Literature DB >> 32632294

Architecture and functional dynamics of the pentafunctional AROM complex.

Harshul Arora Verasztó1,2, Maria Logotheti1, Reinhard Albrecht1, Alexander Leitner3, Hongbo Zhu1, Marcus D Hartmann4.   

Abstract

The AROM complex is a multifunctional metabolic machine with ten enzymatic domains catalyzing the five central steps of the shikimate pathway in fungi and protists. We determined its crystal structure and catalytic behavior, and elucidated its conformational space using a combination of experimental and computational approaches. We derived this space in an elementary approach, exploiting an abundance of conformational information from its monofunctional homologs in the Protein Data Bank. It demonstrates how AROM is optimized for spatial compactness while allowing for unrestricted conformational transitions and a decoupled functioning of its individual enzymatic entities. With this architecture, AROM poses a tractable test case for the effects of active site proximity on the efficiency of both natural metabolic systems and biotechnological pathway optimization approaches. We show that a mere colocalization of enzymes is not sufficient to yield a detectable improvement of metabolic throughput.

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Year:  2020        PMID: 32632294     DOI: 10.1038/s41589-020-0587-9

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  46 in total

Review 1.  The shikimate pathway--a metabolic tree with many branches.

Authors:  R Bentley
Journal:  Crit Rev Biochem Mol Biol       Date:  1990       Impact factor: 8.250

2.  Evolutionary origins of the eukaryotic shikimate pathway: gene fusions, horizontal gene transfer, and endosymbiotic replacements.

Authors:  Thomas A Richards; Joel B Dacks; Samantha A Campbell; Jeffrey L Blanchard; Peter G Foster; Rima McLeod; Craig W Roberts
Journal:  Eukaryot Cell       Date:  2006-09

3.  Mechanism of phosphoryl transfer catalyzed by shikimate kinase from Mycobacterium tuberculosis.

Authors:  Marcus D Hartmann; Gleb P Bourenkov; Attila Oberschall; Nicolai Strizhov; Hans D Bartunik
Journal:  J Mol Biol       Date:  2006-09-05       Impact factor: 5.469

4.  Structure of dehydroquinate synthase reveals an active site capable of multistep catalysis.

Authors:  E P Carpenter; A R Hawkins; J W Frost; K A Brown
Journal:  Nature       Date:  1998-07-16       Impact factor: 49.962

5.  The two types of 3-dehydroquinase have distinct structures but catalyze the same overall reaction.

Authors:  D G Gourley; A K Shrive; I Polikarpov; T Krell; J R Coggins; A R Hawkins; N W Isaacs; L Sawyer
Journal:  Nat Struct Biol       Date:  1999-06

Review 6.  The shikimate pathway and its branches in apicomplexan parasites.

Authors:  Craig W Roberts; Fiona Roberts; Russell E Lyons; Michael J Kirisits; Ernest J Mui; John Finnerty; Jennifer J Johnson; David J P Ferguson; John R Coggins; Tino Krell; Graham H Coombs; Wilbur K Milhous; Dennis E Kyle; Saul Tzipori; John Barnwell; John B Dame; Jane Carlton; Rima McLeod
Journal:  J Infect Dis       Date:  2002-02-15       Impact factor: 5.226

7.  Interaction of the herbicide glyphosate with its target enzyme 5-enolpyruvylshikimate 3-phosphate synthase in atomic detail.

Authors:  E Schönbrunn; S Eschenburg; W A Shuttleworth; J V Schloss; N Amrhein; J N Evans; W Kabsch
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

Review 8.  Glyphosate: a once-in-a-century herbicide.

Authors:  Stephen O Duke; Stephen B Powles
Journal:  Pest Manag Sci       Date:  2008-04       Impact factor: 4.845

9.  Structures of shikimate dehydrogenase AroE and its Paralog YdiB. A common structural framework for different activities.

Authors:  Gurvan Michel; Aleksander W Roszak; Véronique Sauvé; John Maclean; Allan Matte; John R Coggins; Miroslaw Cygler; Adrian J Lapthorn
Journal:  J Biol Chem       Date:  2003-03-12       Impact factor: 5.157

10.  Organization of enzymes in the common aromatic synthetic pathway: evidence for aggregation in fungi.

Authors:  S I Ahmed; N H Giles
Journal:  J Bacteriol       Date:  1969-07       Impact factor: 3.490

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  3 in total

Review 1.  Metabolic channeling: predictions, deductions, and evidence.

Authors:  Vidhi Pareek; Zhou Sha; Jingxuan He; Ned S Wingreen; Stephen J Benkovic
Journal:  Mol Cell       Date:  2021-09-16       Impact factor: 19.328

2.  Molecular analysis and essentiality of Aro1 shikimate biosynthesis multi-enzyme in Candida albicans.

Authors:  Peter J Stogios; Sean D Liston; Cameron Semper; Bradley Quade; Karolina Michalska; Elena Evdokimova; Shane Ram; Zbyszek Otwinowski; Dominika Borek; Leah E Cowen; Alexei Savchenko
Journal:  Life Sci Alliance       Date:  2022-05-05

3.  Hybrid Chemoenzymatic Synthesis of C7 -Sugars for Molecular Evidence of in vivo Shikimate Pathway Inhibition.

Authors:  Pascal Rath; Johanna Rapp; Klaus Brilisauer; Marvin Braun; Üner Kolukisaoglu; Karl Forchhammer; Stephanie Grond
Journal:  Chembiochem       Date:  2022-05-23       Impact factor: 3.461

  3 in total

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