| Literature DB >> 32588988 |
Jie Mei1, Xuejing Yang1, Dandan Xia1, Weijian Zhou1, Dingyi Gu1, Huiyu Wang1, Chaoying Liu1.
Abstract
BACKGROUND: Dishevelled (DVL) family members are crucial to Wnt-induced signaling transduction, and their expression is highly correlated with the progression of multiple malignant cancers. However, the expression profiles and exact prognostic values of DVLs in hepatocellular carcinoma (HCC) have not been explored until now.Entities:
Keywords: bioinformatics; dishevelled; gene expression; hepatocellular carcinoma
Mesh:
Substances:
Year: 2020 PMID: 32588988 PMCID: PMC7507050 DOI: 10.1002/mgg3.1384
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Figure 1Transcript levels of dishevelled (DVLs) in different types of cancer. Dysregulation of DVL mRNA was observed in various cancers. Threshold setting: p value: 0.05; fold change: all; gene rank: top 10%. Red represents upregulation, and blue represents downregulation. The numbers in the colored cells represent the numbers of dataset meeting the threshold
Transcriptional levels of dishevelled (DVLs) between hepatocellular carcinoma (HCC) and normal tissues
| DVLs | HCC samples | Normal samples | Fold‐change |
|
|
|---|---|---|---|---|---|
| DVL1 | 17 | 10 | −1.254 | −2.937 | .004 |
| DVL2 | 35 | 10 | 1.688 | 6.400 | 5.35E−07 |
| 103 | 76 | 1.554 | 5.303 | 1.83E−07 | |
| 22 | 21 | 1.344 | 4.637 | 2.83E−05 | |
| 225 | 220 | 1.498 | 13.444 | 3.72E−33 | |
| DVL3 | 4 | 76 | 1.458 | 4.659 | 0.003 |
| 104 | 76 | 1.530 | 6.425 | 6.12E−10 | |
| 22 | 21 | 1.980 | 6.349 | 2.38E−07 | |
| 35 | 10 | 2.253 | 6.017 | 1.23E−06 | |
| 13 | 10 | 1.425 | 2.914 | 5.00E−03 |
Seventeen liver cell dysplasia samples, excluded in this research.
Thirteen cirrhosis samples, excluded in this research.
Figure 2Expression of dishevelled (DVLs) in hepatocellular carcinoma (HCC) and normal tissues in the HCCDB database. Translational expression of three dishevelled (DVLs) (a) DVL1, (b) DVL2, and (c) DVL3 in HCC and normal tissues. *p < .05, **p < .01, ***p < .001
Figure 3Relationship between the expression of dishevelled (DVLs) and clinical stage or tumor grade in hepatocellular carcinoma (HCC). The translational expression of three DVLs was remarkably correlated with the patients' clinical stage and tumor grade, as well as patients who were in advanced stages, and poor differentiation tended to express higher mRNA expression of DVLs. (a–c) The highest mRNA expressions of DVLs were found in Stage 3. (d–f) The highest mRNA expressions of DVLs were found in tumor Grade 4. *p < .05, **p < .01, ***p < .001
Figure 4The prognostic values of dishevelled (DVLs) expression in hepatocellular carcinoma (HCC) patients. Kaplan–Meier plots show the association between the expression of DVLs and OS and DFS in HCC patients, respectively. OS curves of (a) DVL1, (b) DVL2, (c) DVL3, and (d) DVLs signature in HCC patients. DFS curves of (e) DVL1, (f) DVL2, (g) and (h) DVLs signature in HCC patients
Figure 5Correlation of the dishevelled (DVL) expression with the immune infiltration level in hepatocellular carcinoma (HCC). (a) DVL1 expression has negative correlations, while DVL2 and DVL3 expression have positive correlations with infiltrating levels of B cells, CD8+ T cells, CD4+ T cells, macrophages, neutrophils, and dendritic cells in HCC. (b) Correlation between DVL expression and immune cell infiltration revealed by ImmuCellAI
Figure 6Construction of protein‐protein interaction (PPI) network of dishevelled (DVLs). The PPI network for DVLs was constructed using the GeneMANIA website. The interconnections among proteins were explored in terms of physical interaction, coexpression, predicted, colocalization, common pathway, genetic interaction, and shared protein domains
List of 20 critical interacting genes of dishevelled (DVLs) uncovered by GeneMANIA
| Gene | Ensembl ID | Gene description |
|---|---|---|
| DAAM1 | ENSG00000100592.15 | Dishevelled associated activator of morphogenesis 1 |
| BRD7 | ENSG00000166164.15 | Bromodomain containing 7 |
| VANGL2 | ENSG00000162738.5 | VANGL planar cell polarity protein 2 |
| CSNK2A1 | ENSG00000101266.16 | Casein kinase 2, alpha 1 polypeptide |
| VANGL1 | ENSG00000173218.14 | VANGL planar cell polarity protein 1 |
| NKD2 | ENSG00000145506.13 | Naked cuticle homolog 2 |
| DAAM2 | ENSG00000146122.16 | Dishevelled associated activator of morphogenesis 2 |
| NKD1 | ENSG00000140807.5 | Naked cuticle homolog 1 |
| AXIN1 | ENSG00000103126.14 | Axin 1 |
| NXN | ENSG00000167693.16 | Nucleoredoxin |
| FRAT2 | ENSG00000181274.6 | Frequently rearranged in advanced T‐cell lymphomas 2 |
| PPM1A | ENSG00000100614.17 | Protein phosphatase, Mg2+/Mn2+ dependent, 1A |
| GSK3B | ENSG00000082701.14 | Glycogen synthase kinase 3 beta |
| SIRT1 | ENSG00000096717.11 | Sirtuin 1 |
| SENP2 | ENSG00000163904.12 | SUMO1/sentrin/SMT3 specific peptidase 2 |
| F2R | ENSG00000181104.6 | Coagulation factor II (thrombin) receptor |
| RAC1 | ENSG00000136238.17 | Ras‐related C3 botulinum toxin substrate 1 |
| FRAT1 | ENSG00000165879.8 | Frequently rearranged in advanced T‐cell lymphomas 1 |
| PRICKLE1 | ENSG00000139174.10 | Prickle homolog 1 |
| DYNLT1 | ENSG00000146425.10 | Dynein, light chain, Tctex‐type 1 |
Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses
| Category | Term | Count | Ratio (%) | Adjusted | Genes |
|---|---|---|---|---|---|
| BP | GO: 0016055 ~ Wnt signaling pathway | 12 | 52.17 | 4.90E‐14 | DVL2, SENP2, DVL3, NKD1, NKD2, CSNK2A1, NXN, GSK3B, PPM1A, BRD7, AXIN1, DVL1 |
| BP | GO: 1904886 ~ beta‐catenin destruction complex disassembly | 7 | 30.43 | 3.89E‐11 | DVL2, DVL3, GSK3B, FRAT1, FRAT2, AXIN1, DVL1 |
| BP | GO: 0090090 ~ negative regulation of canonical Wnt signaling pathway | 8 | 34.78 | 1.58E‐07 | DVL2, DVL3, NKD1, NKD2, PRICKLE1, GSK3B, AXIN1, DVL1 |
| BP | GO:0060071 ~ Wnt signaling pathway, planar cell polarity pathway | 7 | 30.43 | 1.76E‐07 | DVL2, DVL3, VANGL1, PRICKLE1, RAC1, DAAM1, DVL1 |
| BP | GO: 0001934 ~ positive regulation of protein phosphorylation | 7 | 30.43 | 9.90E‐07 | DVL2, SENP2, DVL3, RAC1, SIRT1, AXIN1, DVL1 |
| CC | GO: 0016328 ~ lateral plasma membrane | 6 | 26.09 | 3.91E‐07 | DVL2, NKD2, VANGL1, VANGL2, AXIN1, DVL1 |
| CC | GO: 1990909 ~ Wnt signalosome | 3 | 13.04 | 3.41E‐03 | DVL3, GSK3B, DVL1 |
| CC | GO: 0031410 ~ cytoplasmic vesicle | 5 | 21.74 | 3.69E‐03 | DVL2, SENP2, NKD2, AXIN1, DVL1 |
| CC | GO: 0005829 ~ cytosol | 13 | 56.52 | 4.05E‐03 | DVL2, DVL3, PPM1A, DAAM1, DVL1, CSNK2A1, PRICKLE1, NXN, GSK3B, RAC1, FRAT1, FRAT2, AXIN1 |
| CC | GO: 0016023 ~ cytoplasmic, membrane‐bounded vesicle | 4 | 17.39 | 1.05E‐02 | NKD2, RAC1, AXIN1, DVL1 |
| MF | GO: 0005515 ~ protein binding | 20 | 86.96 | 9.22E‐03 | DVL2, DVL3, NKD1, NKD2, VANGL1, VANGL2, PPM1A, DYNLT1, DAAM1, SIRT1, DVL1, SENP2, CSNK2A1, PRICKLE1, GSK3B, RAC1, FRAT1, BRD7, AXIN1, F2R |
| MF | GO: 0008013 ~ beta‐catenin binding | 4 | 17.39 | 1.17E‐02 | DVL3, GSK3B, AXIN1, DVL1 |
| MF | GO: 0048365 ~ Rac GTPase binding | 3 | 13.04 | 1.88E‐02 | DVL2, DVL3, DVL1 |
| MF | GO: 0019901 ~ protein kinase binding | 5 | 21.74 | 2.26E‐02 | DVL2, GSK3B, RAC1, AXIN1, DVL1 |
| MF | GO: 0005109 ~ frizzled binding | 3 | 13.04 | 2.53E‐02 | DVL2, DVL3, DVL1 |
| KEGG | hsa04310: Wnt signaling pathway | 17 | 73.91 | 1.85E‐23 | DVL2, DVL3, NKD1, NKD2, VANGL1, VANGL2, DAAM1, DAAM2, DVL1, SENP2, CSNK2A1, PRICKLE1, GSK3B, RAC1, FRAT1, FRAT2, AXIN1 |
| KEGG | hsa05217: Basal cell carcinoma | 5 | 21.74 | 4.28E‐04 | DVL2, DVL3, GSK3B, AXIN1, DVL1 |
| KEGG | hsa04550: Signaling pathways regulating pluripotency of stem cells | 5 | 21.74 | 8.88E‐03 | DVL2, DVL3, GSK3B, AXIN1, DVL1 |
| KEGG | hsa04390: Hippo signaling pathway | 5 | 21.74 | 9.45E‐03 | DVL2, DVL3, GSK3B, AXIN1, DVL1 |
| KEGG | hsa05200: Pathways in cancer | 7 | 30.43 | 1.13E‐02 | DVL2, DVL3, GSK3B, RAC1, AXIN1, F2R, DVL1 |