Literature DB >> 32571930

Two radical-dependent mechanisms for anaerobic degradation of the globally abundant organosulfur compound dihydroxypropanesulfonate.

Jiayi Liu1,2, Yifeng Wei3, Lianyun Lin1, Lin Teng1, Jinyu Yin1, Qiang Lu1, Jiawei Chen1, Yuchun Zheng1, Yaxin Li1, Runyao Xu1, Weixiang Zhai4, Yangping Liu4, Yanhong Liu5, Peng Cao6, Ee Lui Ang3, Huimin Zhao7,8, Zhiguang Yuchi9, Yan Zhang9,2.   

Abstract

2(S)-dihydroxypropanesulfonate (DHPS) is a microbial degradation product of 6-deoxy-6-sulfo-d-glucopyranose (sulfoquinovose), a component of plant sulfolipid with an estimated annual production of 1010 tons. DHPS is also at millimolar levels in highly abundant marine phytoplankton. Its degradation and sulfur recycling by microbes, thus, play important roles in the biogeochemical sulfur cycle. However, DHPS degradative pathways in the anaerobic biosphere are not well understood. Here, we report the discovery and characterization of two O2-sensitive glycyl radical enzymes that use distinct mechanisms for DHPS degradation. DHPS-sulfolyase (HpsG) in sulfate- and sulfite-reducing bacteria catalyzes C-S cleavage to release sulfite for use as a terminal electron acceptor in respiration, producing H2S. DHPS-dehydratase (HpfG), in fermenting bacteria, catalyzes C-O cleavage to generate 3-sulfopropionaldehyde, subsequently reduced by the NADH-dependent sulfopropionaldehyde reductase (HpfD). Both enzymes are present in bacteria from diverse environments including human gut, suggesting the contribution of enzymatic radical chemistry to sulfur flux in various anaerobic niches.

Entities:  

Keywords:  dihydroxypropanesulfonate; glycyl radical enzyme; gut bacteria; sulfate- and sulfite-reducing bacteria; sulfoglycolysis

Mesh:

Substances:

Year:  2020        PMID: 32571930      PMCID: PMC7354929          DOI: 10.1073/pnas.2003434117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

Review 2.  Tripartite ATP-independent periplasmic (TRAP) transporters in bacteria and archaea.

Authors:  Christopher Mulligan; Marcus Fischer; Gavin H Thomas
Journal:  FEMS Microbiol Rev       Date:  2011-01       Impact factor: 16.408

3.  An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database.

Authors:  J K Eng; A L McCormack; J R Yates
Journal:  J Am Soc Mass Spectrom       Date:  1994-11       Impact factor: 3.109

4.  Metabolism of 2,3-dihydroxypropane-1-sulfonate by marine bacteria.

Authors:  Ersin Celik; Michael Maczka; Nils Bergen; Thorsten Brinkhoff; Stefan Schulz; Jeroen S Dickschat
Journal:  Org Biomol Chem       Date:  2017-04-05       Impact factor: 3.876

Review 5.  Sulfur metabolites in the pelagic ocean.

Authors:  Mary Ann Moran; Bryndan P Durham
Journal:  Nat Rev Microbiol       Date:  2019-09-04       Impact factor: 60.633

Review 6.  Glycyl radical activating enzymes: structure, mechanism, and substrate interactions.

Authors:  Krista A Shisler; Joan B Broderick
Journal:  Arch Biochem Biophys       Date:  2014-01-31       Impact factor: 4.013

7.  Computational Tale of Two Enzymes: Glycerol Dehydration With or Without B12.

Authors:  Borislav Kovačević; Danijela Barić; Darko Babić; Luka Bilić; Marko Hanževački; Gregory M Sandala; Leo Radom; David M Smith
Journal:  J Am Chem Soc       Date:  2018-06-29       Impact factor: 15.419

8.  Sulfonate-based networks between eukaryotic phytoplankton and heterotrophic bacteria in the surface ocean.

Authors:  Bryndan P Durham; Angela K Boysen; Laura T Carlson; Ryan D Groussman; Katherine R Heal; Kelsy R Cain; Rhonda L Morales; Sacha N Coesel; Robert M Morris; Anitra E Ingalls; E Virginia Armbrust
Journal:  Nat Microbiol       Date:  2019-07-22       Impact factor: 17.745

9.  Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.

Authors:  Matthew W Vetting; Nawar Al-Obaidi; Suwen Zhao; Brian San Francisco; Jungwook Kim; Daniel J Wichelecki; Jason T Bouvier; Jose O Solbiati; Hoan Vu; Xinshuai Zhang; Dmitry A Rodionov; James D Love; Brandan S Hillerich; Ronald D Seidel; Ronald J Quinn; Andrei L Osterman; John E Cronan; Matthew P Jacobson; John A Gerlt; Steven C Almo
Journal:  Biochemistry       Date:  2015-01-16       Impact factor: 3.162

10.  Radical-mediated C-S bond cleavage in C2 sulfonate degradation by anaerobic bacteria.

Authors:  Meining Xing; Yifeng Wei; Yan Zhou; Jun Zhang; Lianyun Lin; Yiling Hu; Gaoqun Hua; Ankanahalli N Nanjaraj Urs; Dazhi Liu; Feifei Wang; Cuixia Guo; Yang Tong; Mengya Li; Yanhong Liu; Ee Lui Ang; Huimin Zhao; Zhiguang Yuchi; Yan Zhang
Journal:  Nat Commun       Date:  2019-04-08       Impact factor: 14.919

View more
  5 in total

1.  Mechanistic Studies of a Skatole-Forming Glycyl Radical Enzyme Suggest Reaction Initiation via Hydrogen Atom Transfer.

Authors:  Beverly Fu; Azadeh Nazemi; Benjamin J Levin; Zhongyue Yang; Heather J Kulik; Emily P Balskus
Journal:  J Am Chem Soc       Date:  2022-06-15       Impact factor: 16.383

Review 2.  Discovery of new enzymatic functions and metabolic pathways using genomic enzymology web tools.

Authors:  Remi Zallot; Nils Oberg; John A Gerlt
Journal:  Curr Opin Biotechnol       Date:  2021-01-05       Impact factor: 10.279

3.  Bacterial microcompartments for isethionate desulfonation in the taurine-degrading human-gut bacterium Bilophila wadsworthia.

Authors:  Anna G Burrichter; Stefanie Dörr; Paavo Bergmann; Sebastian Haiß; Anja Keller; Corentin Fournier; Paolo Franchini; Erika Isono; David Schleheck
Journal:  BMC Microbiol       Date:  2021-12-13       Impact factor: 3.605

4.  Molecular basis of C-S bond cleavage in the glycyl radical enzyme isethionate sulfite-lyase.

Authors:  Christopher D Dawson; Stephania M Irwin; Lindsey R F Backman; Chip Le; Jennifer X Wang; Vyshnavi Vennelakanti; Zhongyue Yang; Heather J Kulik; Catherine L Drennan; Emily P Balskus
Journal:  Cell Chem Biol       Date:  2021-03-26       Impact factor: 8.116

5.  Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut.

Authors:  Buck T Hanson; K Dimitri Kits; Jessica Löffler; Anna G Burrichter; Alexander Fiedler; Karin Denger; Benjamin Frommeyer; Craig W Herbold; Thomas Rattei; Nicolai Karcher; Nicola Segata; David Schleheck; Alexander Loy
Journal:  ISME J       Date:  2021-03-31       Impact factor: 11.217

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.