Literature DB >> 32577136

Building a global database of soil microbial biomass and function: a call for collaboration.

Gabriel R Smith1,2, Thomas W Crowther2, Nico Eisenhauer3,4, Johan van den Hoogen2.   

Abstract

Global analyses are emerging as valuable complements to local and regional scale studies in ecology and are useful for examining many of the major environmental issues that we face today. Soil ecology has significantly benefited from these developments, with recent syntheses unearthing interesting, unexpected biogeographic patterns in belowground biotic communities. However, some questions still remain unanswered, and the accuracy of these studies is inevitably limited by the extent of the data they draw upon. This is a particular problem in global ecology because most datasets used exhibit geographic bias in sample distribution. Here, we work towards addressing this problem with an open call for collaboration on a planned global analysis of soil phospholipid fatty acid and potential enzyme activity measurements. We summarize the current extent of our dataset, outline the planned analyses, and provide information for prospective collaborators who would like to contribute or learn more.

Entities:  

Year:  2020        PMID: 32577136      PMCID: PMC7311196          DOI: 10.25674/so91iss3pp140

Source DB:  PubMed          Journal:  Soil Org


  15 in total

1.  Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

Authors:  Anthony S Amend; Keith A Seifert; Thomas D Bruns
Journal:  Mol Ecol       Date:  2010-11-03       Impact factor: 6.185

2.  The diversity and biogeography of soil bacterial communities.

Authors:  Noah Fierer; Robert B Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-09       Impact factor: 11.205

Review 3.  The global soil community and its influence on biogeochemistry.

Authors:  T W Crowther; J van den Hoogen; J Wan; M A Mayes; A D Keiser; L Mo; C Averill; D S Maynard
Journal:  Science       Date:  2019-08-23       Impact factor: 47.728

4.  Soil nematode abundance and functional group composition at a global scale.

Authors:  Johan van den Hoogen; Stefan Geisen; Devin Routh; Howard Ferris; Walter Traunspurger; David A Wardle; Ron G M de Goede; Byron J Adams; Wasim Ahmad; Walter S Andriuzzi; Richard D Bardgett; Michael Bonkowski; Raquel Campos-Herrera; Juvenil E Cares; Tancredi Caruso; Larissa de Brito Caixeta; Xiaoyun Chen; Sofia R Costa; Rachel Creamer; José Mauro da Cunha Castro; Marie Dam; Djibril Djigal; Miguel Escuer; Bryan S Griffiths; Carmen Gutiérrez; Karin Hohberg; Daria Kalinkina; Paul Kardol; Alan Kergunteuil; Gerard Korthals; Valentyna Krashevska; Alexey A Kudrin; Qi Li; Wenju Liang; Matthew Magilton; Mariette Marais; José Antonio Rodríguez Martín; Elizaveta Matveeva; El Hassan Mayad; Christian Mulder; Peter Mullin; Roy Neilson; T A Duong Nguyen; Uffe N Nielsen; Hiroaki Okada; Juan Emilio Palomares Rius; Kaiwen Pan; Vlada Peneva; Loïc Pellissier; Julio Carlos Pereira da Silva; Camille Pitteloud; Thomas O Powers; Kirsten Powers; Casper W Quist; Sergio Rasmann; Sara Sánchez Moreno; Stefan Scheu; Heikki Setälä; Anna Sushchuk; Alexei V Tiunov; Jean Trap; Wim van der Putten; Mette Vestergård; Cecile Villenave; Lieven Waeyenberge; Diana H Wall; Rutger Wilschut; Daniel G Wright; Jiue-In Yang; Thomas Ward Crowther
Journal:  Nature       Date:  2019-07-24       Impact factor: 49.962

Review 5.  Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain.

Authors:  Philippe C Baveye; Wilfred Otten; Alexandra Kravchenko; María Balseiro-Romero; Éléonore Beckers; Maha Chalhoub; Christophe Darnault; Thilo Eickhorst; Patricia Garnier; Simona Hapca; Serkan Kiranyaz; Olivier Monga; Carsten W Mueller; Naoise Nunan; Valérie Pot; Steffen Schlüter; Hannes Schmidt; Hans-Jörg Vogel
Journal:  Front Microbiol       Date:  2018-08-27       Impact factor: 5.640

6.  Structure and function of the global topsoil microbiome.

Authors:  Mohammad Bahram; Falk Hildebrand; Sofia K Forslund; Jennifer L Anderson; Nadejda A Soudzilovskaia; Peter M Bodegom; Johan Bengtsson-Palme; Sten Anslan; Luis Pedro Coelho; Helery Harend; Jaime Huerta-Cepas; Marnix H Medema; Mia R Maltz; Sunil Mundra; Pål Axel Olsson; Mari Pent; Sergei Põlme; Shinichi Sunagawa; Martin Ryberg; Leho Tedersoo; Peer Bork
Journal:  Nature       Date:  2018-08-01       Impact factor: 49.962

Review 7.  Biodiversity conservation in agriculture requires a multi-scale approach.

Authors:  David J Gonthier; Katherine K Ennis; Serge Farinas; Hsun-Yi Hsieh; Aaron L Iverson; Péter Batáry; Jörgen Rudolphi; Teja Tscharntke; Bradley J Cardinale; Ivette Perfecto
Journal:  Proc Biol Sci       Date:  2014-09-22       Impact factor: 5.349

8.  Climatic vulnerabilities and ecological preferences of soil invertebrates across biomes.

Authors:  Felipe Bastida; David J Eldridge; Sebastián Abades; Fernando D Alfaro; Antonio Gallardo; Laura García-Velázquez; Carlos García; Stephen C Hart; Cecilia A Pérez; Fernanda Santos; Pankaj Trivedi; Mark A Williams; Manuel Delgado-Baquerizo
Journal:  Mol Ecol       Date:  2019-12-03       Impact factor: 6.185

9.  Priorities for research in soil ecology.

Authors:  Nico Eisenhauer; Pedro M Antunes; Alison E Bennett; Klaus Birkhofer; Andrew Bissett; Matthew A Bowker; Tancredi Caruso; Baodong Chen; David C Coleman; Wietse de Boer; Peter de Ruiter; Thomas H DeLuca; Francesco Frati; Bryan S Griffiths; Miranda M Hart; Stephan Hättenschwiler; Jari Haimi; Michael Heethoff; Nobuhiro Kaneko; Laura C Kelly; Hans Petter Leinaas; Zoë Lindo; Catriona Macdonald; Matthias C Rillig; Liliane Ruess; Stefan Scheu; Olaf Schmidt; Timothy R Seastedt; Nico M van Straalen; Alexei V Tiunov; Martin Zimmer; Jeff R Powell
Journal:  Pedobiologia (Jena)       Date:  2017-07       Impact factor: 1.812

10.  Detecting macroecological patterns in bacterial communities across independent studies of global soils.

Authors:  Kelly S Ramirez; Christopher G Knight; Mattias de Hollander; Francis Q Brearley; Bede Constantinides; Anne Cotton; Si Creer; Thomas W Crowther; John Davison; Manuel Delgado-Baquerizo; Ellen Dorrepaal; David R Elliott; Graeme Fox; Robert I Griffiths; Chris Hale; Kyle Hartman; Ashley Houlden; David L Jones; Eveline J Krab; Fernando T Maestre; Krista L McGuire; Sylvain Monteux; Caroline H Orr; Wim H van der Putten; Ian S Roberts; David A Robinson; Jennifer D Rocca; Jennifer Rowntree; Klaus Schlaeppi; Matthew Shepherd; Brajesh K Singh; Angela L Straathof; Jennifer M Bhatnagar; Cécile Thion; Marcel G A van der Heijden; Franciska T de Vries
Journal:  Nat Microbiol       Date:  2017-11-20       Impact factor: 17.745

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  2 in total

1.  Metabolites of soil microorganisms modulate amyloid β production in Alzheimer's neurons.

Authors:  Takayuki Kondo; Tsuyoshi Yamamoto; Kaoru Okayama; Hideki Narumi; Haruhisa Inoue
Journal:  Sci Rep       Date:  2022-03-02       Impact factor: 4.379

2.  Drivers and trends of global soil microbial carbon over two decades.

Authors:  Guillaume Patoine; Nico Eisenhauer; Simone Cesarz; Helen R P Phillips; Xiaofeng Xu; Lihua Zhang; Carlos A Guerra
Journal:  Nat Commun       Date:  2022-07-20       Impact factor: 17.694

  2 in total

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