Literature DB >> 32728345

Dynamics reconstruction and classification via Koopman features.

Wei Zhang1, Yao-Chsi Yu1, Jr-Shin Li1.   

Abstract

Knowledge discovery and information extraction of large and complex datasets has attracted great attention in wide-ranging areas from statistics and biology to medicine. Tools from machine learning, data mining, and neurocomputing have been extensively explored and utilized to accomplish such compelling data analytics tasks. However, for time-series data presenting active dynamic characteristics, many of the state-of-the-art techniques may not perform well in capturing the inherited temporal structures in these data. In this paper, integrating the Koopman operator and linear dynamical systems theory with support vector machines, we develop an ovel dynamic data mining framework to construct low-dimensional linear models that approximate the nonlinear flow of high-dimensional time-series data generated by unknown nonlinear dynamical systems. This framework then immediately enables pattern recognition, e.g., classification, of complex time-series data to distinguish their dynamic behaviors by using the trajectories generated by the reduced linear systems. Moreover, we demonstrate the applicability and efficiency of this framework through the problems of time-series classification in bioinformatics and healthcare, including cognitive classification and seizure detection with fMRI and EEG data, respectively. The developed Koopman dynamic learning framework then lays a solid foundation for effective dynamic data mining and promises a mathematically justified method for extracting the dynamics and significant temporal structures of nonlinear dynamical systems.

Entities:  

Keywords:  Bioinformatics; Data-driven methods; Dimensionality reduction; Dynamic data mining; Healthcare; Koopman operators; Spectral methods; Time-series classification

Year:  2019        PMID: 32728345      PMCID: PMC7390473          DOI: 10.1007/s10618-019-00639-x

Source DB:  PubMed          Journal:  Data Min Knowl Discov        ISSN: 1384-5810            Impact factor:   3.670


  21 in total

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3.  Adaptive Seizure Onset Detection Framework Using a Hybrid PCA-CSP Approach.

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5.  A neural network method for automatic and incremental learning applied to patient-dependent seizure detection.

Authors:  Scott B Wilson
Journal:  Clin Neurophysiol       Date:  2005-08       Impact factor: 3.708

6.  Distributed and overlapping representations of faces and objects in ventral temporal cortex.

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Review 7.  Bayesian methods in bioinformatics and computational systems biology.

Authors:  Darren J Wilkinson
Journal:  Brief Bioinform       Date:  2007-04-12       Impact factor: 11.622

8.  Algorithm architectures for patient dependent seizure detection.

Authors:  Scott B Wilson
Journal:  Clin Neurophysiol       Date:  2006-04-04       Impact factor: 3.708

Review 9.  Pattern recognition software and techniques for biological image analysis.

Authors:  Lior Shamir; John D Delaney; Nikita Orlov; D Mark Eckley; Ilya G Goldberg
Journal:  PLoS Comput Biol       Date:  2010-11-24       Impact factor: 4.475

10.  Brain response pattern identification of fMRI data using a particle swarm optimization-based approach.

Authors:  Xinpei Ma; Chun-An Chou; Hiroki Sayama; Wanpracha Art Chaovalitwongse
Journal:  Brain Inform       Date:  2016-04-07
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