Literature DB >> 32710516

Deblurring for spiral real-time MRI using convolutional neural networks.

Yongwan Lim1, Yannick Bliesener1, Shrikanth Narayanan1, Krishna S Nayak1.   

Abstract

PURPOSE: To develop and evaluate a fast and effective method for deblurring spiral real-time MRI (RT-MRI) using convolutional neural networks.
METHODS: We demonstrate a 3-layer residual convolutional neural networks to correct image domain off-resonance artifacts in speech production spiral RT-MRI without the knowledge of field maps. The architecture is motivated by the traditional deblurring approaches. Spatially varying off-resonance blur is synthetically generated by using discrete object approximation and field maps with data augmentation from a large database of 2D human speech production RT-MRI. The effect of off-resonance range, shift-invariance of blur, and readout durations on deblurring performance are investigated. The proposed method is validated using synthetic and real data with longer readouts, quantitatively using image quality metrics and qualitatively via visual inspection, and with a comparison to conventional deblurring methods.
RESULTS: Deblurring performance was found superior to a current autocalibrated method for in vivo data and only slightly worse than an ideal reconstruction with perfect knowledge of the field map for synthetic test data. Convolutional neural networks deblurring made it possible to visualize articulator boundaries with readouts up to 8 ms at 1.5 T, which is 3-fold longer than the current standard practice. The computation time was 12.3 ± 2.2 ms per frame, enabling low-latency processing for RT-MRI applications.
CONCLUSION: Convolutional neural networks deblurring is a practical, efficient, and field map-free approach for the deblurring of spiral RT-MRI. In the context of speech production imaging, this can enable 1.7-fold improvement in scan efficiency and the use of spiral readouts at higher field strengths such as 3 T.
© 2020 International Society for Magnetic Resonance in Medicine.

Entities:  

Keywords:  artifact correction; convolutional neural networks; deblurring; off-resonance; real-time MRI; speech production

Mesh:

Year:  2020        PMID: 32710516      PMCID: PMC7722023          DOI: 10.1002/mrm.28393

Source DB:  PubMed          Journal:  Magn Reson Med        ISSN: 0740-3194            Impact factor:   4.668


  37 in total

1.  Efficient off-resonance correction for spiral imaging.

Authors:  K S Nayak; C M Tsai; C H Meyer; D G Nishimura
Journal:  Magn Reson Med       Date:  2001-03       Impact factor: 4.668

2.  An approach to real-time magnetic resonance imaging for speech production.

Authors:  Shrikanth Narayanan; Krishna Nayak; Sungbok Lee; Abhinav Sethy; Dani Byrd
Journal:  J Acoust Soc Am       Date:  2004-04       Impact factor: 1.840

3.  MR image reconstruction from highly undersampled k-space data by dictionary learning.

Authors:  Saiprasad Ravishankar; Yoram Bresler
Journal:  IEEE Trans Med Imaging       Date:  2010-11-01       Impact factor: 10.048

4.  Faster dynamic imaging of speech with field inhomogeneity corrected spiral fast low angle shot (FLASH) at 3 T.

Authors:  Bradley P Sutton; Charles A Conway; Youkyung Bae; Ravi Seethamraju; David P Kuehn
Journal:  J Magn Reson Imaging       Date:  2010-11       Impact factor: 4.813

5.  Reconstruction by weighted correlation for MRI with time-varying gradients.

Authors:  A Maeda; K Sano; T Yokoyama
Journal:  IEEE Trans Med Imaging       Date:  1988       Impact factor: 10.048

6.  Improved automatic off-resonance correction without a field map in spiral imaging.

Authors:  L C Man; J M Pauly; A Macovski
Journal:  Magn Reson Med       Date:  1997-06       Impact factor: 4.668

7.  Low-Dose CT With a Residual Encoder-Decoder Convolutional Neural Network.

Authors:  Hu Chen; Yi Zhang; Mannudeep K Kalra; Feng Lin; Yang Chen; Peixi Liao; Jiliu Zhou; Ge Wang
Journal:  IEEE Trans Med Imaging       Date:  2017-06-13       Impact factor: 10.048

8.  A velocity k-space analysis of flow effects in echo-planar and spiral imaging.

Authors:  D G Nishimura; P Irarrazabal; C H Meyer
Journal:  Magn Reson Med       Date:  1995-04       Impact factor: 4.668

9.  Dynamic off-resonance correction for spiral real-time MRI of speech.

Authors:  Yongwan Lim; Sajan Goud Lingala; Shrikanth S Narayanan; Krishna S Nayak
Journal:  Magn Reson Med       Date:  2018-07-29       Impact factor: 4.668

10.  Non-Cartesian balanced steady-state free precession pulse sequences for real-time cardiac MRI.

Authors:  Xue Feng; Michael Salerno; Christopher M Kramer; Craig H Meyer
Journal:  Magn Reson Med       Date:  2015-05-08       Impact factor: 4.668

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  4 in total

1.  Evaluation of a novel 8-channel RX coil for speech production MRI at 0.55 T.

Authors:  Felix Muñoz; Yongwan Lim; Sophia X Cui; Helmut Stark; Krishna S Nayak
Journal:  MAGMA       Date:  2022-08-20       Impact factor: 2.533

2.  Self-gated 3D stack-of-spirals UTE pulmonary imaging at 0.55T.

Authors:  Ahsan Javed; Rajiv Ramasawmy; Kendall O'Brien; Christine Mancini; Pan Su; Waqas Majeed; Thomas Benkert; Himanshu Bhat; Anthony F Suffredini; Ashkan Malayeri; Adrienne E Campbell-Washburn
Journal:  Magn Reson Med       Date:  2021-11-16       Impact factor: 3.737

Review 3.  Real-Time Magnetic Resonance Imaging.

Authors:  Krishna S Nayak; Yongwan Lim; Adrienne E Campbell-Washburn; Jennifer Steeden
Journal:  J Magn Reson Imaging       Date:  2020-12-09       Impact factor: 4.813

4.  A multispeaker dataset of raw and reconstructed speech production real-time MRI video and 3D volumetric images.

Authors:  Yongwan Lim; Asterios Toutios; Yannick Bliesener; Ye Tian; Sajan Goud Lingala; Colin Vaz; Tanner Sorensen; Miran Oh; Sarah Harper; Weiyi Chen; Yoonjeong Lee; Johannes Töger; Mairym Lloréns Monteserin; Caitlin Smith; Bianca Godinez; Louis Goldstein; Dani Byrd; Krishna S Nayak; Shrikanth S Narayanan
Journal:  Sci Data       Date:  2021-07-20       Impact factor: 6.444

  4 in total

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