Literature DB >> 32640188

Illuminating RNA Biology: Tools for Imaging RNA in Live Mammalian Cells.

Esther Braselmann1, Colin Rathbun1, Erin M Richards1, Amy E Palmer2.   

Abstract

The central dogma teaches us that DNA makes RNA, which in turn makes proteins, the main building blocks of the cell. But this over simplified linear transmission of information overlooks the vast majority of the genome produces RNAs that do not encode proteins and the myriad ways that RNA regulates cellular functions. Historically, one of the challenges in illuminating RNA biology has been the lack of tools for visualizing RNA in live cells. But clever approaches for exploiting RNA binding proteins, in vitro RNA evolution, and chemical biology have resulted in significant advances in RNA visualization tools in recent years. This review provides an overview of current tools for tagging RNA with fluorescent probes and tracking their dynamics, localization andfunction in live mammalian cells.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RNA; chemical biology tools; genetically encoded tools; imaging; live-cell imaging; single-molecule tracking

Mesh:

Substances:

Year:  2020        PMID: 32640188      PMCID: PMC7595133          DOI: 10.1016/j.chembiol.2020.06.010

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN: 2451-9448            Impact factor:   8.116


  115 in total

1.  Dynamics of bidirectional transport of Arc mRNA in neuronal dendrites.

Authors:  Joseph L Dynes; Oswald Steward
Journal:  J Comp Neurol       Date:  2007-01-20       Impact factor: 3.215

2.  The Dynamics of mRNA Turnover Revealed by Single-Molecule Imaging in Single Cells.

Authors:  Ivana Horvathova; Franka Voigt; Anna V Kotrys; Yinxiu Zhan; Caroline G Artus-Revel; Jan Eglinger; Michael B Stadler; Luca Giorgetti; Jeffrey A Chao
Journal:  Mol Cell       Date:  2017-10-19       Impact factor: 17.970

3.  Isolation and characterization of fluorophore-binding RNA aptamers.

Authors:  L A Holeman; S L Robinson; J W Szostak; C Wilson
Journal:  Fold Des       Date:  1998

4.  Altering the context of an RNA bulge switches the binding specificities of two viral Tat proteins.

Authors:  C A Smith; S Crotty; Y Harada; A D Frankel
Journal:  Biochemistry       Date:  1998-07-28       Impact factor: 3.162

5.  Synonymous modification results in high-fidelity gene expression of repetitive protein and nucleotide sequences.

Authors:  Bin Wu; Veronika Miskolci; Hanae Sato; Evelina Tutucci; Charles A Kenworthy; Sara K Donnelly; Young J Yoon; Dianne Cox; Robert H Singer; Louis Hodgson
Journal:  Genes Dev       Date:  2015-04-15       Impact factor: 11.361

6.  Broccoli: rapid selection of an RNA mimic of green fluorescent protein by fluorescence-based selection and directed evolution.

Authors:  Grigory S Filonov; Jared D Moon; Nina Svensen; Samie R Jaffrey
Journal:  J Am Chem Soc       Date:  2014-11-05       Impact factor: 15.419

7.  Stem-loop RNA labeling can affect nuclear and cytoplasmic mRNA processing.

Authors:  Stephanie Heinrich; Corinne L Sidler; Claus M Azzalin; Karsten Weis
Journal:  RNA       Date:  2016-11-10       Impact factor: 4.942

8.  Multi-Color Single-Molecule Imaging Uncovers Extensive Heterogeneity in mRNA Decoding.

Authors:  Sanne Boersma; Deepak Khuperkar; Bram M P Verhagen; Stijn Sonneveld; Jonathan B Grimm; Luke D Lavis; Marvin E Tanenbaum
Journal:  Cell       Date:  2019-06-06       Impact factor: 41.582

9.  Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells.

Authors:  Alexis Autour; Sunny C Y Jeng; Adam D Cawte; Amir Abdolahzadeh; Angela Galli; Shanker S S Panchapakesan; David Rueda; Michael Ryckelynck; Peter J Unrau
Journal:  Nat Commun       Date:  2018-02-13       Impact factor: 14.919

10.  Single-molecule analysis of endogenous β-actin mRNA trafficking reveals a mechanism for compartmentalized mRNA localization in axons.

Authors:  Benita Turner-Bridger; Maximillian Jakobs; Leila Muresan; Hovy Ho-Wai Wong; Kristian Franze; William A Harris; Christine E Holt
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-25       Impact factor: 11.205

View more
  12 in total

1.  The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold.

Authors:  Lynda Truong; Hamed Kooshapur; Sourav Kumar Dey; Xing Li; Nico Tjandra; Samie R Jaffrey; Adrian R Ferré-D'Amaré
Journal:  Nat Chem Biol       Date:  2021-12-22       Impact factor: 15.040

2.  Enhancement of CRISPR/Cas12a trans-cleavage activity using hairpin DNA reporters.

Authors:  Marianna Rossetti; Rosa Merlo; Neda Bagheri; Danila Moscone; Anna Valenti; Aakash Saha; Pablo R Arantes; Rudy Ippodrino; Francesco Ricci; Ida Treglia; Elisabetta Delibato; John van der Oost; Giulia Palermo; Giuseppe Perugino; Alessandro Porchetta
Journal:  Nucleic Acids Res       Date:  2022-08-12       Impact factor: 19.160

3.  Long-term imaging of individual mRNA molecules in living cells.

Authors:  Yue Guo; Robin E C Lee
Journal:  Cell Rep Methods       Date:  2022-05-25

Review 4.  Reimagining dots and dashes: Visualizing structure and function of organelles for high-content imaging analysis.

Authors:  Marcus Y Chin; Jether Amos Espinosa; Grace Pohan; Sarine Markossian; Michelle R Arkin
Journal:  Cell Chem Biol       Date:  2021-02-17       Impact factor: 8.116

Review 5.  Intracellular mRNA transport and localized translation.

Authors:  Sulagna Das; Maria Vera; Valentina Gandin; Robert H Singer; Evelina Tutucci
Journal:  Nat Rev Mol Cell Biol       Date:  2021-04-09       Impact factor: 113.915

6.  An Expeditious Approach towards the Synthesis and Application of Water-Soluble and Photostable Fluorogenic Chromones for DNA Detection.

Authors:  Steve Vincent; Suman Mallick; Guillaume Barnoin; Hoang-Ngoan Le; Benoît Y Michel; Alain Burger
Journal:  Molecules       Date:  2022-03-31       Impact factor: 4.411

Review 7.  The emerging structural complexity of G-quadruplex RNAs.

Authors:  Michael T Banco; Adrian R Ferré-D'Amaré
Journal:  RNA       Date:  2021-01-22       Impact factor: 4.942

Review 8.  Seeing Is Believing: Visualizing Circular RNAs.

Authors:  Pruthvi Raj Bejugam; Aniruddha Das; Amaresh Chandra Panda
Journal:  Noncoding RNA       Date:  2020-11-11

Review 9.  Transient Fluorescence Labeling: Low Affinity-High Benefits.

Authors:  Maxim M Perfilov; Alexey S Gavrikov; Konstantin A Lukyanov; Alexander S Mishin
Journal:  Int J Mol Sci       Date:  2021-10-30       Impact factor: 5.923

Review 10.  Spatiotemporal Insights Into RNA-Organelle Interactions in Neurons.

Authors:  Shivani C Kharod; Dong-Woo Hwang; Sulagna Das; Young J Yoon
Journal:  Front Cell Dev Biol       Date:  2021-06-10
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.