Literature DB >> 32597189

On Calculating the Bending Modulus of Lipid Bilayer Membranes from Buckling Simulations.

Jad Eid1,2, Hafez Razmazma1,3, Alia Jraij2, Ali Ebrahimi3, Luca Monticelli1.   

Abstract

The bending modulus is an important physical constant characterizing lipid membranes. Different methods have been devised for calculating the bending modulus from simulations, and one of them, named the buckling method, is nowadays widely used due to its simplicity and numerical stability. However, questions remain on the reproducibility, finite size effects, and interpretation of results on lipid mixtures. Here we explore the dependence of simulation results on the system size and the strain. We find that the dimensions of the box have a negligible impact on the results when the system size is beyond a certain threshold. We then calculate the bending rigidity for of a series of common single-component lipid bilayers (PC, PS, PE, PG, and SM), as well as a number of binary and ternary lipid mixtures. We find that bending moduli of lipid mixtures can be predicted from the weighted average of the moduli of the individual components, as long as the mixture is homogeneous. For phase-separated mixtures, the apparent elastic modulus is closer to the value of the softer component. Predictions of the bending modulus based on the area compressibility modulus are found to be generally unreliable.

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Year:  2020        PMID: 32597189     DOI: 10.1021/acs.jpcb.0c04253

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  10 in total

1.  Taking the Monte-Carlo gamble: How not to buckle under the pressure!

Authors:  Yessica K Gomez; Andrew M Natale; James Lincoff; Charles W Wolgemuth; John M Rosenberg; Michael Grabe
Journal:  J Comput Chem       Date:  2021-12-18       Impact factor: 3.376

2.  Coacervation of poly-electrolytes in the presence of lipid bilayers: mutual alteration of structure and morphology.

Authors:  Sayantan Mondal; Qiang Cui
Journal:  Chem Sci       Date:  2022-06-16       Impact factor: 9.969

3.  Data-driven discovery of cardiolipin-selective small molecules by computational active learning.

Authors:  Bernadette Mohr; Kirill Shmilovich; Isabel S Kleinwächter; Dirk Schneider; Andrew L Ferguson; Tristan Bereau
Journal:  Chem Sci       Date:  2022-03-02       Impact factor: 9.969

Review 4.  Value of models for membrane budding.

Authors:  Christopher T Lee; Matthew Akamatsu; Padmini Rangamani
Journal:  Curr Opin Cell Biol       Date:  2021-03-08       Impact factor: 8.386

5.  Effects of cholesterol on the size distribution and bending modulus of lipid vesicles.

Authors:  Mohammad Abu Sayem Karal; Nadia Akter Mokta; Victor Levadny; Marina Belaya; Marzuk Ahmed; Md Kabir Ahamed; Shareef Ahammed
Journal:  PLoS One       Date:  2022-01-28       Impact factor: 3.240

6.  Quantification of pulsed electric field for the rupture of giant vesicles with various surface charges, cholesterols and osmotic pressures.

Authors:  Md Kabir Ahamed; Marzuk Ahmed; Mohammad Abu Sayem Karal
Journal:  PLoS One       Date:  2022-01-13       Impact factor: 3.240

7.  Membrane Phase Drives the Assembly of Gold Nanoparticles on Biomimetic Lipid Bilayers.

Authors:  Jacopo Cardellini; Lucrezia Caselli; Enrico Lavagna; Sebastian Salassi; Heinz Amenitsch; Martino Calamai; Costanza Montis; Giulia Rossi; Debora Berti
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-03-01       Impact factor: 4.126

8.  The bending rigidity of the red blood cell cytoplasmic membrane.

Authors:  Sebastian Himbert; Angelo D'Alessandro; Syed M Qadri; Michael J Majcher; Todd Hoare; William P Sheffield; Michihiro Nagao; John F Nagle; Maikel C Rheinstädter
Journal:  PLoS One       Date:  2022-08-01       Impact factor: 3.752

Review 9.  Amphiphilic Gold Nanoparticles: A Biomimetic Tool to Gain Mechanistic Insights into Peptide-Lipid Interactions.

Authors:  Ester Canepa; Annalisa Relini; Davide Bochicchio; Enrico Lavagna; Andrea Mescola
Journal:  Membranes (Basel)       Date:  2022-06-29

10.  Mechanical properties of anionic asymmetric bilayers from atomistic simulations.

Authors:  Wenjuan Jiang; Yi-Chun Lin; Yun Lyna Luo
Journal:  J Chem Phys       Date:  2021-06-14       Impact factor: 4.304

  10 in total

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