Literature DB >> 32636258

Characterizing soundscapes across diverse ecosystems using a universal acoustic feature set.

Sarab S Sethi1,2,3, Nick S Jones4, Ben D Fulcher5, Lorenzo Picinali2, Dena Jane Clink6, Holger Klinck6, C David L Orme3, Peter H Wrege6, Robert M Ewers3.   

Abstract

Natural habitats are being impacted by human pressures at an alarming rate. Monitoring these ecosystem-level changes often requires labor-intensive surveys that are unable to detect rapid or unanticipated environmental changes. Here we have developed a generalizable, data-driven solution to this challenge using eco-acoustic data. We exploited a convolutional neural network to embed soundscapes from a variety of ecosystems into a common acoustic space. In both supervised and unsupervised modes, this allowed us to accurately quantify variation in habitat quality across space and in biodiversity through time. On the scale of seconds, we learned a typical soundscape model that allowed automatic identification of anomalous sounds in playback experiments, providing a potential route for real-time automated detection of irregular environmental behavior including illegal logging and hunting. Our highly generalizable approach, and the common set of features, will enable scientists to unlock previously hidden insights from acoustic data and offers promise as a backbone technology for global collaborative autonomous ecosystem monitoring efforts.

Entities:  

Keywords:  acoustic; ecology; machine learning; monitoring; soundscape

Mesh:

Year:  2020        PMID: 32636258      PMCID: PMC7382238          DOI: 10.1073/pnas.2004702117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  12 in total

Review 1.  Global biodiversity scenarios for the year 2100.

Authors:  O E Sala; F S Chapin; J J Armesto; E Berlow; J Bloomfield; R Dirzo; E Huber-Sanwald; L F Huenneke; R B Jackson; A Kinzig; R Leemans; D M Lodge; H A Mooney; M Oesterheld; N L Poff; M T Sykes; B H Walker; M Walker; D H Wall
Journal:  Science       Date:  2000-03-10       Impact factor: 47.728

Review 2.  Ecological responses to recent climate change.

Authors:  Gian-Reto Walther; Eric Post; Peter Convey; Annette Menzel; Camille Parmesan; Trevor J C Beebee; Jean-Marc Fromentin; Ove Hoegh-Guldberg; Franz Bairlein
Journal:  Nature       Date:  2002-03-28       Impact factor: 49.962

Review 3.  A large-scale forest fragmentation experiment: the Stability of Altered Forest Ecosystems Project.

Authors:  Robert M Ewers; Raphael K Didham; Lenore Fahrig; Gonçalo Ferraz; Andy Hector; Robert D Holt; Valerie Kapos; Glen Reynolds; Waidi Sinun; Jake L Snaddon; Edgar C Turner
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-11-27       Impact factor: 6.237

4.  Seasonal matching of habitat quality and fitness in a migratory bird.

Authors:  Tómas Grétar Gunnarsson; Jennifer A Gill; Jason Newton; Peter M Potts; William J Sutherland
Journal:  Proc Biol Sci       Date:  2005-11-07       Impact factor: 5.349

5.  Clustering by passing messages between data points.

Authors:  Brendan J Frey; Delbert Dueck
Journal:  Science       Date:  2007-01-11       Impact factor: 47.728

Review 6.  Measuring and monitoring illegal use of natural resources.

Authors:  Michael C Gavin; Jennifer N Solomon; Sara G Blank
Journal:  Conserv Biol       Date:  2009-12-09       Impact factor: 6.560

7.  Assessing ecosystem health.

Authors:  D J Rapport; R Costanza; A J McMichael
Journal:  Trends Ecol Evol       Date:  1998-10-01       Impact factor: 17.712

8.  Accuracy of acoustic respiration rate monitoring in pediatric patients.

Authors:  Mario Patino; Daniel T Redford; Thomas W Quigley; Mohamed Mahmoud; C Dean Kurth; Peter Szmuk
Journal:  Paediatr Anaesth       Date:  2013-09-03       Impact factor: 2.556

9.  Real-time bioacoustics monitoring and automated species identification.

Authors:  T Mitchell Aide; Carlos Corrada-Bravo; Marconi Campos-Cerqueira; Carlos Milan; Giovany Vega; Rafael Alvarez
Journal:  PeerJ       Date:  2013-07-16       Impact factor: 2.984

10.  Rapid acoustic survey for biodiversity appraisal.

Authors:  Jérôme Sueur; Sandrine Pavoine; Olivier Hamerlynck; Stéphanie Duvail
Journal:  PLoS One       Date:  2008-12-30       Impact factor: 3.240

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  7 in total

1.  BioSounds: an open-source, online platform for ecoacoustics.

Authors:  Kevin Darras; Noemí Pérez; Tara Hanf-Dressler
Journal:  F1000Res       Date:  2020-10-12

2.  Not by the light of the moon: Investigating circadian rhythms and environmental predictors of calling in Bornean great argus.

Authors:  Dena J Clink; Tom Groves; Abdul Hamid Ahmad; Holger Klinck
Journal:  PLoS One       Date:  2021-02-16       Impact factor: 3.240

3.  Soundscape dynamics of a cold protected forest: dominance of aircraft noise.

Authors:  Elie Grinfeder; Sylvain Haupert; Manon Ducrettet; Julien Barlet; Marie-Pierre Reynet; Frédéric Sèbe; Jérôme Sueur
Journal:  Landsc Ecol       Date:  2022-01-08       Impact factor: 5.043

4.  Computational bioacoustics with deep learning: a review and roadmap.

Authors:  Dan Stowell
Journal:  PeerJ       Date:  2022-03-21       Impact factor: 2.984

5.  Animal soundscapes reveal key markers of Amazon forest degradation from fire and logging.

Authors:  Danielle I Rappaport; Anshuman Swain; William F Fagan; Ralph Dubayah; Douglas C Morton
Journal:  Proc Natl Acad Sci U S A       Date:  2022-04-26       Impact factor: 12.779

6.  Pond Acoustic Sampling Scheme: A draft protocol for rapid acoustic data collection in small waterbodies.

Authors:  Carlos Abrahams; Camille Desjonquères; Jack Greenhalgh
Journal:  Ecol Evol       Date:  2021-05-01       Impact factor: 2.912

7.  Expanding conservation culturomics and iEcology from terrestrial to aquatic realms.

Authors:  Ivan Jarić; Uri Roll; Robert Arlinghaus; Jonathan Belmaker; Yan Chen; Victor China; Karel Douda; Franz Essl; Sonja C Jähnig; Jonathan M Jeschke; Gregor Kalinkat; Lukáš Kalous; Richard Ladle; Robert J Lennox; Rui Rosa; Valerio Sbragaglia; Kate Sherren; Marek Šmejkal; Andrea Soriano-Redondo; Allan T Souza; Christian Wolter; Ricardo A Correia
Journal:  PLoS Biol       Date:  2020-10-29       Impact factor: 8.029

  7 in total

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