Literature DB >> 33706232

Value of models for membrane budding.

Christopher T Lee1, Matthew Akamatsu2, Padmini Rangamani3.   

Abstract

The budding of membranes and curvature generation is common to many forms of trafficking in cells. Clathrin-mediated endocytosis, as a prototypical example of trafficking, has been studied in great detail using a variety of experimental systems and methods. Recently, advances in experimental methods have led to great strides in insights on the molecular mechanisms and the spatiotemporal dynamics of the protein machinery associated with membrane curvature generation. These advances have been ably supported by computational models, which have given us insights into the underlying mechanical principles of clathrin-mediated endocytosis. On the other hand, targeted experimental perturbation of membranes has lagged behind that of proteins in cells. In this area, modeling is especially critical to interpret experimental measurements in a mechanistic context. Here, we discuss the contributions made by these models to our understanding of endocytosis and identify opportunities to strengthen the connections between models and experiments.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Bending modulus; Budding; Clathrin-mediated endocytosis; Helfrich; Membrane tension; Multiscale modeling; Snapthrough instability

Mesh:

Substances:

Year:  2021        PMID: 33706232      PMCID: PMC8328869          DOI: 10.1016/j.ceb.2021.01.011

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.386


  76 in total

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Authors:  T Baumgart; S Das; W W Webb; J T Jenkins
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

2.  ENDOCYTOSIS. Endocytic sites mature by continuous bending and remodeling of the clathrin coat.

Authors:  Ori Avinoam; Martin Schorb; Carsten J Beese; John A G Briggs; Marko Kaksonen
Journal:  Science       Date:  2015-06-19       Impact factor: 47.728

3.  Membrane bending by protein-protein crowding.

Authors:  Jeanne C Stachowiak; Eva M Schmid; Christopher J Ryan; Hyoung Sook Ann; Darryl Y Sasaki; Michael B Sherman; Phillip L Geissler; Daniel A Fletcher; Carl C Hayden
Journal:  Nat Cell Biol       Date:  2012-08-19       Impact factor: 28.824

4.  The minimum energy of bending as a possible explanation of the biconcave shape of the human red blood cell.

Authors:  P B Canham
Journal:  J Theor Biol       Date:  1970-01       Impact factor: 2.691

5.  Determining the Gaussian curvature modulus of lipid membranes in simulations.

Authors:  Mingyang Hu; John J Briguglio; Markus Deserno
Journal:  Biophys J       Date:  2012-03-20       Impact factor: 4.033

6.  Protein-induced membrane curvature alters local membrane tension.

Authors:  Padmini Rangamani; Kranthi K Mandadap; George Oster
Journal:  Biophys J       Date:  2014-08-05       Impact factor: 4.033

7.  Interaction between surface shape and intra-surface viscous flow on lipid membranes.

Authors:  Padmini Rangamani; Ashutosh Agrawal; Kranthi K Mandadapu; George Oster; David J Steigmann
Journal:  Biomech Model Mechanobiol       Date:  2012-10-21

8.  Intrinsically disordered proteins drive membrane curvature.

Authors:  David J Busch; Justin R Houser; Carl C Hayden; Michael B Sherman; Eileen M Lafer; Jeanne C Stachowiak
Journal:  Nat Commun       Date:  2015-07-24       Impact factor: 14.919

9.  3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries.

Authors:  Christopher T Lee; Justin G Laughlin; Nils Angliviel de La Beaumelle; Rommie E Amaro; J Andrew McCammon; Ravi Ramamoorthi; Michael Holst; Padmini Rangamani
Journal:  PLoS Comput Biol       Date:  2020-04-06       Impact factor: 4.475

10.  Membrane binding and self-association of the epsin N-terminal homology domain.

Authors:  Chun-Liang Lai; Christine C Jao; Edward Lyman; Jennifer L Gallop; Brian J Peter; Harvey T McMahon; Ralf Langen; Gregory A Voth
Journal:  J Mol Biol       Date:  2012-08-24       Impact factor: 5.469

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  3 in total

1.  Dendritic spine morphology regulates calcium-dependent synaptic weight change.

Authors:  Miriam K Bell; Maven V Holst; Christopher T Lee; Padmini Rangamani
Journal:  J Gen Physiol       Date:  2022-07-12       Impact factor: 4.000

2.  Molecular mechanics underlying flat-to-round membrane budding in live secretory cells.

Authors:  Wonchul Shin; Ben Zucker; Nidhi Kundu; Sung Hoon Lee; Bo Shi; Chung Yu Chan; Xiaoli Guo; Jonathan T Harrison; Jaymie Moore Turechek; Jenny E Hinshaw; Michael M Kozlov; Ling-Gang Wu
Journal:  Nat Commun       Date:  2022-06-27       Impact factor: 17.694

3.  Mem3DG: Modeling membrane mechanochemical dynamics in 3D using discrete differential geometry.

Authors:  Cuncheng Zhu; Christopher T Lee; Padmini Rangamani
Journal:  Biophys Rep (N Y)       Date:  2022-06-15
  3 in total

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