| Literature DB >> 32650556 |
Tarek S Ibrahim1,2, Ehab S Taher3, Ebtihal Samir4, Azizah M Malebari1, Ahdab N Khayyat1, Mamdouh F A Mohamed5, Riham M Bokhtia2,6, Mohammed A AlAwadh1, Israa A Seliem2,6, Hani Z Asfour7, Nabil A Alhakamy8, Siva S Panda6, Amany M M Al-Mahmoudy2.
Abstract
Two sets of diphenyl ether derivatives incorporating five-membered 1,3,4-oxadiazoles, and their open-chain aryl hydrazone analogs were synthesized in good yields. Most of the synthesized compounds showed promising in vitro antimycobacterial activity against Mycobacterium tuberculosis H37Rv. Three diphenyl ether derivatives, namely hydrazide 3, oxadiazole 4 and naphthylarylidene 8g exhibited pronounced activity with minimum inhibitory concentrations (MICs) of 0.61, 0.86 and 0.99 μg/mL, respectively compared to triclosan (10 μg/mL) and isoniazid (INH) (0.2 μg/mL). Compounds 3, 4, and 8g showed the InhA reductase enzyme inhibition with higher IC50 values (3.28-4.23 µM) in comparison to triclosan (1.10 µM). Correlation between calculated physicochemical parameters and biological activity has been discussed which justifies a strong correlation with respect to the inhibition of InhA reductase enzyme. Molecular modeling and drug-likeness studies showed good agreement with the obtained biological evaluation. The structural and experimental information concerning these three InhA inhibitors will likely contribute to the lead optimization of new antibiotics for M. tuberculosis.Entities:
Keywords: H37Rv; InhA inhibitors; antitubercular agents; diphenyl ether; molecular docking
Mesh:
Substances:
Year: 2020 PMID: 32650556 PMCID: PMC7397076 DOI: 10.3390/molecules25143125
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Commercially available anti-tubercular drugs.
Figure 2Structures of triclosan, diphenyl ether, and hydrazone derivatives.
Scheme 1Reagents and conditions: (i) Conc.H2SO4, MeOH, reflux, 8 h; (ii) NH2NH2.H2O, EtOH, reflux, 3 h.
Scheme 2Reagents and conditions: (i) Triethyl orthoformate reflux, 3 h; (ii) POCl3, reflux, 2–3 h; (iii) EtOH, reflux, 3–6 h.
The antitubercular activity of the diphenyl ether derivatives against H37Rv strain of M. tuberculosis (MIC (μg/mL) and their inhibition for InhA reductase enzyme (IC50 µM).
| Ar | No. | MIC (μg/mL) | IC50 (µM) | No. | MIC (μg/mL) | IC50 (µM) |
|---|---|---|---|---|---|---|
| ---------- |
| 0.86 | 3.43 |
| 0.61 | 3.28 |
|
|
| 2.74 | >100 |
| 34.54 | 73.23 |
|
|
| 34.64 | >100 |
| 50.20 | >100 |
|
|
| 39.04 | >100 |
| 20.68 | 75.46 |
|
|
| 15.15 | 68.44 |
| 7.67 | 19.75 |
|
|
| 15.89 | 64.55 |
| 2.89 | 7.46 |
|
|
| 8.23 | 41.24 |
| 22.62 | 29.89 |
|
|
| 12.23 | 33.82 |
| 0.98 | 4.23 |
|
|
| 1.40 | 5.08 |
| 6.96 | 26.54 |
|
|
| 1.40 | 11.72 |
| 6.82 | 21.39 |
|
|
| 11.12 | 51.42 |
| 6.35 | 18.37 |
|
|
| 3.65 | 78.65 |
| 1.69 | 5.61 |
|
|
| 1.17 | 5.63 |
| 0.20 | ND |
| ---------- | -------- | ---------- | ---------- |
| 10.00 | 1.10 |
Correlation between calculated physicochemical parameters and biological activity.
| Comp. No. | MIC (μg/mL) | Molecular Mass | Balaban Index | Molecular Topology: Wiener Index | Topological Diameter Bond (s) | Molar Refractivity, | Clog | Heat of Formation | Gibbs Energy | H Bond Donor | H Bond Acceptor | Lipinski’s Rule |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| 0.86 | 228.250 | 118,297 | 586 | 11 | 6.589 | 2.231 | −60.70 | 176.14 | 2 | 3 | Yes |
|
| 0.61 | 238.250 | 121,561 | 682 | 11 | 6.656 | 2.753 | 115.57 | 339.72 | 0 | 4 | Yes |
|
| 2.74 | 314.340 | 400,250 | 1561 | 15 | 9.167 | 4.806 | 216.79 | 493.02 | 0 | 4 | Yes |
|
| 34.64 | 404.422 | 110,779 | 2828 | 17 | 11.018 | 4.427 | −276.20 | 174.39 | 0 | 7 | Yes |
|
| 39.04 | 344.370 | 59,322 | 1990 | 17 | 9.784 | 4.679 | 52.46 | 386.81 | 0 | 5 | Yes |
|
| 15.15 | 359.340 | 71,066 | 2219 | 17 | 9.778 | ND | ND | ND | 0 | 5 | Yes |
|
| 15.89 | 348.770 | 488,162 | 1763 | 16 | 9.659 | 5.364 | 189.58 | 471.46 | 0 | 4 | No |
|
| 8.23 | 420.470 | 142,971 | 3769 | 21 | 12.295 | 6.412 | 165.15 | 549.74 | 0 | 5 | No |
|
| 12.23 | 364.404 | 706,482 | 2391 | 17 | 10.855 | 5.803 | 313.83 | 623.72 | 0 | 4 | No |
|
| 1.40 | 315.332 | 400,250 | 1561 | 15 | 8.956 | 3.468 | 270.22 | 561.65 | 0 | 5 | No |
|
| 1.40 | 315.332 | 400,250 | 1561 | 15 | 8.956 | 3.468 | 270.22 | 561.65 | 0 | 5 | Yes |
|
| 11.12 | 304.305 | 326,596 | 1380 | 14 | 8.381 | 3.421 | 74.450 | 372.20 | 0 | 5 | Yes |
|
| 3.65 | 320.062 | 32,659 | 1380 | 14 | 8.976 | 4.788 | 251.71 | 498.18 | 0 | 4 | Yes |
|
| 1.17 | 406.440 | 120,686 | 3377 | 20 | 11.831 | 6.343 | 185.97 | 541.32 | 0 | 5 | No |
|
| 34.54 | 384.390 | 104,520 | 2849 | 19 | 10.994 | 4.734 | 145.52 | ND | 1 | 6 | Yes |
|
| 50.20 | 474.470 | 250,732 | 4753 | 21 | 12.845 | 4.354 | −347.47 | ND | 1 | 9 | Yes |
|
| 20.68 | 414.420 | 145,706 | 3497 | 21 | 11.611 | 4.607 | −18.810 | ND | 1 | 7 | Yes |
|
| 7.67 | 414.420 | 145,706 | 3497 | 21 | 11.610 | ND | −18.81 | ND | 1 | 7 | Yes |
|
| 2.89 | 418.840 | 12,360 | 3158 | 20 | 11.485 | 5.292 | 118.31 | ND | 1 | 6 | Yes |
|
| 22.62 | 490.519 | 301,096 | 6023 | 25 | 14.122 | 6.339 | 93.88 | ND | 1 | 7 | No |
|
| 1.40 | 434.450 | 161,770 | 4015 | 20 | 12.682 | 5.730 | 242.56 | ND | 1 | 6 | No |
|
| 6.96 | 385.380 | 1,045,201 | 2849 | 19 | 10783 | 3.396 | 198.95 | ND | 1 | 7 | No |
|
| 6.82 | 385.383 | 1,045,201 | 2849 | 19 | 10.783 | 3.396 | 198.95 | ND | 1 | 7 | Yes |
|
| 6.35 | 374.356 | 880,346 | 2566 | 18 | 10.208 | 3.349 | 3.180 | ND | 1 | 7 | Yes |
|
| 1.69 | 390.417 | 88,034 | 2566 | 18 | 10.803 | 4.715 | 180.44 | ND | 1 | 6 | Yes |
|
| - | 0.308 | −0.179 | 0.315 | 0.260 | −0.100 | 0.152 | −0.683 | −0.602 | −0.370 | −0.360 | - |
MIC, IC50, and SI values determined for the selected most promising compounds.
| Compound |
| Vero Cell Line | SI (IC50/MIC) |
|---|---|---|---|
| MIC, µg/mL | IC50 µg/mL ± SEM | ||
|
| 0.86 | 80.7 ± 1.31 | 93.83 |
|
| 0.61 | 99.4 ± 1.79 | 162.95 |
|
| 1.40 | 91.4 ± 1.55 | 65.29 |
|
| 1.40 | 95.5 ± 1.36 | 68.21 |
|
| 1.17 | 92.6 ± 1.80 | 79.15 |
|
| 0.98 | 72.2 ± 1.87 | 73.67 |
|
| 1.69 | 68.6 ± 1.19 | 40.59 |
Figure 3Docking and binding mode of Triclosan into the active site of InhA reductase enzyme (PDB code: 3FNH). (A) 3D structure of triclosan (pink), (B) 2D structure of Triclosan (pink).
Figure 4Docking and binding mode of compound 3 into the active site of InhA reductase enzyme (PDB code: 3FNH). (A) 3D structure of compound 3 (green), (B) 2D structure of compound 3 (green).
Figure 5Docking and binding mode of compound 8g into the active site of InhA reductase enzyme (PDB code: 3FNH). (A) 3D structure of compound 8g (blue), (B) 2D structure of compound 8g (blue).
Figure 6Docking and binding mode of compound 8b into the active site of the InhA reductase enzyme (PDB code: 3FNH). (A) 3D structure of compound 8b (yellow), (B) 2D structure of compound 8b (yellow).