Literature DB >> 32700898

Simple and Minimally Invasive SID Devices for Native Mass Spectrometry.

Dalton T Snyder, Erin M Panczyk, Arpad Somogyi, Desmond A Kaplan1, Vicki Wysocki.   

Abstract

We describe a set of simple devices for surface-induced dissociation of proteins and protein complexes on three instrument platforms. All of the devices use a novel yet simple split lens geometry that is minimally invasive (requiring a few millimeters along the ion path axis) and is easier to operate than prior generations of devices. The split lens is designed to be small enough to replace the entrance lens of a Bruker FT-ICR collision cell, the dynamic range enhancement (DRE) lens of a Waters Q-IM-TOF, or the exit lens of a transfer multipole of a Thermo Scientific Extended Mass Range (EMR) Orbitrap. Despite the decrease in size and reduction in number of electrodes to 3 (from 10 to 12 in Gen 1 and ∼6 in Gen 2), we show sensitivity improvement in a variety of cases across all platforms while also maintaining SID capabilities across a wide mass and energy range. The coupling of SID, high resolution, and ion mobility is demonstrated for a variety of protein complexes of varying topologies.

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Year:  2020        PMID: 32700898      PMCID: PMC7438310          DOI: 10.1021/acs.analchem.0c01657

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  43 in total

Review 1.  Surface-induced dissociation of peptide ions: kinetics and dynamics.

Authors:  Julia Laskin; Jean H Futrell
Journal:  J Am Soc Mass Spectrom       Date:  2003-12       Impact factor: 3.109

Review 2.  Surface-induced dissociation of small molecules, peptides, and non-covalent protein complexes.

Authors:  Vicki H Wysocki; Karen E Joyce; Christopher M Jones; Richard L Beardsley
Journal:  J Am Soc Mass Spectrom       Date:  2007-11-19       Impact factor: 3.109

3.  Surface-induced dissociation of peptides and protein complexes in a quadrupole/time-of-flight mass spectrometer.

Authors:  Asiri S Galhena; Shai Dagan; Christopher M Jones; Richard L Beardsley; Vicki H Wysocki
Journal:  Anal Chem       Date:  2008-02-02       Impact factor: 6.986

4.  Surface-induced dissociation shows potential to be more informative than collision-induced dissociation for structural studies of large systems.

Authors:  Vicki H Wysocki; Christopher M Jones; Asiri S Galhena; Anne E Blackwell
Journal:  J Am Soc Mass Spectrom       Date:  2008-04-26       Impact factor: 3.109

5.  Surface induced dissociation yields quaternary substructure of refractory noncovalent phosphorylase B and glutamate dehydrogenase complexes.

Authors:  Xin Ma; Mowei Zhou; Vicki H Wysocki
Journal:  J Am Soc Mass Spectrom       Date:  2014-01-23       Impact factor: 3.109

6.  Extensive Charge Reduction and Dissociation of Intact Protein Complexes Following Electron Transfer on a Quadrupole-Ion Mobility-Time-of-Flight MS.

Authors:  Frederik Lermyte; Jonathan P Williams; Jeffery M Brown; Esther M Martin; Frank Sobott
Journal:  J Am Soc Mass Spectrom       Date:  2015-04-11       Impact factor: 3.109

7.  Expanding the structural analysis capabilities on an Orbitrap-based mass spectrometer for large macromolecular complexes.

Authors:  Kyle L Fort; Michiel van de Waterbeemd; Dmitriy Boll; Maria Reinhardt-Szyba; Mikhail E Belov; Eita Sasaki; Reinhard Zschoche; Donald Hilvert; Alexander A Makarov; Albert J R Heck
Journal:  Analyst       Date:  2017-12-18       Impact factor: 4.616

8.  Design and Performance of a Second-Generation Surface-Induced Dissociation Cell for Fourier Transform Ion Cyclotron Resonance Mass Spectrometry of Native Protein Complexes.

Authors:  Dalton T Snyder; Erin Panczyk; Alyssa Q Stiving; Joshua D Gilbert; Arpad Somogyi; Desmond Kaplan; Vicki Wysocki
Journal:  Anal Chem       Date:  2019-10-22       Impact factor: 6.986

9.  Surface-induced dissociation by Fourier transform mass spectrometry.

Authors:  C F Ijames; C L Wilkins
Journal:  Anal Chem       Date:  1990-07-01       Impact factor: 6.986

10.  Refining the Structural Model of a Heterohexameric Protein Complex: Surface Induced Dissociation and Ion Mobility Provide Key Connectivity and Topology Information.

Authors:  Yang Song; Micah T Nelp; Vahe Bandarian; Vicki H Wysocki
Journal:  ACS Cent Sci       Date:  2015-11-18       Impact factor: 14.553

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  13 in total

1.  Separation and Collision Cross Section Measurements of Protein Complexes Afforded by a Modular Drift Tube Coupled to an Orbitrap Mass Spectrometer.

Authors:  Sarah N Sipe; James D Sanders; Tobias Reinecke; Brian H Clowers; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2022-06-23       Impact factor: 8.008

Review 2.  High-Resolution Native Mass Spectrometry.

Authors:  Sem Tamara; Maurits A den Boer; Albert J R Heck
Journal:  Chem Rev       Date:  2021-08-20       Impact factor: 72.087

3.  Surface-Induced Dissociation for Protein Complex Characterization.

Authors:  Sophie R Harvey; Gili Ben-Nissan; Michal Sharon; Vicki H Wysocki
Journal:  Methods Mol Biol       Date:  2022

Review 4.  Surface-induced Dissociation Mass Spectrometry as a Structural Biology Tool.

Authors:  Dalton T Snyder; Sophie R Harvey; Vicki H Wysocki
Journal:  Chem Rev       Date:  2021-11-02       Impact factor: 72.087

Review 5.  Recent technological developments for native mass spectrometry.

Authors:  Ian K Webb
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2021-10-12       Impact factor: 4.125

Review 6.  Mass Spectrometry Methods for Measuring Protein Stability.

Authors:  Daniel D Vallejo; Carolina Rojas Ramírez; Kristine F Parson; Yilin Han; Varun V Gadkari; Brandon T Ruotolo
Journal:  Chem Rev       Date:  2022-03-22       Impact factor: 72.087

7.  Tandem surface-induced dissociation of protein complexes on an ultrahigh resolution platform.

Authors:  Dalton T Snyder; Yu-Fu Lin; Arpad Somogyi; Vicki Wysocki
Journal:  Int J Mass Spectrom       Date:  2021-01-05       Impact factor: 1.986

8.  Surface-Induced Dissociation of Protein Complexes Selected by Trapped Ion Mobility Spectrometry.

Authors:  Erin M Panczyk; Dalton T Snyder; Mark E Ridgeway; Árpád Somogyi; Melvin A Park; Vicki H Wysocki
Journal:  Anal Chem       Date:  2021-03-22       Impact factor: 6.986

9.  Prediction of Protein Complex Structure Using Surface-Induced Dissociation and Cryo-Electron Microscopy.

Authors:  Justin T Seffernick; Shane M Canfield; Sophie R Harvey; Vicki H Wysocki; Steffen Lindert
Journal:  Anal Chem       Date:  2021-05-17       Impact factor: 8.008

Review 10.  Higher-order structural characterisation of native proteins and complexes by top-down mass spectrometry.

Authors:  Mowei Zhou; Carter Lantz; Kyle A Brown; Ying Ge; Ljiljana Paša-Tolić; Joseph A Loo; Frederik Lermyte
Journal:  Chem Sci       Date:  2020-10-20       Impact factor: 9.969

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