Literature DB >> 32669442

Structure-based development of a subtype-selective orexin 1 receptor antagonist.

Jan Hellmann1, Matthäus Drabek2, Jie Yin3, Jakub Gunera2, Theresa Pröll1, Frank Kraus1, Christopher J Langmead4, Harald Hübner1, Dorothee Weikert1, Peter Kolb5, Daniel M Rosenbaum6, Peter Gmeiner7.   

Abstract

Orexins are neuropeptides that activate the rhodopsin-like G protein-coupled receptors OX1R and OX2R. The orexin system plays an important role in the regulation of the sleep-wake cycle and the regulation of feeding and emotions. The nonselective orexin receptor antagonist suvorexant has been the first drug on the market targeting the orexin system and is prescribed for the treatment of insomnia. Subtype-selective OX1R antagonists are valuable tools to further investigate the functions and physiological role of the OX1R in vivo and promising lead compounds for the treatment of drug addiction, anxiety, pain or obesity. Starting from the OX1R and OX2R crystal structures bound to suvorexant, we exploited a single amino acid difference in the orthosteric binding site by using molecular docking and structure-based drug design to optimize ligand interactions with the OX1R while introducing repulsive interactions with the OX2R. A newly established enantiospecific synthesis provided ligands showing up to 75-fold selectivity for the OX1R over the OX2R subtype. The structure of a new OX1R antagonist with subnanomolar affinity (JH112) was determined by crystallography in complex with the OX1R and corresponded closely to the docking-predicted geometry. JH112 exhibits high selectivity over a panel of different GPCRs, is able to cross the blood-brain barrier and acts as slowly diffusing and insurmountable antagonist for Gq protein activation and in particular β-arrestin-2 recruitment at OX1R. This study demonstrates the potential of structure-based drug design to develop more subtype-selective GPCR ligands with potentially reduced side effects and provides an attractive probe molecule and lead compound.

Entities:  

Keywords:  GPCR; crystal structure; drug design; orexin receptor; subtype selectivity

Mesh:

Substances:

Year:  2020        PMID: 32669442      PMCID: PMC7395530          DOI: 10.1073/pnas.2002704117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

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Authors:  Terry P Lebold; Pascal Bonaventure; Brock T Shireman
Journal:  Bioorg Med Chem Lett       Date:  2013-07-04       Impact factor: 2.823

2.  The sleep disorder canine narcolepsy is caused by a mutation in the hypocretin (orexin) receptor 2 gene.

Authors:  L Lin; J Faraco; R Li; H Kadotani; W Rogers; X Lin; X Qiu; P J de Jong; S Nishino; E Mignot
Journal:  Cell       Date:  1999-08-06       Impact factor: 41.582

3.  Distribution of orexin receptor mRNA in the rat brain.

Authors:  P Trivedi; H Yu; D J MacNeil; L H Van der Ploeg; X M Guan
Journal:  FEBS Lett       Date:  1998-10-30       Impact factor: 4.124

4.  FRED pose prediction and virtual screening accuracy.

Authors:  Mark McGann
Journal:  J Chem Inf Model       Date:  2011-02-16       Impact factor: 4.956

5.  D-myo-inositol 1-phosphate as a surrogate of D-myo-inositol 1,4,5-tris phosphate to monitor G protein-coupled receptor activation.

Authors:  Eric Trinquet; Michel Fink; Hervé Bazin; Florence Grillet; Fabrice Maurin; Emmanuel Bourrier; Hervé Ansanay; Cédric Leroy; Audrey Michaud; Thierry Durroux; Damien Maurel; Fanny Malhaire; Cyril Goudet; Jean-Philippe Pin; Magali Naval; Olivier Hernout; Françoise Chrétien; Yves Chapleur; Gérard Mathis
Journal:  Anal Biochem       Date:  2006-08-30       Impact factor: 3.365

6.  Structure-based discovery of opioid analgesics with reduced side effects.

Authors:  Aashish Manglik; Henry Lin; Dipendra K Aryal; John D McCorvy; Daniela Dengler; Gregory Corder; Anat Levit; Ralf C Kling; Viachaslau Bernat; Harald Hübner; Xi-Ping Huang; Maria F Sassano; Patrick M Giguère; Stefan Löber; Grégory Scherrer; Brian K Kobilka; Peter Gmeiner; Bryan L Roth; Brian K Shoichet
Journal:  Nature       Date:  2016-08-17       Impact factor: 49.962

7.  Shaping suvorexant: application of experimental and theoretical methods for driving synthetic designs.

Authors:  Georgia McGaughey; Christopher I Bayly; Christopher D Cox; John D Schreier; Michael J Breslin; Michael Bogusky; Steve Pitzenberger; Richard Ball; Paul J Coleman
Journal:  J Comput Aided Mol Des       Date:  2014-02-01       Impact factor: 3.686

8.  Crystallizing membrane proteins using lipidic mesophases.

Authors:  Martin Caffrey; Vadim Cherezov
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

9.  Comparison of Orexin 1 and Orexin 2 Ligand Binding Modes Using X-ray Crystallography and Computational Analysis.

Authors:  Mathieu Rappas; Ammar A E Ali; Kirstie A Bennett; Jason D Brown; Sarah J Bucknell; Miles Congreve; Robert M Cooke; Gabriella Cseke; Chris de Graaf; Andrew S Doré; James C Errey; Ali Jazayeri; Fiona H Marshall; Jonathan S Mason; Richard Mould; Jayesh C Patel; Benjamin G Tehan; Malcolm Weir; John A Christopher
Journal:  J Med Chem       Date:  2020-01-19       Impact factor: 7.446

10.  Reduced number of hypocretin neurons in human narcolepsy.

Authors:  T C Thannickal; R Y Moore; R Nienhuis; L Ramanathan; S Gulyani; M Aldrich; M Cornford; J M Siegel
Journal:  Neuron       Date:  2000-09       Impact factor: 17.173

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  5 in total

1.  Orexin receptors in GtoPdb v.2021.3.

Authors:  Paul Coleman; Luis de Lecea; Anthony Gotter; Jim Hagan; Daniel Hoyer; Thomas Kilduff; Jyrki P Kukkonen; Rod Porter; John Renger; Jerome M Siegel; Gregor Sutcliffe; Neil Upton; Christopher J Winrow
Journal:  IUPHAR BPS Guide Pharm CITE       Date:  2021-09-02

2.  Molecular mechanism of the wake-promoting agent TAK-925.

Authors:  Jie Yin; Yanyong Kang; Aaron P McGrath; Karen Chapman; Megan Sjodt; Eiji Kimura; Atsutoshi Okabe; Tatsuki Koike; Yuhei Miyanohana; Yuji Shimizu; Rameshu Rallabandi; Peng Lian; Xiaochen Bai; Mack Flinspach; Jef K De Brabander; Daniel M Rosenbaum
Journal:  Nat Commun       Date:  2022-05-25       Impact factor: 17.694

Review 3.  Hypocretin/Orexin Receptor Pharmacology and Sleep Phases.

Authors:  Yu Sun; Ryan K Tisdale; Thomas S Kilduff
Journal:  Front Neurol Neurosci       Date:  2021-05-28

4.  Leveraging nonstructural data to predict structures and affinities of protein-ligand complexes.

Authors:  Joseph M Paggi; Julia A Belk; Scott A Hollingsworth; Nicolas Villanueva; Alexander S Powers; Mary J Clark; Augustine G Chemparathy; Jonathan E Tynan; Thomas K Lau; Roger K Sunahara; Ron O Dror
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-21       Impact factor: 11.205

5.  Clinical, Genetic and Functional Characterization of a Novel AVPR2 Missense Mutation in a Woman with X-Linked Recessive Nephrogenic Diabetes Insipidus.

Authors:  Senthil Selvaraj; Dírcea Rodrigues; Navaneethakrishnan Krishnamoorthy; Khalid A Fakhro; Luís R Saraiva; Manuel C Lemos
Journal:  J Pers Med       Date:  2022-01-17
  5 in total

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