Literature DB >> 32657343

Types of Assays for SARS-CoV-2 Testing: A Review.

Marie C Smithgall1, Mitra Dowlatshahi1, Steven L Spitalnik1, Eldad A Hod1, Alex J Rai.   

Abstract

Clinical laboratory testing routinely provides actionable results, which help direct patient care in the inpatient and outpatient settings. Since December 2019, a novel coronavirus (SARS-CoV-2) has been causing disease (COVID-19 [coronavirus disease 2019]) in patients, beginning in China and now extending worldwide. In this context of a novel viral pandemic, clinical laboratories have developed multiple novel assays for SARS-CoV-2 diagnosis and for managing patients afflicted with this illness. These include molecular and serologic-based tests, some with point-of-care testing capabilities. Herein, we present an overview of the types of testing available for managing patients with COVID-19, as well as for screening of potential plasma donors who have recovered from COVID-19. © American Society for Clinical Pathology 2020. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

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Year:  2020        PMID: 32657343      PMCID: PMC7454768          DOI: 10.1093/labmed/lmaa039

Source DB:  PubMed          Journal:  Lab Med        ISSN: 0007-5027


Beginning in December 2019, an outbreak of “pneumonia of unknown cause” was detected in Wuhan City, Hubei Province, China. Ultimately, the 2019 novel coronavirus, or SARS-CoV-2, was identified as the causative agent and subsequently isolated and sequenced.[1] Since that time, SARS-CoV-2 has spread worldwide, causing a severe illness known as COVID-19 (coronavirus disease 2019), which led the World Health Organization (WHO) to declare it a pandemic on March 11, 2020.[2] Since the beginning of the outbreak, clinical laboratories have been developing various assays to aid in detecting SARS-CoV-2 and clinically managing patients with COVID-19. The 3 categories of tests used to detect current or past viral infection are molecular, serologic, and antigen-detection assays (Table 1). In this context, a molecular assay is used to determine whether a patient is actively infected with the pathogen of interest. Reverse transcription polymerase chain reaction (RT-PCR) is a common laboratory technique used to detect respiratory viral pathogens, such as influenza and respiratory syncytial virus (RSV).[3] Currently, this is the main type of test being utilized to determine whether patients are infected with SARS-CoV-2.
Table 1.

Clinical Laboratory Testing Types

Test TypePatient Specimen TypeDetectionClinical UtilityNecessary ReagentsDevelopment Time
Nucleic acid amplification (ie, RT-PCR, isothermal amplification)NP swabaRNAActive infectionOligo primers Fastest: oligonucleotide production and molecular assay development (takes days to weeks)
SerologySerumIgM and/or IgG, or total antibodiesPast exposure; immune status Recombinant/purified protein Intermediate: production of viral protein (recombinant/purified) and assay development/optimization (takes 2 to several weeks)
Protein detectionNP swab and/or other clinical fluidsaViral antigenActive infectionAntibody to viral protein(s) Slowest: requires antibody production, assay development, and optimization (takes several weeks to months)

Abbreviations: RT-PCR, reverse transcription polymerase chain reaction; NP, nasopharyngeal; Ig, immunoglobulin.

aNP swabs are difficult to access using this method.

Clinical Laboratory Testing Types Abbreviations: RT-PCR, reverse transcription polymerase chain reaction; NP, nasopharyngeal; Ig, immunoglobulin. aNP swabs are difficult to access using this method. RT-PCR is a sensitive technique for RNA detection, whereby RNA is reverse transcribed into complementary DNA (cDNA) and cDNA targets specific for the pathogen of interest are amplified. If SARS-CoV-2 RNA is present in a patient specimen, typically collected as a nasopharyngeal (NP) or anterior nasal swab,[4] it will be detected by this assay. Depending on the platform, these assays can be completed in less than 1 hour to several hours, once the specimen arrives in the laboratory and is loaded onto the platform. The caveats to interpreting results from this assay type are that doing so does not inform us whether a patient previously had the infection; rather, this type of assay only detects patients actively shedding virus (current infection or carriage state) or those who have residual viral RNA present. Therefore, these assays are most useful in acute settings to detect patients with COVID-19, where the results can inform appropriate isolation protocols and ensure that appropriate personal protective equipment (PPE) protocols are utilized when treating these patients. As of the date of publication of this article, of the 102 commercial laboratories and/or test kit manufacturers approved for emergency use by the United States Food and Drug Administration (FDA) for SARS-CoV-2 testing, 81 of them were molecular assays (Table 2). We note that many of these commercial assays require a laboratory to have vendor-specific instrumentation and equipment to utilize these test kits. The FDA also has authorized 37 molecular-based laboratory developed tests (LDTs) that can be used in the single laboratory that developed the test.
Table 2.

Current FDA Emergency Use Authorized SARS-CoV-2 Assays, as of May 26, 2020

Molecular
ManufacturerTest NameAssay Type
1drop Inc.1copy COVID-19 qPCR Multi KitRT-PCR
Abbott Diagnostics Scarborough, Inc.ID NOW COVID-19Isothermal nucleic acid amplification
Abbott MolecularAbbott RealTime SARS-CoV-2 assayRT-PCR
Abbott Molecular Inc.Alinity m SARS-CoV-2 assayRT-PCR
Altona Diagnostics GmbHRealStar SARS-CoV02 RT-PCR Kits U.S.RT-PCR
Applied BioCode, Inc.BioCode SARS-CoV-2 AssayRT-PCR
Applied DNA Sciences, Inc.Linea COVID-19 Assay KitRT-PCR
Assurance Scientific LaboratoriesAssurance SARS-CoV-2 PanelRT-PCR
Atila BioSystems, Inc.iAMP COVID-19 Detection KitIsothermal amplification test
Avellino Lab USA, Inc.AvellinoCoV2 testRT-PCR
Becton, Dickinson & CompanyBD SARS-CoV-2Reagents for BD MAX SystemRT-PCR
Becton, Dickinson & Company (BD)BioGX SARS-CoV-2 Reagents for BD MAX SystemRT-PCR
BGI Genomics Co. LtdReal-Time Fluorescent RT-PCR Kit for Detecting SARS-2019-nCoVRT-PCR
BioCore Co., Ltd.BioCore 2019-nCoV Real Time PCR KitRT-PCR
Bio-Rad Laboratories, IncBio-Rad SARS-CoV-2 ddPCR TestRT-PCR
BioFire Defense, LLCBioFire COVID-19 TestRT-PCR
BioFire Defense, LLCBioFire Respiratory Panel 2.1 (RP2.1) *panel includes 20 other viral or bacterial pathogensRT-PCR
BioMérieux SASARS-COV-2 R-GENERT-PCR
Centers for Disease Control and Prevention’s (CDC)CDC 2019-nCoV Real-Time RT-PCR Diagnostic Panel (CDC)RT-PCR
CepheidXpert Xpress SARS-CoV-2 testRT-PCR
ChromaCode Inc.HDPCR SARS-CoV-2 AssayRT-PCR
Co-Diagnostics, Inc.Logix Smart Coronavirus Disease 2019 (COVID-19) KitRT-PCR
Cue Health Inc.Cue COVID-19 TestIsothermal nucleic acid amplification
dba SpectronRxHymon SARS-CoV-2 Test KitRT-PCR
DiaCarta, IncQuantiVirus SARS-CoV-2 Test kitRT-PCR
DiaSorin Molecular LLCSimplexa COVID-19 Direct assayRT-PCR
Everlywell, Inc.Everlywell COVID-19 Test Home Collection KitRT-PCR
Euroimmun US Inc.EURORealTime SARS-CoV-2RT-PCR
Fast Track Diagnostics Luxembourg S.á.r.l.FTD SARS-CoV-2RT-PCR
Fosun Pharma USA Inc.Fosun COVID-19 RT-PCR Detection KitRT-PCR
Fulgent Therapeutics, LLCFulgent COVID-19 by RT-PCR TestRT-PCR
GeneMatrix, Inc.NeoPlex COVID-19 Detection KitRT-PCR
Genetron Health (Beijing) Co., Ltd.Genetron SARS-CoV-2 RNA TestRT-PCR
GenMark Diagnostics, Inc.ePlex SARS-CoV-2 TestPCR, electrochemical detection (voltammetry)
GenoSensor, LLCGS™ COVID-19 RT-PCR KITRT-PCR
Gnomegen LLCGnomegen COVID-19 RT-Digital PCR Detection KitRT-PCR
Gnomegen LLCGnomegen COVID-19-RT-qPCR Detection KitRT-PCR
Gravity Diagnostics, LLCGravity Diagnostics COVID-19 AssayRT-PCR
Hologic, Inc.Aptima SARS-CoV-2 assayTarget capture, transcription mediated amplification and dual kinetic assay
Hologic, Inc.Panther Fusion SARS-CoV-2RT-PCR
Illumina, Inc.Illumina COVIDSeq TestNext-Generation Sequencing (NGS)
InBios International, IncSmart Detect SARS-CoV-2 rRT-PCR KitRT-PCR
Ipsum Diagnostics, LLCCOV-19 IDx assayRT-PCR
Kaiser Permanente Mid-Atlantic StatesKPMAS COVID-19 TestRT-PCR
KorvaLabs Inc.Curative-Korva SARS-Cov-2 AssayRT-PCR
LabGenomics Co., Ltd.LabGun COVID-19 RT-PCR KitRT-PCR
Laboratory Corporation of America (LabCorp)COVID-19 RT-PCR TestRT-PCR
Luminex CorporationARIES SARS-CoV-2 AssayRT-PCR
Luminex Molecular Diagnostics, Inc.NxTAG CoV Extended Panel AssayRT-PCR
Maccura Biotechnology (USA) LLCSARS-CoV-2 Fluorescent PCR KitRT-PCR
Mesa Biotech Inc.Accula SARS-Cov-2 TestPCR and lateral flow assay
NeuMoDx Molecular, Inc.NeuMoDx SARS-CoV-2 AssayRT-PCR
OPTI Medical Systems, Inc.OPTI SARS-CoV-2 RT PCR TestRT-PCR
OSANG HealthcareGeneFinder COVID-19 Plus RealAmp KitRT-PCR
P23 Labs, LLC.P23 Labs TaqPath SARS-CoV-2 AssayRT-PCR
PerkinElmer, Inc.PerkinElmer New Coronavirus Nucleic Acid Detection KitRT-PCR
Phosphorus Diagnostics LLCPhosphorus COVID-19 RT-qPCR TestRT-PCR
Primerdesign Ltd.Primerdesign Ltd COVID-19 genesig Real-Time PCR assayRT-PCR
PrivaPath Diagnostics, Inc.LetsGetChecked Coronavirus (COVID-19) TestRT-PCR
QIAGEN GmbHQIAstat-Dx Respiratory SARS-CoV-2 Panel *panel includes 22 other viral or bacterial pathogensRT-PCR
Quest Diagnostics Infectious Disease, Inc.Quest SARS-CoV-2 rRT-PCRRT-PCR
Quidel CorporationLyra SARS-CoV-2 AssayRT-PCR
Quidel CorporationLyra Direct SARS-CoV-2 AssayRT-PCR
Rheonix, Inc.Rheonix COVID-19 MDx AssayRT-PCR
Roche Molecular Systems, Inc. (RMS)cobas SARS-CoV-2RT-PCR
RTA Laboratories Biological Products Pharmaceutical and Machinery IndustryDiagnovital SARS-CoV-2 Real-Time PCR KitRT-PCR
Rutgers Clinical Genomics Laboratory at RUCDR Infinite Biologics - Rutgers UniversityRutgers Clinical Genomics Laboratory TaqPath SARS-CoV-2-AssayRT-PCR
Sansure BioTech Inc.Novel Coronavirus (2019-nCoV) Nucleic Acid Diagnostic Kit (PCR-Fluorescence Probing)RT-PCR
ScienCell Research LaboratoriesScienCell SARS-CoV-2 Coronavirus Real-time RT-PCR (RT-qPCR) Detection KitRT-PCR
SD Biosensor, Inc.STANDARD M nCoV Real-Time Detection KitRT-PCR
Seasun BiomaterialsU-TOP COVID-19 Detection KitRT-PCR
Seasun Biomaterials, Inc.AQ-TOP COVID-19 Rapid Detection KitRT-LAMP
Seegene, Inc.Allplex 2019-nCoV AssayRT-PCR
Sherlock BioSciences, Inc.Sherlock CRISPR SARS-CoV-2 KitCRISPR
SolGent Co., Ltd.DiaPlexQ Novel Coronavirus (2019-nCoV) Detection KitRT-PCR
TBG Biotechnology Corp.ExProbe SARS-CoV-2 Testing KitRT-PCR
Thermo Fisher Scientific, Inc.TaqPath COVID-19 Combo KitRT-PCR
Tide Laboratories, LLCDTPM COVID-19 RT-PCR TestRT-PCR
Trax Management Services Inc.PhoenixDx 2019-CoVRT-PCR
Wadsworth Center, New York State Department of Public Health’s (CDC)New York SARS-CoV-2 Real-time Reverse Transcriptase (RT)-PCR Diagnostic PanelRT-PCR
Zymo Research CorporationQuick SARS-CoV-2rRT-PCR KitRT-PCR
Serology
Manufacturer Test Name Assay Type
Abbott Laboratories Inc.SARS-CoV-2 IgG assayChemiluminescent microparticle immunoassay
Autobio Diagnostics Co. Ltd.Anti-SARS-CoV-2 Rapid Test IgM and IgGLateral flow immunoassay
Bio-Rad Laboratories, IncPlatelia SARS-CoV-2 Total Ab assayEnzyme-Linked Immunosorbent Assays (ELISA)
Cellex Inc.qSARS-CoV-2 IgG/IgM Rapid TestLateral flow immunoassay
Chembio Diagnostic System, Inc.DPP COVID-19 IgM/IgG SystemImmunochromatography
DiaSorin Inc.LIAISON SARS-CoV-2 S1/S2 IgGChemiluminescent immunoassay
Emory Medical LaboratoriesSARS-CoV-2 RBD IgG testEnzyme-Linked Immunosorbent Assays (ELISA)
EUROIMMUN US Inc.Anti-SARS-CoV-2 ELISA (IgG)Enzyme-Linked Immunosorbent Assays (ELISA)
Hangzhou Biotest Biotech Co., Ltd.RightSign COVID-19 IgG/IgM Rapid Test CassetteLateral flow chromatographic immunoassay
Healgen Scientific LLCCOVID-19 IgG/IgM Rapid Test CassetteLateral flow immunoassay
InBios International, Inc.SCoV-2 Detect IgG ELISAELISA
Mount Sinai LaboratoryCOVID-19 ELISA IgG Antibody TestEnzyme-Linked Immunosorbent Assays (ELISA)
Ortho Clinical Diagnostics, Inc.VITROS Immunodiagnostic Products Anti-SARS-CoV-2 Total Reagent PackImmunometric luminescence
Ortho-Clinical Diagnostics, Inc.VITROS Immunodiagnostic Products Anti-SARS-CoV-2 IgG Reagent PackImmunometric luminescence
Roche DiagnosticsElecsys Anti-SARS-CoV-2Electrochemiluminescence Immunoassay
Siemens Healthcare Diagnostics Inc.Dimension Vista SARS-CoV-2 Total antibody assay (COV2T)Chemiluminescent immunoassay
Dimension EXL SARS-CoV-2 Total antibody assay (CV2T)Chemiluminescent immunoassay
Atellica IM SARS-CoV-2 Total (COV2T)Chemiluminescent immunoassay
ADVIA Centaur SARS-CoV-2 Total (COV2T)Chemiluminescent immunoassay
Vibrant America Clinical LabsVibrant COVID-19 Ab AssayChemiluminescence immunoassay
Wadsworth Center, New York State Department of HealthNew York SARS-CoV Microsphere Immunoassay for Antibody DetectionMicrosphere Immunoassay
Antigen
Manufacturer Test Name Assay Type
Quidel CorporationSofia 2 SARS Antigen FIALateral flow immunofluorescent sandwich assay

Abbreviations: FDA, United States Food and Drug Administration; qPCR, quantitative polymerase chain reaction; RT-PCR, reverse transcriptase polymerase chain reaction; ddPCR, droplet digital polymerase chain reaction; CDC, Centers for Disease Control and Prevention; PCR, polymerase chain reaction; Ig, immunoglobulin; ELISA, enzyme-linked immunosorbent assay; FIA, fluorescence immunoassay analyzer.

aAs of May 26, 2020. For the most up-to-date list, please refer to: https://www.fda.gov/medical-devices/emergency-situations-medical-devices/emergency-use-authorizations. We also note that based on the FDA policy for Diagnostic Tests for Coronavirus Disease–2019 during the Public Health Emergency issued on March 16, 2020, commercial manufacturers can develop and distribute serology tests without an emergency-use authorization (EUA), as long as the test has been validated and the FDA is notified.

bPanel includes 20 other viral or bacterial pathogens.

Current FDA Emergency Use Authorized SARS-CoV-2 Assays, as of May 26, 2020 Abbreviations: FDA, United States Food and Drug Administration; qPCR, quantitative polymerase chain reaction; RT-PCR, reverse transcriptase polymerase chain reaction; ddPCR, droplet digital polymerase chain reaction; CDC, Centers for Disease Control and Prevention; PCR, polymerase chain reaction; Ig, immunoglobulin; ELISA, enzyme-linked immunosorbent assay; FIA, fluorescence immunoassay analyzer. aAs of May 26, 2020. For the most up-to-date list, please refer to: https://www.fda.gov/medical-devices/emergency-situations-medical-devices/emergency-use-authorizations. We also note that based on the FDA policy for Diagnostic Tests for Coronavirus Disease–2019 during the Public Health Emergency issued on March 16, 2020, commercial manufacturers can develop and distribute serology tests without an emergency-use authorization (EUA), as long as the test has been validated and the FDA is notified. bPanel includes 20 other viral or bacterial pathogens. Given that true NP specimens are often difficult to obtain, the FDA has stated that oropharyngeal (OP), nasal midturbinate, and anterior nares swabs are acceptable when using an NP swab is not possible.[4] Also, the FDA recently granted an Emergency-Use Authorization (EUA) to Rutgers Clinical Genomics Laboratory-Rutgers University for an RT-PCR LDT for qualitative detection of SARS-CoV-2 in saliva specimens as well as OP, NP, anterior nasal, and midturbinate nasal swabs. Saliva testing presents potential benefits of eliminating the need for swabs and decreasing the risk posed to the health-care workers collecting these specimens. However, this specimen type might require additional dilution or pretreatment due to its viscosity. Also, viral RNA might be more difficult to detect in this specimen type, although the results of a previous study[5] found that saliva and NP specimens were comparable for detection of respiratory viruses by RT-PCR. The possibility of false negative results with molecular assays should also be considered. One report[6] documents a patient with multiple RT-PCR NP/OP specimens that tested negative; this patient ultimately had SARS-CoV-2 detected in a bronchoalveolar lavage (BAL) fluid specimen. For lower respiratory tract specimens, currently, the FDA recommends testing BAL fluid only under certain clinical circumstances such as invasive mechanical ventilation. Sputum should be tested from patients who develop a productive cough, although the FDA does not recommend induction of sputum for SARS-CoV-2 testing.[4] The other main type of assay is serological. These assays determine the exposure history and/or immune status of a patient. They detect the presence of antibodies against SARS-CoV-2 antigens in serum, plasma, or whole blood specimens. After initial viral infection, there is a delay before the production of antibodies by the immune system (Figure 1). During this time, known as the window period, a patient who is infected with SARS-CoV-2 but has no detectable antibodies, would have negative test results on a serologic assay. Typically, when the immune system mounts a response against a virus, short-lived immunoglobulin (Ig)M antibodies are initially produced, followed by a more durable IgG antibody response. However, there are limited data thus far in the literature regarding the longevity of anti–SARS-CoV-2 antibodies.
Figure 1

SARS-CoV-2 estimated seroconversion rates.

SARS-CoV-2 estimated seroconversion rates. The graph in Figure 1 demonstrates estimated viral RNA, IgM, and IgG detection levels for SARS-CoV-2 based on the limited published literature to date. The estimated median seroconversion time is 7 to 12 days; most patients with COVID-19 have detectable antibodies approximately 15 days after the onset of symptoms. Due to the subjectivity in determining symptom onset, these dates can be highly variable. Also, viral RNA has been shown to peak in the first week of illness and then gradually decline. Serological tests can be unique to one class of immunoglobulins; can detect IgM and IgG antibodies simultaneously; or can be total antibody tests, which detect IgA antibodies as well. Depending on the exact protocol and platform, such assays can typically be completed in 1 to 2 hours once a specimen arrives in the laboratory and is loaded onto the relevant platform. We note, however, that at the time of publication of this article, there are a few commercial assays available on large, automated analyzers, from diagnostic manufacturers including Roche Diagnostics, Abbott Diagnostics, and Ortho Clinical Diagnostics (with offerings more recently available from Beckman Coulter, Inc and Siemens AG). However, to our knowledge, there are no objective, peer-reviewed data on their performance characteristics. Many available commercial serological assays use a lateral flow assay format; for many of these assays, there are unsubstantiated, or even false, claims about test performance.[7]The estimated median seroconversion time is 7 to 12 days, with virtually all patients with COVID-19 having detectable antibodies approximately 15 days after onset of symptoms.[8-10] However, the results of a recent acute antibody response study[11] demonstrated simultaneous or sequential IgM and IgG seroconversion, with a slight decrease in IgM antibody titers 3 weeks after symptom onset. Therefore, these assays will be most helpful in determining the exposure status of an individual and in assessing the immune response of that person to SARS-CoV-2. Because SARS-CoV-2 is a new virus, it is not clear whether an immune response confers immunity and how long the immune response will last—that is, whether it is durable and sustained (years) or if it is short-lived (1–2 months). These assays can be particularly helpful for individuals who may have had symptoms consistent with COVID-19 but who were never tested with an RT-PCR test (due to the severe limitations in testing capabilities in many areas) and now have recovered from their illness. Currently, the Centers for Disease Control and Prevention (CDC) does not recommend using serology testing to determine eligibility to return to the in-person workforce. Individuals who were symptomatic can stop self-isolation as long as their symptoms have improved with 3 days of no fever and at least 10 days have elapsed since the onset of their symptoms.[12] Finally, these tests can also be used in serosurveillance, in which data are obtained to calculate the prevalence of anti–SARS-CoV-2 antibodies in the community. Such information can help epidemiologists better understand the true burden of disease and to model continued viral-transmission dynamics based on the percentage of the population that is immune vs susceptible. Given that approximately 80% of COVID-19 cases are mild to moderate in severity[10,13] and that molecular testing has been restricted to the most severely ill patients, the true number of cases has likely not been revealed by molecular-based assays. Thus, serological testing can provide a more accurate enumeration of the number of past infections. As with all laboratory testing, however, the results of these assays will only be accurate and maximally useful based on their performance characteristics, including sensitivity and specificity. COVID-19 testing is also important for identifying potential patients who have recovered from COVID-19 and have detectable antibodies against SARS-CoV-2 (convalescent donors) for clinical trials. Currently, studies are underway in which convalescent donors can donate plasma, which can then be transfused into critically ill patients with COVID-19. A review of the published literature to date[14] indicates that treatment with plasma from convalescent donors demonstrates beneficial effects, although further evaluation with clinical trials remains imperative. Potential donors require a serologic assay to detect the presence of anti–SARS-CoV-2 antibodies in their plasma. For this type of plasma to be beneficial, the antibodies present should have neutralizing activity (ie, the antibodies bind to and neutralize infection by active SARS-CoV-2 virus). Such testing is not currently performed in clinical laboratories but rather in research laboratories. Ideally, convalescent plasma donors would be noninfectious (symptom-free for >14 days) and have high titers of virus-neutralizing antibodies (as determined by serologic testing). Point-of-care (POC) testing is beginning to be available for SARS-CoV-2. POC testing refers to a broad category of diagnostic tests that can be performed where patient care occurs. Functionally, these tests have a rapid turnaround time (TAT) and can potentially be performed by various nonlaboratory clinical personnel. These assays can be molecular or serologic. One molecular POC test by Abbott Diagnostics uses isothermal nucleic acid amplification (a technique similar to polymerase chain reaction [PCR]) to detect SARS-CoV-2 in approximately 15 minutes. The results of recent studies[15-17] have demonstrated low sensitivity for the Abbott ID Now assay with specimens collected in transport media. Thus, the EUA for this test was modified for testing only from direct/dry swabs. The Cellex serologic POC qSARS-CoV-2 IgG/IgM Rapid Test (Cellex, Inc.) utilizes a lateral flow immunoassay, which qualitatively detects IgM and/or IgG antibodies from whole-blood specimens. A blood specimen flows by capillary action along the cassette and, if anti–SARS-CoV-2 IgM or IgG antibodies are present, they will bind to recombinant SARS-CoV-2 antigens present on the test strip. The presence of these antibody-antigen complexes are then detected by a colorimetric change, which is revealed when the complexes are captured by anti–human IgG or anti–human IgM antibodies. The results are available in approximately 15 to 20 minutes. Of note, currently POC serology tests must be performed in conjunction with a CLIA (Clinical Laboratory Improvement Amendments)–licensed laboratory and cannot be performed in locations with only a CLIA waiver, such as a physician office. Finally, there is now an antigen detection assay available from Quidel Corporation (Sofia 2 SARS Antigen FIA) that uses a lateral flow immunofluorescent sandwich assay technique for detection of the nucleocapsid protein antigen of SARS-CoV and SARS-CoV-2. In theory, viral proteins can be detected using one of a number of antigen capture methods (eg, antibodies, aptamers). Such tests are used routinely for other viral assays (eg, human immunodeficiency virus [HIV] p24 antigen as part of 4th- and 5th-generation HIV tests), and also for hepatitis B surface antigen.[18] Like molecular assays, antigen detection tests can be used to detect active SARS-CoV-2 infection. In summary, molecular and serological tests provide meaningful data for treating patients with COVID-19. However, each category has different clinical utility, different characteristics, and different limitations. Clinical laboratories continue to develop new assays and implement increased testing capabilities to meet the high demands for patient testing during this pandemic. Personal and Professional Conflicts of Interest None reported.
  12 in total

1.  Comparison between Saliva and Nasopharyngeal Swab Specimens for Detection of Respiratory Viruses by Multiplex Reverse Transcription-PCR.

Authors:  Young-Gon Kim; Seung Gyu Yun; Min Young Kim; Kwisung Park; Chi Hyun Cho; Soo Young Yoon; Myung Hyun Nam; Chang Kyu Lee; Yun-Jung Cho; Chae Seung Lim
Journal:  J Clin Microbiol       Date:  2016-12-28       Impact factor: 5.948

2.  Antibody responses to SARS-CoV-2 in patients with COVID-19.

Authors:  Quan-Xin Long; Bai-Zhong Liu; Hai-Jun Deng; Gui-Cheng Wu; Kun Deng; Yao-Kai Chen; Pu Liao; Jing-Fu Qiu; Yong Lin; Xue-Fei Cai; De-Qiang Wang; Yuan Hu; Ji-Hua Ren; Ni Tang; Yin-Yin Xu; Li-Hua Yu; Zhan Mo; Fang Gong; Xiao-Li Zhang; Wen-Guang Tian; Li Hu; Xian-Xiang Zhang; Jiang-Lin Xiang; Hong-Xin Du; Hua-Wen Liu; Chun-Hui Lang; Xiao-He Luo; Shao-Bo Wu; Xiao-Ping Cui; Zheng Zhou; Man-Man Zhu; Jing Wang; Cheng-Jun Xue; Xiao-Feng Li; Li Wang; Zhi-Jie Li; Kun Wang; Chang-Chun Niu; Qing-Jun Yang; Xiao-Jun Tang; Yong Zhang; Xia-Mao Liu; Jin-Jing Li; De-Chun Zhang; Fan Zhang; Ping Liu; Jun Yuan; Qin Li; Jie-Li Hu; Juan Chen; Ai-Long Huang
Journal:  Nat Med       Date:  2020-04-29       Impact factor: 53.440

Review 3.  p24 revisited: a landscape review of antigen detection for early HIV diagnosis.

Authors:  Eleanor R Gray; Robert Bain; Olivia Varsaneux; Rosanna W Peeling; Molly M Stevens; Rachel A McKendry
Journal:  AIDS       Date:  2018-09-24       Impact factor: 4.177

4.  Impact of viral multiplex real-time PCR on management of respiratory tract infection: a retrospective cohort study.

Authors:  Lena M Mayer; Christian Kahlert; Frank Rassouli; Pietro Vernazza; Werner C Albrich
Journal:  Pneumonia (Nathan)       Date:  2017-02-25

5.  Comparison of Abbott ID Now and Abbott m2000 Methods for the Detection of SARS-CoV-2 from Nasopharyngeal and Nasal Swabs from Symptomatic Patients.

Authors:  Amanda Harrington; Brian Cox; Jennifer Snowdon; Jonathan Bakst; Erin Ley; Patricia Grajales; Jack Maggiore; Stephen Kahn
Journal:  J Clin Microbiol       Date:  2020-07-23       Impact factor: 5.948

6.  Temporal profiles of viral load in posterior oropharyngeal saliva samples and serum antibody responses during infection by SARS-CoV-2: an observational cohort study.

Authors:  Kelvin Kai-Wang To; Owen Tak-Yin Tsang; Wai-Shing Leung; Anthony Raymond Tam; Tak-Chiu Wu; David Christopher Lung; Cyril Chik-Yan Yip; Jian-Piao Cai; Jacky Man-Chun Chan; Thomas Shiu-Hong Chik; Daphne Pui-Ling Lau; Chris Yau-Chung Choi; Lin-Lei Chen; Wan-Mui Chan; Kwok-Hung Chan; Jonathan Daniel Ip; Anthony Chin-Ki Ng; Rosana Wing-Shan Poon; Cui-Ting Luo; Vincent Chi-Chung Cheng; Jasper Fuk-Woo Chan; Ivan Fan-Ngai Hung; Zhiwei Chen; Honglin Chen; Kwok-Yung Yuen
Journal:  Lancet Infect Dis       Date:  2020-03-23       Impact factor: 25.071

7.  Negative Nasopharyngeal and Oropharyngeal Swabs Do Not Rule Out COVID-19.

Authors:  Poramed Winichakoon; Romanee Chaiwarith; Chalerm Liwsrisakun; Parichat Salee; Aree Goonna; Atikun Limsukon; Quanhathai Kaewpoowat
Journal:  J Clin Microbiol       Date:  2020-04-23       Impact factor: 5.948

8.  Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study.

Authors:  Nanshan Chen; Min Zhou; Xuan Dong; Jieming Qu; Fengyun Gong; Yang Han; Yang Qiu; Jingli Wang; Ying Liu; Yuan Wei; Jia'an Xia; Ting Yu; Xinxin Zhang; Li Zhang
Journal:  Lancet       Date:  2020-01-30       Impact factor: 79.321

9.  Evaluation of the COVID19 ID NOW EUA assay.

Authors:  Stephanie L Mitchell; Kirsten St George
Journal:  J Clin Virol       Date:  2020-05-15       Impact factor: 3.168

Review 10.  Immune responses and pathogenesis of SARS-CoV-2 during an outbreak in Iran: Comparison with SARS and MERS.

Authors:  Mohsen Rokni; Vida Ghasemi; Zahra Tavakoli
Journal:  Rev Med Virol       Date:  2020-04-08       Impact factor: 6.989

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  23 in total

1.  Comparison of two nucleic acid amplification tests (NAATs) and two antigen tests for detection of SARS-CoV-2 from upper respiratory specimens.

Authors:  Peiting Kuo; Susan Realegeno; David T Pride
Journal:  J Clin Virol Plus       Date:  2021-04-03

Review 2.  Review of Current COVID-19 Diagnostics and Opportunities for Further Development.

Authors:  Yan Mardian; Herman Kosasih; Muhammad Karyana; Aaron Neal; Chuen-Yen Lau
Journal:  Front Med (Lausanne)       Date:  2021-05-07

3.  Prevention of SARS-CoV-2 Infection Among Police Officers in Poland-Implications for Public Health Policies.

Authors:  Filip Raciborski; Mateusz Jankowski; Mariusz Gujski; Jarosław Pinkas; Piotr Samel-Kowalik; Artur Zaczyński; Igor Pańkowski; Kamil Rakocy; Waldemar Wierzba
Journal:  Int J Environ Res Public Health       Date:  2020-12-04       Impact factor: 3.390

4.  Evaluation of Humoral Immunity to SARS-CoV-2: Diagnostic Value of a New Multiplex Addressable Laser Bead Immunoassay.

Authors:  Laurent Drouot; Sébastien Hantz; Fabienne Jouen; Aurélie Velay; Bouchra Lamia; Benoit Veber; Jean Sibilia; Marlène Lotellier; Sophie Candon; Sophie Alain; Samira Fafi-Kremer; Olivier Boyer
Journal:  Front Microbiol       Date:  2020-11-26       Impact factor: 5.640

5.  Limits and Opportunities of SARS-CoV-2 Antigen Rapid Tests: An Experienced-Based Perspective.

Authors:  Verena Schildgen; Sabrina Demuth; Jessica Lüsebrink; Oliver Schildgen
Journal:  Pathogens       Date:  2021-01-05

Review 6.  A Comprehensive Review of Detection Methods for SARS-CoV-2.

Authors:  Aziz Eftekhari; Mahdieh Alipour; Leila Chodari; Solmaz Maleki Dizaj; Mohammadreza Ardalan; Mohammad Samiei; Simin Sharifi; Sepideh Zununi Vahed; Irada Huseynova; Rovshan Khalilov; Elham Ahmadian; Magali Cucchiarini
Journal:  Microorganisms       Date:  2021-01-22

Review 7.  Wuhan to World: The COVID-19 Pandemic.

Authors:  Ashok Kumar; Rita Singh; Jaskaran Kaur; Sweta Pandey; Vinita Sharma; Lovnish Thakur; Sangeeta Sati; Shailendra Mani; Shailendra Asthana; Tarun Kumar Sharma; Susmita Chaudhuri; Sankar Bhattacharyya; Niraj Kumar
Journal:  Front Cell Infect Microbiol       Date:  2021-03-30       Impact factor: 5.293

Review 8.  Landscape of humoral immune responses against SARS-CoV-2 in patients with COVID-19 disease and the value of antibody testing.

Authors:  Sundarasamy Mahalingam; John Peter; Ziyang Xu; Devivasha Bordoloi; Michelle Ho; Vaniambadi S Kalyanaraman; Alagarsamy Srinivasan; Kar Muthumani
Journal:  Heliyon       Date:  2021-04-17

9.  SARS-CoV-2 diagnostics: Towards a more comprehensive approach to routine patient testing.

Authors:  Clive Carter; Pamela Hughes; Anna McHugh; Fatima Nadat; Penny Lewthwaite; Sinisa Savic; Brendan Clark
Journal:  J Immunol Methods       Date:  2021-03-27       Impact factor: 2.303

10.  Direct RT-PCR amplification of SARS-CoV-2 from clinical samples using a concentrated viral lysis-amplification buffer prepared with IGEPAL-630.

Authors:  Alejandro Castellanos-Gonzalez; Thomas R Shelite; Nicole Lloyd; Aygul Sadiqova; Ren Ping; Natalie Williams-Bouyer; Peter C Melby; Bruno L Travi
Journal:  Sci Rep       Date:  2021-07-09       Impact factor: 4.996

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