Literature DB >> 32696390

Multiple Site-Specific Phosphorylation of IDPs Monitored by NMR.

Manon Julien1, Chafiaa Bouguechtouli1, Ania Alik1, Rania Ghouil1, Sophie Zinn-Justin1, François-Xavier Theillet2.   

Abstract

In line with their high accessibility, disordered proteins are exquisite targets of kinases. Eukaryotic organisms use the so-called intrinsically disordered proteins (IDPs) or intrinsically disordered regions of proteins (IDRs) as molecular switches carrying intracellular information tuned by reversible phosphorylation schemes. Solvent-exposed serines and threonines are abundant in IDPs, and, consistently, kinases often modify disordered regions of proteins at multiple sites. In this context, nuclear magnetic resonance (NMR) spectroscopy provides quantitative, residue-specific information that permits mapping of phosphosites and monitoring of their individual kinetics. Hence, NMR monitoring emerges as an in vitro approach, complementary to mass-spectrometry or immuno-blotting, to characterize IDP phosphorylation comprehensively. Here, we describe in detail generic protocols for carrying out NMR monitoring of IDP phosphorylation, and we provide a number of practical insights that improve handiness and reproducibility of this method.

Entities:  

Keywords:  Cell signaling; IDP; Intrinsically disordered proteins; Kinases; Multiple phosphosites; NMR spectroscopy; Phosphorylation; Post-translational modifications; Quantitative NMR; Time-resolved NMR

Mesh:

Substances:

Year:  2020        PMID: 32696390     DOI: 10.1007/978-1-0716-0524-0_41

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  37 in total

1.  Ultradeep human phosphoproteome reveals a distinct regulatory nature of Tyr and Ser/Thr-based signaling.

Authors:  Kirti Sharma; Rochelle C J D'Souza; Stefka Tyanova; Christoph Schaab; Jacek R Wiśniewski; Jürgen Cox; Matthias Mann
Journal:  Cell Rep       Date:  2014-08-21       Impact factor: 9.423

Review 2.  Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs).

Authors:  Francois-Xavier Theillet; Andres Binolfi; Tamara Frembgen-Kesner; Karan Hingorani; Mohona Sarkar; Ciara Kyne; Conggang Li; Peter B Crowley; Lila Gierasch; Gary J Pielak; Adrian H Elcock; Anne Gershenson; Philipp Selenko
Journal:  Chem Rev       Date:  2014-06-05       Impact factor: 60.622

Review 3.  Intrinsically disordered proteins in cellular signalling and regulation.

Authors:  Peter E Wright; H Jane Dyson
Journal:  Nat Rev Mol Cell Biol       Date:  2015-01       Impact factor: 94.444

4.  Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes.

Authors:  Panayotis Vlastaridis; Pelagia Kyriakidou; Anargyros Chaliotis; Yves Van de Peer; Stephen G Oliver; Grigoris D Amoutzias
Journal:  Gigascience       Date:  2017-02-01       Impact factor: 6.524

Review 5.  Physicochemical mechanisms of protein regulation by phosphorylation.

Authors:  Hafumi Nishi; Alexey Shaytan; Anna R Panchenko
Journal:  Front Genet       Date:  2014-08-07       Impact factor: 4.599

6.  dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications.

Authors:  Kai-Yao Huang; Tzong-Yi Lee; Hui-Ju Kao; Chen-Tse Ma; Chao-Chun Lee; Tsai-Hsuan Lin; Wen-Chi Chang; Hsien-Da Huang
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

7.  Cooperativity within proximal phosphorylation sites is revealed from large-scale proteomics data.

Authors:  Regev Schweiger; Michal Linial
Journal:  Biol Direct       Date:  2010-01-26       Impact factor: 4.540

Review 8.  Turnover of protein phosphorylation evolving under stabilizing selection.

Authors:  Christian R Landry; Luca Freschi; Taraneh Zarin; Alan M Moses
Journal:  Front Genet       Date:  2014-07-23       Impact factor: 4.599

9.  qPhos: a database of protein phosphorylation dynamics in humans.

Authors:  Kai Yu; Qingfeng Zhang; Zekun Liu; Qi Zhao; Xiaolong Zhang; Yan Wang; Zi-Xian Wang; Ying Jin; Xiaoxing Li; Ze-Xian Liu; Rui-Hua Xu
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

10.  15 years of PhosphoSitePlus®: integrating post-translationally modified sites, disease variants and isoforms.

Authors:  Peter V Hornbeck; Jon M Kornhauser; Vaughan Latham; Beth Murray; Vidhisha Nandhikonda; Alex Nord; Elzbieta Skrzypek; Travis Wheeler; Bin Zhang; Florian Gnad
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

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  1 in total

1.  An intrinsic temporal order of c-JUN N-terminal phosphorylation regulates its activity by orchestrating co-factor recruitment.

Authors:  Christopher A Waudby; Saul Alvarez-Teijeiro; E Josue Ruiz; Simon Suppinger; Nikos Pinotsis; Paul R Brown; Axel Behrens; John Christodoulou; Anastasia Mylona
Journal:  Nat Commun       Date:  2022-10-17       Impact factor: 17.694

  1 in total

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