| Literature DB >> 32569635 |
Kun Wang1, Xin Zhang2, Jiaxing Sun3, Jia Ye4, Feilong Wang3, Jing Hua3, Huayu Zhang5, Ting Shi6, Qiang Li3, Xiaodong Wu7.
Abstract
BACKGROUND: The viral shedding duration of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has not been fully defined. Consecutive detection of SARS-CoV-2 RNA from respiratory tract specimens is essential for determining duration of virus shedding and providing evidence to optimize the clinical management of coronavirus disease 2019 (COVID-19). RESEARCH QUESTION: What are the shedding durations of SARS-CoV-2 RNA in the upper and lower respiratory tract specimens? What are their associated risk factors? STUDY DESIGN AND METHODS: A total of 68 patients with COVID-19 admitted to Wuhan Taikang Tongji Hospital and Huoshenshan Hospital from February 10, 2020, to March 20, 2020, were recruited. Consecutive SARS-CoV-2 RNA detection from paired specimens of nasopharyngeal swab (NPS) and sputum were carried out. The clinical characteristics of patients were recorded for further analysis.Entities:
Keywords: COVID-19; SARS-CoV-2; nasopharyngeal swab; sputum; virus shedding
Mesh:
Substances:
Year: 2020 PMID: 32569635 PMCID: PMC7305751 DOI: 10.1016/j.chest.2020.06.015
Source DB: PubMed Journal: Chest ISSN: 0012-3692 Impact factor: 9.410
Demographic and Clinical Characteristics of 68 Patients With COVID-19 (N = 68)
| Demographic and Clinical Characteristics | Value |
|---|---|
| Age, y | 67 (57-72) |
| Age ≥ 65 y | 40 (58.8) |
| Male | 36 (52.9) |
| Underlying diseases | |
| Chronic lung disease | 12 (17.6) |
| Diabetes mellitus | 12 (17.6) |
| Cardiac disease | 9 (13.2) |
| Malignant tumor | 3 (4.4) |
| Clinical features | |
| Fever | 50 (73.5) |
| Temperature | 38.5°C (38°C-39°C) |
| Cough | 31 (45.6) |
| Dyspnea | 23 (33.8) |
| Fatigue | 22 (32.4) |
| Diarrhea | 7 (10.3) |
| Patients diagnosed with COVID-19 at admission | |
| By NPS (+) | 43 (63.2) |
| By IgM/IgG (+) | 25 (36.8) |
| IgM/IgG against SARS-CoV-2 during hospitalization | |
| IgM positive | 52 (76.5) |
| IgG positive | 57 (83.8) |
| Respiratory support | |
| NPPV | 25 (36.8) |
| HFNC | 21 (30.9) |
| Conventional oxygen therapy | 18 (26.5) |
| Intubation | 5 (7.4) |
| CURB-65 score | |
| 1 | 30 (44.1) |
| 2 | 36 (52.9) |
| 3 | 2 (2.9) |
| Duration of different symptoms in survivors, d | |
| Fever | 11.0 (8.0-13.0) |
| Cough | 20.0 (11.0-26.0) |
| Diarrhea | 4.0 (2.0-5.0) |
| Mortality | 3 (4.4) |
Values are No. (%) or median (interquartile range). COVID-19 = coronavirus disease 2019; HFNC = high-flow nasal cannula oxygen therapy; NPPV = noninvasive positive-pressure ventilation; NPS = nasopharyngeal swab; SARS-CoV-2 = severe acute respiratory syndrome coronavirus 2.
Figure 1Detection of severe acute respiratory syndrome coronavirus 2 RNA in nasopharyngeal swab and sputum specimens from patients with coronavirus disease 2019 during hospitalization. NPS = nasopharyngeal swab specimen; SP = sputum specimen.
Figure 2Results of SARS-CoV-2 RNA detection in 16 patients with both NPS and SP positive samples, by timing of first positive testing for SARS-CoV-2 RNA. Day 0 is the day of first positive testing for SARS-CoV-2 RNA in each patient. D = day; SARS-CoV-2 = severe acute respiratory syndrome coronavirus 2. See Figure 1 legend for expansion of other abbreviations.
Factors Associated With SARS-CoV-2 RNA Detection Yields in Nasopharyngeal Swab and Sputum Specimens During the Hospitalization
| Characteristics | NPS (+) | NPS (−) | SP (+) | SP (−) | NPS (+) and SP (+) | Others (n = 52) | |||
|---|---|---|---|---|---|---|---|---|---|
| Chronic lung disease | 8 | 4 | .646 | 10 | 2 | .003 | 6 | 6 | .017 |
| Diabetes mellitus | 5 | 7 | .010 | 9 | 3 | .018 | 3 | 9 | .895 |
| Fever | 35 | 15 | .398 | 25 | 25 | .103 | 14 | 36 | .147 |
| Cough | 23 | 7 | .452 | 13 | 17 | .908 | 7 | 23 | .973 |
| Fatigue | 16 | 6 | .932 | 9 | 13 | .712 | 6 | 16 | .615 |
| Diarrhea | 6 | 1 | .395 | 4 | 3 | .464 | 3 | 4 | .203 |
| Steroids | 12 | 8 | .153 | 13 | 7 | .025 | 7 | 13 | .150 |
| Lymphocyte numbers, mean ± SD | 0.88 ± 0.47 | 1.13 ± 0.75 | .721 | 0.99 ± 0. 47 | 1.14 ± 0.89 | .135 | 1.00 ± 0.20 | 1.00 ± 0.06 | .517 |
Values are number of patients or as otherwise indicated. SP = sputum specimen. See Table 1 legend for expansion of other abbreviations.
Figure 3A-C, Cumulative proportion of patients who had detectable SARS-CoV-2 RNA by days after onset of illness: (A) from both NPS and SP specimens, (B) from NPS and SP separately, and (C) with age < 65 vs ≥ 65 y. See Figure 1 and 2 legends for expansion of abbreviations.
Multivariable Analyses of Risk Factors Associated With Duration of SARS-CoV-2 RNA Detection in Hospitalized Patients
| Characteristics | Unadjusted HR (95% CI) | Adjusted HR | ||
|---|---|---|---|---|
| Age ≥ 65y | 1.66 (0.99- 2.82) | .06 | 1.71 (1.01-2.93) | .04 |
| Sex, male | 1.04 (0.63-1.73) | .867 | 1.21 (0.69-2.13) | .50 |
| Diabetes mellitus | 0.57 (0.30-1.08) | .18 | 0.64 (0.31-1.29) | .21 |
| Chronic lung diseases | 0.72 (0.38-1.36) | .30 | 0.88 (0.40-1.97) | .76 |
| Lymphocyte counts | 1.01 (.083-1.23) | .91 | 0.98 (0.78-1.21) | .83 |
| Systemic steroids | 0.74 (0.41-1.32) | .30 | 1.08 (0.51-2.24) | .84 |
| Cardiac diseases | 0.59 (0.29-1.20) | .12 | 1.00 (0.45-2.27) | .99 |
| Hypertension | 0.61 (0.34-1.10) | .09 | 0.55 (0.26-1.16) | .76 |
| Malignant tumor | 0.23 (0.30-1.70) | .07 | 0.15 (0.16-1.49) | .11 |
HR, hazard ratio. See Table 1 legend for expansion of other abbreviations.
Adjusted for age and sex.
Figure 4Illustrated information about two cases that had recurrent positive detection of SARS-COV-2 RNA from nasopharyngeal swab. d = day; DM = diabetes mellitus. See Figure 1 and 2 legends for expansion of other abbreviations.