Literature DB >> 32728513

Draft genome sequence of Neonectria sp. DH2 isolated from Meconopsis grandis Prain in Tibet.

Xiaojing Lin1,2, Hui Xu2, Lan Liu1,3, Huixian Li1, Zhizeng Gao1,3.   

Abstract

In the current study, we report the high-quality draft genome sequence of Neonectria sp. DH2, an endophytic fungus isolated from Meconopsis grandis Prain in Tibet. The whole genome is about 45.8 Mbp, with a GC content of 53%. A total of 14,163 genes are predicted to encode proteins, and 557 of them are considered as unique, as no matches are found in five gene databases. A neighbor-joining phylogenetic tree based on internal transcribed spacer (ITS) region sequences shows that Neonectria sp. DH2 was most closely related to Neonectria ramulariae. 47 biosynthetic gene clusters (BGC) were identified in Neonectria sp. DH2 genome, and only 5 BGCs shows significant similarities to previously reported BGCs. The presence of 42 unique BGCs in Neonectria sp. DH2 suggests that it has great potential to produce novel secondary metabolites. © King Abdulaziz City for Science and Technology 2020.

Entities:  

Keywords:  Draft genome; Endophytic fungi; Neonectria sp. DH2; Secondary metabolites

Year:  2020        PMID: 32728513      PMCID: PMC7374493          DOI: 10.1007/s13205-020-02345-8

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  20 in total

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Authors:  Mario Stanke; Rasmus Steinkamp; Stephan Waack; Burkhard Morgenstern
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Using RepeatMasker to identify repetitive elements in genomic sequences.

Authors:  Maja Tarailo-Graovac; Nansheng Chen
Journal:  Curr Protoc Bioinformatics       Date:  2009-03

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

Authors:  Felipe A Simão; Robert M Waterhouse; Panagiotis Ioannidis; Evgenia V Kriventseva; Evgeny M Zdobnov
Journal:  Bioinformatics       Date:  2015-06-09       Impact factor: 6.937

5.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

6.  Isolation and Structure Elucidation of Fujikurins A-D: Products of the PKS19 Gene Cluster in Fusarium fujikuroi.

Authors:  Katharina Walburga von Bargen; Eva-Maria Niehaus; Isabel Krug; Klaus Bergander; Ernst-Ulrich Würthwein; Bettina Tudzynski; Hans-Ulrich Humpf
Journal:  J Nat Prod       Date:  2015-07-20       Impact factor: 4.050

7.  Genetic engineering, high resolution mass spectrometry and nuclear magnetic resonance spectroscopy elucidate the bikaverin biosynthetic pathway in Fusarium fujikuroi.

Authors:  Birgit Arndt; Lena Studt; Philipp Wiemann; Helena Osmanov; Karin Kleigrewe; Jens Köhler; Isabel Krug; Bettina Tudzynski; Hans-Ulrich Humpf
Journal:  Fungal Genet Biol       Date:  2015-09-14       Impact factor: 3.495

8.  Diversity and antimicrobial activity of endophytic fungi isolated from Cephalotaxus hainanensis Li, a well-known medicinal plant in China.

Authors:  H R Yang; X P Hu; C J Jiang; J Qi; Y C Wu; W Li; Y J Zeng; C F Li; S X Liu
Journal:  Lett Appl Microbiol       Date:  2015-09-29       Impact factor: 2.858

9.  Biosynthesis of LL-Z1272β: Discovery of a New Member of NRPS-like Enzymes for Aryl-Aldehyde Formation.

Authors:  Chang Li; Yudai Matsuda; Hao Gao; Dan Hu; Xin Sheng Yao; Ikuro Abe
Journal:  Chembiochem       Date:  2016-04-09       Impact factor: 3.164

10.  Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.

Authors:  Sergey Koren; Brian P Walenz; Konstantin Berlin; Jason R Miller; Nicholas H Bergman; Adam M Phillippy
Journal:  Genome Res       Date:  2017-03-15       Impact factor: 9.043

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