Literature DB >> 32586227

The Role of Liquid-Liquid Phase Separation in the Compartmentalization of Cell Nucleus and Spatial Genome Organization.

S V Razin1,2, A A Gavrilov3.   

Abstract

Functional compartmentalization of the cell nucleus plays an important role in the regulation of genome activity by providing accumulation of enzymes and auxiliary factors in the reaction centers, such as transcription factories, Cajal bodies, speckles, etc. The mechanisms behind the nucleus functional compartmentalization are still poorly understood. There are reasons to believe that the key role in the nucleus compartmentalization belongs to the process of liquid-liquid phase separation. In this brief review, we analyze results of experimental studies demonstrating that liquid-liquid phase separation not only governs functional compartmentalization of the cell nucleus but also contributes to the formation of the 3D genomic architecture.

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Year:  2020        PMID: 32586227     DOI: 10.1134/S0006297920060012

Source DB:  PubMed          Journal:  Biochemistry (Mosc)        ISSN: 0006-2979            Impact factor:   2.487


  11 in total

Review 1.  Nuclear speckles - a driving force in gene expression.

Authors:  Gabriel P Faber; Shani Nadav-Eliyahu; Yaron Shav-Tal
Journal:  J Cell Sci       Date:  2022-07-05       Impact factor: 5.235

Review 2.  Molecular Basis of the Function of Transcriptional Enhancers.

Authors:  Airat N Ibragimov; Oleg V Bylino; Yulii V Shidlovskii
Journal:  Cells       Date:  2020-07-05       Impact factor: 6.600

Review 3.  Predicting Genome Architecture: Challenges and Solutions.

Authors:  Polina Belokopytova; Veniamin Fishman
Journal:  Front Genet       Date:  2021-01-22       Impact factor: 4.599

Review 4.  How a cell decides its own fate: a single-cell view of molecular mechanisms and dynamics of cell-type specification.

Authors:  Maria Mircea; Stefan Semrau
Journal:  Biochem Soc Trans       Date:  2021-12-17       Impact factor: 5.407

5.  Capillary flow experiments for thermodynamic and kinetic characterization of protein liquid-liquid phase separation.

Authors:  Emil G P Stender; Soumik Ray; Rasmus K Norrild; Jacob Aunstrup Larsen; Daniel Petersen; Azad Farzadfard; Céline Galvagnion; Henrik Jensen; Alexander K Buell
Journal:  Nat Commun       Date:  2021-12-15       Impact factor: 14.919

6.  Mammalian nuclear speckles exhibit stable association with chromatin: a biochemical study.

Authors:  Komal Raina; Basuthkar J Rao
Journal:  Nucleus       Date:  2022-12       Impact factor: 4.197

7.  Comparison of genome architecture at two stages of male germline cell differentiation in Drosophila.

Authors:  Artem A Ilyin; Anna D Kononkova; Anastasia V Golova; Viktor V Shloma; Oxana M Olenkina; Valentina V Nenasheva; Yuri A Abramov; Alexei A Kotov; Daniil A Maksimov; Petr P Laktionov; Alexey V Pindyurin; Aleksandra A Galitsyna; Sergey V Ulianov; Ekaterina E Khrameeva; Mikhail S Gelfand; Stepan N Belyakin; Sergey V Razin; Yuri Y Shevelyov
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

Review 8.  Androgen receptor signaling and spatial chromatin organization in castration-resistant prostate cancer.

Authors:  Tianyi Zhou; Qin Feng
Journal:  Front Med (Lausanne)       Date:  2022-07-29

Review 9.  A nuclear enterprise: zooming in on nuclear organization and gene expression control in the African trypanosome.

Authors:  Joana R C Faria
Journal:  Parasitology       Date:  2021-01-07       Impact factor: 3.234

10.  Suppression of liquid-liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells.

Authors:  Sergey V Ulianov; Artem K Velichko; Mikhail D Magnitov; Artem V Luzhin; Arkadiy K Golov; Natalia Ovsyannikova; Igor I Kireev; Alexey S Gavrikov; Alexander S Mishin; Azat K Garaev; Alexander V Tyakht; Alexey A Gavrilov; Omar L Kantidze; Sergey V Razin
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

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