Literature DB >> 17430978

Bayesian methods in bioinformatics and computational systems biology.

Darren J Wilkinson1.   

Abstract

Bayesian methods are valuable, inter alia, whenever there is a need to extract information from data that are uncertain or subject to any kind of error or noise (including measurement error and experimental error, as well as noise or random variation intrinsic to the process of interest). Bayesian methods offer a number of advantages over more conventional statistical techniques that make them particularly appropriate for complex data. It is therefore no surprise that Bayesian methods are becoming more widely used in the fields of genetics, genomics, bioinformatics and computational systems biology, where making sense of complex noisy data is the norm. This review provides an introduction to the growing literature in this area, with particular emphasis on recent developments in Bayesian bioinformatics relevant to computational systems biology.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17430978     DOI: 10.1093/bib/bbm007

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  58 in total

1.  A Bayesian network approach to the study of historical epidemiological databases: modelling meningitis outbreaks in the Niger.

Authors:  A Beresniak; E Bertherat; W Perea; G Soga; R Souley; D Dupont; S Hugonnet
Journal:  Bull World Health Organ       Date:  2012-01-20       Impact factor: 9.408

Review 2.  Computational prediction of type III and IV secreted effectors in gram-negative bacteria.

Authors:  Jason E McDermott; Abigail Corrigan; Elena Peterson; Christopher Oehmen; George Niemann; Eric D Cambronne; Danna Sharp; Joshua N Adkins; Ram Samudrala; Fred Heffron
Journal:  Infect Immun       Date:  2010-10-25       Impact factor: 3.441

3.  A literature mining-based approach for identification of cellular pathways associated with chemoresistance in cancer.

Authors:  Jung Hun Oh; Joseph O Deasy
Journal:  Brief Bioinform       Date:  2015-07-27       Impact factor: 11.622

Review 4.  Stochastic modelling for quantitative description of heterogeneous biological systems.

Authors:  Darren J Wilkinson
Journal:  Nat Rev Genet       Date:  2009-02       Impact factor: 53.242

5.  Calibration of dynamic models of biological systems with KInfer.

Authors:  Paola Lecca; Alida Palmisano; Adaoha Ihekwaba; Corrado Priami
Journal:  Eur Biophys J       Date:  2009-08-11       Impact factor: 1.733

6.  Modeling signal transduction leading to synaptic plasticity: evaluation and comparison of five models.

Authors:  Tiina Manninen; Katri Hituri; Eeva Toivari; Marja-Leena Linne
Journal:  EURASIP J Bioinform Syst Biol       Date:  2011-03-29

7.  The center for causal discovery of biomedical knowledge from big data.

Authors:  Gregory F Cooper; Ivet Bahar; Michael J Becich; Panayiotis V Benos; Jeremy Berg; Jeremy U Espino; Clark Glymour; Rebecca Crowley Jacobson; Michelle Kienholz; Adrian V Lee; Xinghua Lu; Richard Scheines
Journal:  J Am Med Inform Assoc       Date:  2015-07-02       Impact factor: 4.497

8.  Parameter estimation and model selection in computational biology.

Authors:  Gabriele Lillacci; Mustafa Khammash
Journal:  PLoS Comput Biol       Date:  2010-03-05       Impact factor: 4.475

9.  The effect of prior assumptions over the weights in BayesPI with application to study protein-DNA interactions from ChIP-based high-throughput data.

Authors:  Junbai Wang
Journal:  BMC Bioinformatics       Date:  2010-08-04       Impact factor: 3.169

10.  An empirical Bayesian approach for model-based inference of cellular signaling networks.

Authors:  David J Klinke
Journal:  BMC Bioinformatics       Date:  2009-11-09       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.