| Literature DB >> 32662535 |
Motoki Iwasaki1, Sanjeev Budhathoki1, Taiki Yamaji1, Sachiko Tanaka-Mizuno2, Aya Kuchiba3, Norie Sawada1, Atsushi Goto1, Taichi Shimazu1, Manami Inoue1, Shoichiro Tsugane1.
Abstract
The well-known gene-environment interaction between alcohol consumption and aldehyde dehydrogenase 2 (ALDH2) genotype in upper aerodigestive tract cancer risk may improve our ability to identify high-risk subjects. Here, we developed and validated risk prediction models for this cancer in Japanese men and evaluated whether adding the gene-environment interaction to the model improved the predictive performance. We developed two case-cohort datasets in the Japan Public Health Center-based Prospective Study: one from subjects in the baseline survey for model development (108 cases and 4049 subcohort subjects) and the second from subjects in the 5-year follow-up survey for model validation (31 cases and 1527 subcohort subjects). We developed an environmental model including age, smoking status, and alcohol consumption, and a gene-environment interaction model including age, smoking status, and the combination of alcohol consumption and the ALDH2 genotype. We found a statistically significant gene-environment interaction for alcohol consumption and the ALDH2 genotype. The c-index for the gene-environment interaction model (0.71) was slightly higher than that for the environmental model (0.67). The values of integrated discrimination improvement and net reclassification improvement for the gene-environment interaction model were also slightly higher than those for the environmental model. Goodness-of-fit tests suggested that the models were well calibrated. Results from external model validation by the 5-year follow-up survey were consistent with those from the model development by the baseline survey. The addition of a gene-environment interaction to a lifestyle-based model might improve the performance to estimate the probability of developing upper aerodigestive tract cancer for Japanese men.Entities:
Keywords: absolute risk; gene-environment interaction; risk prediction model; single-nucleotide polymorphisms; upper aerodigestive tract cancer
Mesh:
Substances:
Year: 2020 PMID: 32662535 PMCID: PMC7540993 DOI: 10.1111/cas.14573
Source DB: PubMed Journal: Cancer Sci ISSN: 1347-9032 Impact factor: 6.716
FIGURE 1Selection of upper aerodigestive tract cancer (UADTC) cases and subcohort subjects from the baseline survey in the Japan Public Health Center‐based Prospective Study (JPHC Study)
FIGURE 2Selection of upper aerodigestive tract cancer (UADTC) cases and subcohort subjects from the 5‐y follow‐up survey in the Japan Public Health Center‐based Prospective Study (JPHC Study)
Hazard ratios (HR) and 95% confidence intervals (CIs) for upper aerodigestive tract cancer risk according to variables included in the models
| Model | Variable and categories | Number of cases | Number of subcohort subjects | HR | 95% CIs |
|
|---|---|---|---|---|---|---|
| Environmental model | ||||||
| Age, y | ||||||
| <50 | 20 | 1300 | 1.00 | Reference | ||
| 50‐<60 | 52 | 1699 | 2.28 | 1.36‐3.81 | 1.8 × 10−3 | |
| ≥60 | 36 | 1050 | 3.62 | 2.08 ‐ 6.32 | 5.9 × 10−6 | |
| Smoking | ||||||
| Never smoker | 13 | 1184 | 1.00 | Reference | ||
| Past smoker | 29 | 1053 | 2.20 | 1.12‐4.30 | 2.1 × 10−2 | |
| Current smoker | 66 | 1812 | 3.14 | 1.71‐5.77 | 2.3 × 10−4 | |
| Alcohol consumption | ||||||
| Nondrinkers/<5 d per week or < 23 g of ethanol/day | 43 | 2490 | 1.00 | Reference | ||
| ≥5 d per week and ≥23 g of ethanol/day | 65 | 1559 | 2.15 | 1.45‐3.20 | 1.5 × 10−4 | |
| Gene‐environment interaction model | ||||||
| Age, y | ||||||
| <50 | 20 | 1300 | 1.00 | Reference | ||
| 50‐<60 | 52 | 1699 | 2.24 | 1.33‐3.77 | 2.3 × 10−3 | |
| ≥60 | 36 | 1050 | 3.71 | 2.13‐6.48 | 3.9 × 10−6 | |
| Smoking | ||||||
| Never smoker | 13 | 1184 | 1.00 | Reference | ||
| Past smoker | 29 | 1053 | 2.07 | 1.05‐4.08 | 3.5 × 10−2 | |
| Current smoker | 66 | 1812 | 2.94 | 1.58‐5.45 | 6.4 × 10−4 | |
| Combination of alcohol consumption and | ||||||
|
Nondrinkers/<5 d per week or <23 g of ethanol/day + Glu/Glu Nondrinkers/<5 d per week or <23 g of ethanol/day + Glu/Lys + Lys/Lys | 43 | 2490 | 1.00 | Reference | ||
| ≥5 d per week and ≥ 23 g ethanol/day + Glu/Glu | 41 | 1351 | 1.58 | 1.02‐2.46 | 4.1 × 10−2 | |
| ≥5 d per week and ≥ 23 g ethanol/day + Glu/Lys + Lys/Lys | 24 | 208 | 6.00 | 3.53‐10.19 | 3.4 × 10−11 | |
Abbreviation: ALDH2, aldehyde dehydrogenase 2.
Comparison of predictive performance between risk prediction models for upper aerodigestive tract cancer based on case‐cohort subjects from the baseline survey
| C‐index (95% confidence interval) | IDI | Continuous NRI | Categorical NRI | |
|---|---|---|---|---|
| Model | ||||
| Environmental model | 0.67 (0.52‐0.80) | Reference | Reference | Reference |
| Gene‐environment interaction model | 0.71 (0.57‐0.84) | 0.0036 | 0.033 | 0.13 |
Abbreviations: IDI, integrated discrimination improvement; NRI, net reclassification improvement.
Risk category of NRI was defined as <0.25%, ≥0.25%, and <1% and ≥1% 10‐y absolute risk of developing upper aerodigestive tract cancer.
FIGURE 3Observed versus predicted absolute risks for the development of upper aerodigestive tract cancer by quintile categories for an environmental model (A) and gene‐environment interaction model (B) based on case‐cohort subjects from the baseline survey
External validity of the developed risk prediction models based on the case‐cohort subjects from the 5‐y follow‐up survey
| C‐index (95% confidence interval) | IDI | Continuous NRI | Categorical NRI | |
|---|---|---|---|---|
| Model | ||||
| Environmental model | 0.72 (0.44‐0.93) | Reference | Reference | Reference |
| Gene‐environment interaction model | 0.76 (0.50‐0.96) | 0.0089 | 0.37 | 0.16 |
Abbreviations: IDI, integrated discrimination improvement; NRI, net reclassification improvement.
Risk category of NRI was defined as <0.25%, ≥0.25%, and <1%, and ≥1% 10‐y absolute risk of developing upper aerodigestive tract cancer.
FIGURE 4Observed versus predicted absolute risks for the development of upper aerodigestive tract cancer by tertile categories for an environmental model (A) and gene‐environment interaction model (B) based on case‐cohort subjects from the 5‐year follow‐up survey
Ten‐year absolute risk (95% confidence interval) (%) of developing upper aerodigestive tract cancer for men according to risk factor profile based on case‐cohort subjects from the baseline survey
| Age group | Smoking status | Combination of alcohol consumption and | ||
|---|---|---|---|---|
|
Nondrinkers/<5 d per week or <23 g of ethanol/day + Glu/Glu Nondrinkers/<5 d per week or <23 g of ethanol/day + Glu/Lys + Lys/Lys | ≥5 d per week and ≥23 g ethanol/day + Glu/Glu | ≥5 d per week and ≥23 g ethanol/day + Glu/Lys + Lys/Lys | ||
| <50 y old | Never smoker | 0.09 (0.05, 0.18) | 0.15 (0.07, 0.31) | 0.55 (0.23, 1.31) |
| Past smoker | 0.19 (0.10, 0.37) | 0.30 (0.17, 0.55) | 1.15 (0.57, 2.32) | |
| Current smoker | 0.27 (0.16, 0.47) | 0.43 (0.25, 0.74) | 1.63 (0.86, 3.10) | |
| 50‐<60 y old | Never smoker | 0.21 (0.11, 0.40) | 0.33 (0.16, 0.66) | 1.24 (0.55, 2.79) |
| Past smoker | 0.43 (0.23, 0.80) | 0.68 (0.40, 1.16) | 2.58 (1.38, 4.82) | |
| Current smoker | 0.61 (0.40, 0.93) | 0.96 (0.65, 1.42) | 3.65 (2.22, 6.01) | |
| ≥60 y old | Never smoker | 0.34 (0.19, 0.62) | 0.54 (0.27, 1.11) | 2.06 (0.94, 4.50) |
| Past smoker | 0.71 (0.41, 1.23) | 1.13 (0.65, 1.94) | 4.27 (2.38, 7.65) | |
| Current smoker | 1.01 (0.64, 1.58) | 1.59 (0.95, 2.66) | 6.05 (3.49, 10.47) | |
Abbreviation: ALDH2: aldehyde dehydrogenase 2.