| Literature DB >> 32600376 |
Ahmed Rguig1, Imad Cherkaoui2, Margaret McCarron3, Hicham Oumzil4, Soumia Triki5, Houria Elmbarki1, Abderrahman Bimouhen4, Fatima El Falaki4, Zakia Regragui4, Hassan Ihazmad4, Chakib Nejjari6, Mohammed Youbi1.
Abstract
BACKGROUND: Several statistical methods of variable complexity have been developed to establish thresholds for influenza activity that may be used to inform public health guidance. We compared the results of two methods and explored how they worked to characterize the 2018 influenza season performance-2018 season.Entities:
Keywords: Alert threshold; Average epidemic curve; Influenza seasonality; Seasonal threshold
Mesh:
Year: 2020 PMID: 32600376 PMCID: PMC7323370 DOI: 10.1186/s12889-020-09145-y
Source DB: PubMed Journal: BMC Public Health ISSN: 1471-2458 Impact factor: 3.295
Summary of WHO method and MEM concepts
| Concepts | WHO method (5, 20) | MEM (20, 26) |
|---|---|---|
| Find 3-week moving average of ILI%. Find median peak week for each season. Align the multiple seasons on median peak week. Calculate the average ILI% for each week. | MEM software produces an average curve, lower interval, and higher interval. | |
| Calculate the mean and standard deviation (SD) of the average epidemic curve. For each week, the alert threshold is 1.645 SD above the weekly ILI% mean. ILI% > 1.645 SD indicates high ILI activity or outbreaks and may be used to characterize a severe season. | ||
| A graph consisting of the alert thresholds for each epidemic week. | ||
| Median weekly ILI% over all weeks (i.e., the average epidemic curve is not used). | For prospective surveillance: upper limit of the 95% one-sided confidence interval of the arithmetic mean of the 30 highest pre-epidemic weekly ILI% values. | |
| For prospective surveillance: upper limit of the 95% one-sided confidence interval of the arithmetic mean of the 30 highest post-epidemic weekly ILI% values. | ||
| The third of three consecutive weeks with ILI% above seasonal threshold. | For retrospective analysis of individual season data: see “length of epidemic period”. | |
| The third of three consecutive weeks with ILI% below seasonal threshold | For retrospective analysis of individual season data: see “length of epidemic period”. | |
| Weeks from epidemic start to end. | For retrospective analysis of individual season data: MEM software uses a “maximum accumulated proportions percentage (MAP)” algorithm to split the season into three periods: a pre-epidemic, an epidemic, and a post-epidemic period. | |
| Proportion of total cases that occurred during the epidemic period | ||
| Upper 40% limit of 1-sided CI of mean of all peak values. | Upper 40% limit of the one-sided confidence interval of the geometric mean of the 30 highest epidemic weekly ILI% values. | |
| Upper 90% limit of 1-sided CI of mean of all peak values. | Upper 90% limit of the one-sided confidence interval of the geometric mean of the 30 highest epidemic weekly ILI% values. | |
| Upper 97.5% limit of 1-sided CI of mean of all peak values. | Upper 95% limit of the one-sided confidence interval of the geometric mean of the 30 highest epidemic weekly ILI% values. | |
Fig. 1Illustration of the WHO method: plot of the average epedemic curve, seasonal and intensity thresholds based on the weekly proportion of influenza-like illness (ILI) visits all among of outpatient consultations from 2005/2006 to 2016/2017 seasons and observed 2017/2018 season, Morocco
Model estimators using WHO and Moving Epidemics Method (MEM), 2005/2006 to 2016/2017 seasons, Morocco (*)
| Estimators used | Analysis method | ||
|---|---|---|---|
| WHO | MEM | MEM | |
| Type of data used | Weekly proportion of ILI patients among all outpatients | Weekly proportion of ILI patients among all outpatients | Estimated weekly proportion of confirmed ILI patientsa among all outpatients |
| Number of seasons analyzed | 11 | 11 | 3 |
| Average epidemic start week | 46b | 49 | 50 |
Average peak week of the seasons 43 to 46 | 3 | 3 | 3 |
| Average epidemic length (in weeks) | 24 | 14 | 15 |
| Epidemic percentagec | 38.06% | 45.62% | 95.41% |
| Seasonal (WHO) or pre-epidemic threshold (MEM) | 0.90% | 1.51% | 0.03% |
| Moderate/medium thresholdd | 2.13% | 2.12% | 0.59% |
| High threshold | 2.77% | 2.81% | 1.5% |
| Very high threshold (extraordinary) | 3.06% | 3.19% | 2.05% |
(*) 2009/2010 pandemic year excluded
aComposite parameter defined as the product of the ILI proportion and the percentage positive
bGiven the three-consecutive-week-declaration rule considered for the WHO method
cPercentage of the cumulative sum of values in the epidemic period of the seasons in the model
dModerate threshold is used for WHO method and medium threshold for MEM
Fig. 2Illustration of the Moving Epidemic Method (MEM): plot of the average epedemic curve, epidemic and intensity thresholds based on the weekly proportion of influenza-like illness (ILI) visits all among of outpatient consultations from 2005/2006 to 2016/2017 seasons and observed 2017/2018 season, Morocco
Fig. 3Illustration of the Moving Epidemic Method (MEM): plot of the average epedemic curve, epidemic and intensity thresholds based on composite parameter 1 from 2005/2006 to 2016/2017 seasons and observed 2017/2018 season, Morocco
Indicators of the model performance to detect the beginning of an epidemic period (goodness of the Moving Epidemic Method) (MEM) for detecting the epidemics Morocco
| Used method | MEM | MEM |
|---|---|---|
| Historical data | 2005/2006 to 2016/2017 | 2014/2015 to 2016/2017 |
| Type of data used | Influenza Like Illnessproportion (%ILI) | Compositea |
| Sensitivity | 0.81 | 0.76 |
| Specificity | 0.92 | 0.95 |
| Positive predictive value | 0.71 | 0.80 |
| Negative predictive value | 0.95 | 0.93 |
| Percent agreement | 0.90 | 0.91 |
| Matthews correlation coefficient | 0.70 | 0.72 |
aILI% multiplied by percent of ILI with laboratory-confirmed influenza