Literature DB >> 32607406

Automating image-based mesh generation and manipulation tasks in cardiac modeling workflows using Meshtool.

Aurel Neic1,2, Matthias A F Gsell1, Elias Karabelas1,3, Anton J Prassl1, Gernot Plank1.   

Abstract

Advanced cardiac modeling studies rely on the ability to generate and functionalize personalized in silico models from tomographic multi-label image stacks. Eventually, this is used for building virtual cohorts that capture the variability in size, shape, and morphology of individual hearts. Typical modeling workflows involve a multitude of interactive mesh manipulation steps, rendering model generation expensive. Meshtool is software specifically designed for automating all complex mesh manipulation tasks emerging in such workflows by implementing algorithms for tasks describable as operations on label fields and/or geometric features. We illustrate how Meshtool increases efficiency and reduces costs by offering an automatable, high performance mesh manipulation toolbox.

Entities:  

Keywords:  Geometric smoothing; Mesh generation; Mesh manipulation

Year:  2020        PMID: 32607406      PMCID: PMC7326605          DOI: 10.1016/j.softx.2020.100454

Source DB:  PubMed          Journal:  SoftwareX


  9 in total

1.  Automatically generated, anatomically accurate meshes for cardiac electrophysiology problems.

Authors:  Anton J Prassl; Ferdinand Kickinger; Helmut Ahammer; Vicente Grau; Jürgen E Schneider; Ernst Hofer; Edward J Vigmond; Natalia A Trayanova; Gernot Plank
Journal:  IEEE Trans Biomed Eng       Date:  2009-02-06       Impact factor: 4.538

2.  Towards a Computational Framework for Modeling the Impact of Aortic Coarctations Upon Left Ventricular Load.

Authors:  Elias Karabelas; Matthias A F Gsell; Christoph M Augustin; Laura Marx; Aurel Neic; Anton J Prassl; Leonid Goubergrits; Titus Kuehne; Gernot Plank
Journal:  Front Physiol       Date:  2018-05-28       Impact factor: 4.566

3.  Image-Based Personalization of Cardiac Anatomy for Coupled Electromechanical Modeling.

Authors:  A Crozier; C M Augustin; A Neic; A J Prassl; M Holler; T E Fastl; A Hennemuth; K Bredies; T Kuehne; M J Bishop; S A Niederer; G Plank
Journal:  Ann Biomed Eng       Date:  2015-09-30       Impact factor: 3.934

4.  Arrhythmia risk stratification of patients after myocardial infarction using personalized heart models.

Authors:  Hermenegild J Arevalo; Fijoy Vadakkumpadan; Eliseo Guallar; Alexander Jebb; Peter Malamas; Katherine C Wu; Natalia A Trayanova
Journal:  Nat Commun       Date:  2016-05-10       Impact factor: 14.919

5.  Efficient computation of electrograms and ECGs in human whole heart simulations using a reaction-eikonal model.

Authors:  Aurel Neic; Fernando O Campos; Anton J Prassl; Steven A Niederer; Martin J Bishop; Edward J Vigmond; Gernot Plank
Journal:  J Comput Phys       Date:  2017-10-01       Impact factor: 3.553

6.  Patient-specific modeling of left ventricular electromechanics as a driver for haemodynamic analysis.

Authors:  Christoph M Augustin; Andrew Crozier; Aurel Neic; Anton J Prassl; Elias Karabelas; Tiago Ferreira da Silva; Joao F Fernandes; Fernando Campos; Titus Kuehne; Gernot Plank
Journal:  Europace       Date:  2016-12       Impact factor: 5.214

7.  Personalized virtual-heart technology for guiding the ablation of infarct-related ventricular tachycardia.

Authors:  Adityo Prakosa; Hermenegild J Arevalo; Dongdong Deng; Patrick M Boyle; Plamen P Nikolov; Hiroshi Ashikaga; Joshua J E Blauer; Elyar Ghafoori; Carolyn J Park; Robert C Blake; Frederick T Han; Rob S MacLeod; Henry R Halperin; David J Callans; Ravi Ranjan; Jonathan Chrispin; Saman Nazarian; Natalia A Trayanova
Journal:  Nat Biomed Eng       Date:  2018-09-03       Impact factor: 25.671

8.  Assessment of wall stresses and mechanical heart power in the left ventricle: Finite element modeling versus Laplace analysis.

Authors:  Matthias A F Gsell; Christoph M Augustin; Anton J Prassl; Elias Karabelas; Joao F Fernandes; Marcus Kelm; Leonid Goubergrits; Titus Kuehne; Gernot Plank
Journal:  Int J Numer Method Biomed Eng       Date:  2018-09-30       Impact factor: 2.747

9.  Generation of a cohort of whole-torso cardiac models for assessing the utility of a novel computed shock vector efficiency metric for ICD optimisation.

Authors:  Anne-Marie Plancke; Adam Connolly; Philip M Gemmell; Aurel Neic; Luke C McSpadden; John Whitaker; Mark O'Neill; Christopher A Rinaldi; Ronak Rajani; Steven A Niederer; Gernot Plank; Martin J Bishop
Journal:  Comput Biol Med       Date:  2019-07-24       Impact factor: 4.589

  9 in total
  13 in total

1.  Optimisation of Left Atrial Feature Tracking Using Retrospective Gated Computed Tomography Images.

Authors:  Charles Sillett; Orod Razeghi; Marina Strocchi; Caroline H Roney; Hugh O'Brien; Daniel B Ennis; Ulrike Haberland; Ronak Rajani; Christopher A Rinaldi; Steven A Niederer
Journal:  Funct Imaging Model Heart       Date:  2021-06-18

2.  Global Sensitivity Analysis of Four Chamber Heart Hemodynamics Using Surrogate Models.

Authors:  Elias Karabelas; Stefano Longobardi; Jana Fuchsberger; Orod Razeghi; Cristobal Rodero; Marina Strocchi; Ronak Rajani; Gundolf Haase; Gernot Plank; Steven Niederer
Journal:  IEEE Trans Biomed Eng       Date:  2022-09-19       Impact factor: 4.756

3.  The Role of Myocardial Fiber Direction in Epicardial Activation Patterns via Uncertainty Quantification.

Authors:  Lindsay C Rupp; Jake A Bergquist; Brian Zenger; Karli Gillette; Akil Narayan; Jess D Tate; Gernot Plank; Rob S MacLeod
Journal:  Comput Cardiol (2010)       Date:  2021-09

4.  Quantifying the Spatiotemporal Influence of Acute Myocardial Ischemia on Volumetric Conduction Speeds.

Authors:  Wilson W Good; Brian Zenger; Jake A Bergquist; Lindsay C Rupp; Karli Gillette; Gernot Plank; Rob S MacLeod
Journal:  Comput Cardiol (2010)       Date:  2021-02-10

5.  Effect of Myocardial Fiber Direction on Epicardial Activation Patterns.

Authors:  Lindsay C Rupp; Wilson W Good; Jake A Bergquist; Brian Zenger; Karli Gillette; Gernot Plank; Rob S MacLeod
Journal:  Comput Cardiol (2010)       Date:  2021-02-10

6.  Estimation and Validation of Cardiac Conduction Velocity and Wavefront Reconstruction Using Epicardial and Volumetric Data.

Authors:  Wilson W Good; Karli K Gillette; Brian Zenger; Jake A Bergquist; Lindsay C Rupp; Jess Tate; Devan Anderson; Matthias A F Gsell; Gernot Plank; Rob S MacLeod
Journal:  IEEE Trans Biomed Eng       Date:  2021-10-19       Impact factor: 4.756

7.  A computationally efficient physiologically comprehensive 3D-0D closed-loop model of the heart and circulation.

Authors:  Christoph M Augustin; Matthias A F Gsell; Elias Karabelas; Erik Willemen; Frits W Prinzen; Joost Lumens; Edward J Vigmond; Gernot Plank
Journal:  Comput Methods Appl Mech Eng       Date:  2021-08-18       Impact factor: 6.756

8.  Automated Framework for the Inclusion of a His-Purkinje System in Cardiac Digital Twins of Ventricular Electrophysiology.

Authors:  Karli Gillette; Matthias A F Gsell; Julien Bouyssier; Anton J Prassl; Aurel Neic; Edward J Vigmond; Gernot Plank
Journal:  Ann Biomed Eng       Date:  2021-08-24       Impact factor: 3.934

9.  An in-silico assessment of efficacy of two novel intra-cardiac electrode configurations versus traditional anti-tachycardia pacing therapy for terminating sustained ventricular tachycardia.

Authors:  Shuang Qian; Adam Connolly; Caroline Mendonca-Costa; Fernando Campos; Steven E Williams; John Whitaker; Christopher A Rinaldi; Martin J Bishop
Journal:  Comput Biol Med       Date:  2021-10-30       Impact factor: 4.589

10.  Determining anatomical and electrophysiological detail requirements for computational ventricular models of porcine myocardial infarction.

Authors:  Caroline Mendonca Costa; Philip Gemmell; Mark K Elliott; John Whitaker; Fernando O Campos; Marina Strocchi; Aurel Neic; Karli Gillette; Edward Vigmond; Gernot Plank; Reza Razavi; Mark O'Neill; Christopher A Rinaldi; Martin J Bishop
Journal:  Comput Biol Med       Date:  2021-11-26       Impact factor: 4.589

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