Literature DB >> 32726586

Strategies for Tuning the Selectivity of Chemical Probes that Target Serine Hydrolases.

Franco Faucher1, John M Bennett1, Matthew Bogyo2, Scott Lovell3.   

Abstract

Serine hydrolases comprise a large family of enzymes that have diverse roles in key cellular processes, such as lipid metabolism, cell signaling, and regulation of post-translation modifications of proteins. They are also therapeutic targets for multiple human pathologies, including viral infection, diabetes, hypertension, and Alzheimer disease; however, few have well-defined substrates and biological functions. Activity-based probes (ABPs) have been used as effective tools to both profile activity and screen for selective inhibitors of serine hydrolases. One broad-spectrum ABP containing a fluorophosphonate electrophile has been used extensively to advance our understanding of diverse serine hydrolases. Due to the success of this single reagent, several robust chemistries have been developed to further diversify and tune the selectivity of ABPs used to target serine hydrolases. In this review, we highlight approaches to identify selective serine hydrolase ABPs and suggest new synthetic methodologies that could be applied to further advance probe development.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  activity-based probe; activity-based protein profiling; covalent binders; protease; serine hydrolase

Mesh:

Substances:

Year:  2020        PMID: 32726586      PMCID: PMC7484133          DOI: 10.1016/j.chembiol.2020.07.008

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN: 2451-9448            Impact factor:   8.116


  90 in total

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Journal:  Angew Chem Int Ed Engl       Date:  2013-10-31       Impact factor: 15.336

2.  Synthesis of novel phosphonic-type activity-based probes for neutrophil serine proteases and their application in spleen lysates of different organisms.

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Journal:  Chembiochem       Date:  2014-09-18       Impact factor: 3.164

Review 3.  Orlistat, a new lipase inhibitor for the management of obesity.

Authors:  A M Heck; J A Yanovski; K A Calis
Journal:  Pharmacotherapy       Date:  2000-03       Impact factor: 4.705

4.  Modular click chemistry libraries for functional screens using a diazotizing reagent.

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Journal:  Nature       Date:  2019-10-02       Impact factor: 49.962

5.  Piperazine and piperidine triazole ureas as ultrapotent and highly selective inhibitors of monoacylglycerol lipase.

Authors:  Niina Aaltonen; Juha R Savinainen; Casandra Riera Ribas; Jani Rönkkö; Anne Kuusisto; Jani Korhonen; Dina Navia-Paldanius; Jukka Häyrinen; Piia Takabe; Heikki Käsnänen; Tatu Pantsar; Tuomo Laitinen; Marko Lehtonen; Sanna Pasonen-Seppänen; Antti Poso; Tapio Nevalainen; Jarmo T Laitinen
Journal:  Chem Biol       Date:  2013-03-21

6.  Phage-encoded combinatorial chemical libraries based on bicyclic peptides.

Authors:  Christian Heinis; Trevor Rutherford; Stephan Freund; Greg Winter
Journal:  Nat Chem Biol       Date:  2009-07       Impact factor: 15.040

7.  Development of a Multiplexed Activity-Based Protein Profiling Assay to Evaluate Activity of Endocannabinoid Hydrolase Inhibitors.

Authors:  Antonius P A Janssen; Daan van der Vliet; Alexander T Bakker; Ming Jiang; Sebastian H Grimm; Giuseppe Campiani; Stefania Butini; Mario van der Stelt
Journal:  ACS Chem Biol       Date:  2018-09-12       Impact factor: 5.100

8.  Design and Potency of Dual Soluble Epoxide Hydrolase/Fatty Acid Amide Hydrolase Inhibitors.

Authors:  Sean D Kodani; Debin Wan; Karen M Wagner; Sung Hee Hwang; Christophe Morisseau; Bruce D Hammock
Journal:  ACS Omega       Date:  2018-10-25

Review 9.  Activity-based protein profiling of host-virus interactions.

Authors:  David R Blais; Neda Nasheri; Craig S McKay; Marc C B Legault; John Paul Pezacki
Journal:  Trends Biotechnol       Date:  2011-09-22       Impact factor: 19.536

10.  Identification of a S. aureus virulence factor by activity-based protein profiling (ABPP).

Authors:  Christian S Lentz; Jessica R Sheldon; Lisa A Crawford; Rachel Cooper; Megan Garland; Manuel R Amieva; Eranthie Weerapana; Eric P Skaar; Matthew Bogyo
Journal:  Nat Chem Biol       Date:  2018-05-16       Impact factor: 15.040

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  5 in total

1.  Selective inhibitors of SARM1 targeting an allosteric cysteine in the autoregulatory ARM domain.

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Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-22       Impact factor: 12.779

Review 2.  Activity-Based Probes for Proteases Pave the Way to Theranostic Applications.

Authors:  Georgia Sotiropoulou; Eleni Zingkou; Evangelos Bisyris; Georgios Pampalakis
Journal:  Pharmaceutics       Date:  2022-04-30       Impact factor: 6.525

3.  Identification of covalent inhibitors that disrupt M. tuberculosis growth by targeting multiple serine hydrolases involved in lipid metabolism.

Authors:  Brett M Babin; Laura J Keller; Yishay Pinto; Veronica L Li; Andrew S Eneim; Summer E Vance; Stephanie M Terrell; Ami S Bhatt; Jonathan Z Long; Matthew Bogyo
Journal:  Cell Chem Biol       Date:  2021-10-01       Impact factor: 9.039

Review 4.  Tools for the discovery of biopolymer producing cysteine relays.

Authors:  Peter D Mabbitt
Journal:  Biophys Rev       Date:  2021-03-11

5.  Docking-generated multiple ligand poses for bootstrapping bioactivity classifying Machine Learning: Repurposing covalent inhibitors for COVID-19-related TMPRSS2 as case study.

Authors:  Ma'mon M Hatmal; Omar Abuyaman; Mutasem Taha
Journal:  Comput Struct Biotechnol J       Date:  2021-08-19       Impact factor: 7.271

  5 in total

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