Literature DB >> 32663792

Probing the diversity and regulation of tRNA modifications.

Satoshi Kimura1, Veerasak Srisuknimit2, Matthew K Waldor3.   

Abstract

Transfer RNAs (tRNAs) are non-coding RNAs essential for protein synthesis. tRNAs are heavily decorated with a variety of post-transcriptional modifications (tRNA modifications). Recent methodological advances provide new tools for rapid profiling of tRNA modifications and have led to discoveries of novel modifications and their regulation. Here, we provide an overview of the techniques for investigating tRNA modifications and of the expanding knowledge of their chemistry and regulation.
Copyright © 2020 Elsevier Ltd. All rights reserved.

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Year:  2020        PMID： 32663792      PMCID： PMC7722113          DOI： 10.1016/j.mib.2020.06.005

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN： 1369-5274            Impact factor:   7.934


  54 in total

Review 1.  Mass spectrometric identification and characterization of RNA-modifying enzymes.

Authors:  Tsutomu Suzuki; Yoshiho Ikeuchi; Akiko Noma; Takeo Suzuki; Yuriko Sakaguchi
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

2.  Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.

Authors:  Laura Antoine; Philippe Wolff; Eric Westhof; Pascale Romby; Stefano Marzi
Journal:  Biochimie       Date:  2019-07-08       Impact factor: 4.079

3.  Using spectral matching to interpret LC-MS/MS data during RNA modification mapping.

Authors:  Mellie June Paulines; Collin Wetzel; Patrick A Limbach
Journal:  J Mass Spectrom       Date:  2019-11       Impact factor: 1.982

4.  Identification of 2-methylthio cyclic N6-threonylcarbamoyladenosine (ms2ct6A) as a novel RNA modification at position 37 of tRNAs.

Authors:  Byeong-Il Kang; Kenjyo Miyauchi; Michal Matuszewski; Gabriel Silveira D'Almeida; Mary Anne T Rubio; Juan D Alfonzo; Kazuki Inoue; Yuriko Sakaguchi; Takeo Suzuki; Elzbieta Sochacka; Tsutomu Suzuki
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

5.  A hydantoin isoform of cyclic N6-threonylcarbamoyladenosine (ct6A) is present in tRNAs.

Authors:  Michal Matuszewski; Jakub Wojciechowski; Kenjyo Miyauchi; Zofia Gdaniec; Wojciech M Wolf; Tsutomu Suzuki; Elzbieta Sochacka
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

Review 6.  Methods for RNA Modification Mapping Using Deep Sequencing: Established and New Emerging Technologies.

Authors:  Yuri Motorin; Mark Helm
Journal:  Genes (Basel)       Date:  2019-01-09       Impact factor: 4.096

7.  Biogenesis and functions of aminocarboxypropyluridine in tRNA.

Authors:  Mayuko Takakura; Kensuke Ishiguro; Shinichiro Akichika; Kenjyo Miyauchi; Tsutomu Suzuki
Journal:  Nat Commun       Date:  2019-12-05       Impact factor: 14.919

8.  A nutrient-driven tRNA modification alters translational fidelity and genome-wide protein coding across an animal genus.

Authors:  John M Zaborske; Vanessa L Bauer DuMont; Edward W J Wallace; Tao Pan; Charles F Aquadro; D Allan Drummond
Journal:  PLoS Biol       Date:  2014-12-09       Impact factor: 8.029

9.  Detecting RNA base methylations in single cells by in situ hybridization.

Authors:  Rohan T Ranasinghe; Martin R Challand; Kristina A Ganzinger; Benjamin W Lewis; Charlotte Softley; Wolfgang H Schmied; Mathew H Horrocks; Nadia Shivji; Jason W Chin; James Spencer; David Klenerman
Journal:  Nat Commun       Date:  2018-02-13       Impact factor: 14.919

10.  Machine learning of reverse transcription signatures of variegated polymerases allows mapping and discrimination of methylated purines in limited transcriptomes.

Authors:  Stephan Werner; Lukas Schmidt; Virginie Marchand; Thomas Kemmer; Christoph Falschlunger; Maksim V Sednev; Guillaume Bec; Eric Ennifar; Claudia Höbartner; Ronald Micura; Yuri Motorin; Andreas Hildebrandt; Mark Helm
Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971
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  4 in total

1.  Immunoprecipation Assay to Quantify the Amount of tRNAs associated with Their Interacting Proteins in Tissue and Cell Culture.

Authors:  Sarada Das; Amila Zuko; Robin Thompson; Erik Storkebaum; Zoya Ignatova
Journal:  Bio Protoc       Date:  2022-02-20

Review 2.  Recent insights into the structure, function, and regulation of the eukaryotic transfer RNA splicing endonuclease complex.

Authors:  Cassandra K Hayne; Tanae A Lewis; Robin E Stanley
Journal:  Wiley Interdiscip Rev RNA       Date:  2022-02-14       Impact factor: 9.349

Review 3.  tRNA Function and Dysregulation in Cancer.

Authors:  Tania Gupta; Mark G Malkin; Suyun Huang
Journal:  Front Cell Dev Biol       Date:  2022-06-01

Review 4.  Roles of tRNA metabolism in aging and lifespan.

Authors:  Zheng Zhou; Bao Sun; Dongsheng Yu; Meng Bian
Journal:  Cell Death Dis       Date:  2021-05-26       Impact factor: 8.469
  4 in total

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