content-wise, new electronic atlases are categorized into eight groups considering their scope, parcellation, modality, plurality, scale, ethnicity, abnormality, and a mixture of them. Atlas content developments in these groups are heading in 23 various directions. Application-wise, we overview atlases in neuroeducation, research, and clinics, including stereotactic and functional neurosurgery, neuroradiology, neurology, and stroke. Functionality-wise, tools and functionalities are addressed for atlas creation, navigation, individualization, enabling operations, and application-specific. Availability is discussed in media and platforms, ranging from mobile solutions to leading-edge supercomputers, with three accessibility levels. The major application-wise shift has been from research to clinical practice, particularly in stereotactic and functional neurosurgery, although clinical applications are still lagging behind the atlas content progress. Atlas functionality also has been relatively neglected until recently, as the management of brain data explosion requires powerful tools. We suggest that the future human brain atlas-related research and development activities shall be founded on and benefit from a standard framework containing the core virtual brain model cum the brain atlas platform general architecture.

Entities:  

Keywords:  Brain atlas evolution; Brain atlas generations; Brain atlas platforms; Brain atlas review; Human brain atlas

Mesh:

Year:  2021        PMID: 32728882      PMCID: PMC7782399          DOI: 10.1007/s12021-020-09481-9

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  172 in total

1.  A digital interactive human brain atlas based on Chinese visible human datasets for anatomy teaching.

Authors:  Qiyu Li; Xu Ran; Shaoxiang Zhang; Liwen Tan; Mingguo Qiu
Journal:  J Craniofac Surg       Date:  2014-01       Impact factor: 1.046

2.  The Surgical White Matter Chassis: A Practical 3-Dimensional Atlas for Planning Subcortical Surgical Trajectories.

Authors:  Jonathan E Jennings; Amin B Kassam; Melanie B Fukui; Alejandro Monroy-Sosa; Srikant Chakravarthi; Nathan Kojis; Richard A Rovin
Journal:  Oper Neurosurg (Hagerstown)       Date:  2018-05-01       Impact factor: 2.703

3.  Three-dimensional database of subcortical electrophysiology for image-guided stereotactic functional neurosurgery.

Authors:  Kirk W Finnis; Yves P Starreveld; Andrew G Parrent; Abbas F Sadikot; Terry M Peters
Journal:  IEEE Trans Med Imaging       Date:  2003-01       Impact factor: 10.048

4.  Unbiased average age-appropriate atlases for pediatric studies.

Authors:  Vladimir Fonov; Alan C Evans; Kelly Botteron; C Robert Almli; Robert C McKinstry; D Louis Collins
Journal:  Neuroimage       Date:  2010-07-23       Impact factor: 6.556

5.  The Human Brain Project: Creating a European Research Infrastructure to Decode the Human Brain.

Authors:  Katrin Amunts; Christoph Ebell; Jeff Muller; Martin Telefont; Alois Knoll; Thomas Lippert
Journal:  Neuron       Date:  2016-11-02       Impact factor: 17.173

6.  Fast and robust multi-atlas segmentation of brain magnetic resonance images.

Authors:  Jyrki Mp Lötjönen; Robin Wolz; Juha R Koikkalainen; Lennart Thurfjell; Gunhild Waldemar; Hilkka Soininen; Daniel Rueckert
Journal:  Neuroimage       Date:  2009-10-24       Impact factor: 6.556

7.  Organoid single-cell genomic atlas uncovers human-specific features of brain development.

Authors:  Sabina Kanton; Michael James Boyle; Zhisong He; Malgorzata Santel; Anne Weigert; Fátima Sanchís-Calleja; Patricia Guijarro; Leila Sidow; Jonas Simon Fleck; Dingding Han; Zhengzong Qian; Michael Heide; Wieland B Huttner; Philipp Khaitovich; Svante Pääbo; Barbara Treutlein; J Gray Camp
Journal:  Nature       Date:  2019-10-16       Impact factor: 49.962

8.  Reconstruction and Simulation of Neocortical Microcircuitry.

Authors:  Henry Markram; Eilif Muller; Srikanth Ramaswamy; Michael W Reimann; Marwan Abdellah; Carlos Aguado Sanchez; Anastasia Ailamaki; Lidia Alonso-Nanclares; Nicolas Antille; Selim Arsever; Guy Antoine Atenekeng Kahou; Thomas K Berger; Ahmet Bilgili; Nenad Buncic; Athanassia Chalimourda; Giuseppe Chindemi; Jean-Denis Courcol; Fabien Delalondre; Vincent Delattre; Shaul Druckmann; Raphael Dumusc; James Dynes; Stefan Eilemann; Eyal Gal; Michael Emiel Gevaert; Jean-Pierre Ghobril; Albert Gidon; Joe W Graham; Anirudh Gupta; Valentin Haenel; Etay Hay; Thomas Heinis; Juan B Hernando; Michael Hines; Lida Kanari; Daniel Keller; John Kenyon; Georges Khazen; Yihwa Kim; James G King; Zoltan Kisvarday; Pramod Kumbhar; Sébastien Lasserre; Jean-Vincent Le Bé; Bruno R C Magalhães; Angel Merchán-Pérez; Julie Meystre; Benjamin Roy Morrice; Jeffrey Muller; Alberto Muñoz-Céspedes; Shruti Muralidhar; Keerthan Muthurasa; Daniel Nachbaur; Taylor H Newton; Max Nolte; Aleksandr Ovcharenko; Juan Palacios; Luis Pastor; Rodrigo Perin; Rajnish Ranjan; Imad Riachi; José-Rodrigo Rodríguez; Juan Luis Riquelme; Christian Rössert; Konstantinos Sfyrakis; Ying Shi; Julian C Shillcock; Gilad Silberberg; Ricardo Silva; Farhan Tauheed; Martin Telefont; Maria Toledo-Rodriguez; Thomas Tränkler; Werner Van Geit; Jafet Villafranca Díaz; Richard Walker; Yun Wang; Stefano M Zaninetta; Javier DeFelipe; Sean L Hill; Idan Segev; Felix Schürmann
Journal:  Cell       Date:  2015-10-08       Impact factor: 41.582

9.  A high-resolution probabilistic in vivo atlas of human subcortical brain nuclei.

Authors:  Wolfgang M Pauli; Amanda N Nili; J Michael Tyszka
Journal:  Sci Data       Date:  2018-04-17       Impact factor: 6.444

10.  Construction of brain atlases based on a multi-center MRI dataset of 2020 Chinese adults.

Authors:  Peipeng Liang; Lin Shi; Nan Chen; Yishan Luo; Xing Wang; Kai Liu; Vincent C T Mok; Winnie C W Chu; Defeng Wang; Kuncheng Li
Journal:  Sci Rep       Date:  2015-12-18       Impact factor: 4.379

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Authors:  Wieslaw L Nowinski
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4.  Towards an Architecture of a Multi-purpose, User-Extendable Reference Human Brain Atlas.

Authors:  Wieslaw L Nowinski
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