Literature DB >> 32569517

Synthetic Genomes.

Weimin Zhang1, Leslie A Mitchell1, Joel S Bader2, Jef D Boeke1,3.   

Abstract

DNA synthesis technology has progressed to the point that it is now practical to synthesize entire genomes. Quite a variety of methods have been developed, first to synthesize single genes but ultimately to massively edit or write from scratch entire genomes. Synthetic genomes can essentially be clones of native sequences, but this approach does not teach us much new biology. The ability to endow genomes with novel properties offers special promise for addressing questions not easily approachable with conventional gene-at-a-time methods. These include questions about evolution and about how genomes are fundamentally wired informationally, metabolically, and genetically. The techniques and technologies relating to how to design, build, and deliver big DNA at the genome scale are reviewed here. A fuller understanding of these principles may someday lead to the ability to truly design genomes from scratch.

Keywords:  DNA synthesis; Sc2.0; ethics; genome design; genome editing

Mesh:

Substances:

Year:  2020        PMID: 32569517     DOI: 10.1146/annurev-biochem-013118-110704

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  10 in total

Review 1.  Synthetic chromosomes, genomes, viruses, and cells.

Authors:  J Craig Venter; John I Glass; Clyde A Hutchison; Sanjay Vashee
Journal:  Cell       Date:  2022-07-21       Impact factor: 66.850

2.  Rapid 40 kb Genome Construction from 52 Parts through Data-optimized Assembly Design.

Authors:  John M Pryor; Vladimir Potapov; Katharina Bilotti; Nilisha Pokhrel; Gregory J S Lohman
Journal:  ACS Synth Biol       Date:  2022-05-25       Impact factor: 5.249

3.  Saccharomyces cerevisiae as a Heterologous Host for Natural Products.

Authors:  Maximilian Otto; Dany Liu; Verena Siewers
Journal:  Methods Mol Biol       Date:  2022

4.  A conditional counterselectable Piga knockout in mouse embryonic stem cells for advanced genome writing applications.

Authors:  Weimin Zhang; Ran Brosh; Laura H McCulloch; Yinan Zhu; Hannah Ashe; Gwen Ellis; Brendan R Camellato; Sang Yong Kim; Matthew T Maurano; Jef D Boeke
Journal:  iScience       Date:  2022-05-23

5.  De novo assembly and delivery to mouse cells of a 101 kb functional human gene.

Authors:  Leslie A Mitchell; Laura H McCulloch; Sudarshan Pinglay; Henri Berger; Nazario Bosco; Ran Brosh; Milica Bulajić; Emily Huang; Megan S Hogan; James A Martin; Esteban O Mazzoni; Teresa Davoli; Matthew T Maurano; Jef D Boeke
Journal:  Genetics       Date:  2021-05-17       Impact factor: 4.562

6.  Genome editing of immune cells using CRISPR/Cas9.

Authors:  Segi Kim; Cedric Hupperetz; Seongjoon Lim; Chan Hyuk Kim
Journal:  BMB Rep       Date:  2021-01       Impact factor: 4.778

7.  A synthetic 'essentialome' for axenic culturing of 'Candidatus Liberibacter asiaticus'.

Authors:  Lulu Cai; Mukesh Jain; Alejandra Munoz-Bodnar; Jose C Huguet-Tapia; Dean W Gabriel
Journal:  BMC Res Notes       Date:  2022-04-01

Review 8.  Synthetic Genomics From a Yeast Perspective.

Authors:  Charlotte C Koster; Eline D Postma; Ewout Knibbe; Céline Cleij; Pascale Daran-Lapujade
Journal:  Front Bioeng Biotechnol       Date:  2022-03-21

9.  Enzymatic Supercoiling of Bacterial Chromosomes Facilitates Genome Manipulation.

Authors:  Hironobu Fujita; Ayane Osaku; Yuto Sakane; Koki Yoshida; Kayoko Yamada; Seia Nara; Takahito Mukai; Masayuki Su'etsugu
Journal:  ACS Synth Biol       Date:  2022-08-23       Impact factor: 5.249

10.  Systematic dissection of key factors governing recombination outcomes by GCE-SCRaMbLE.

Authors:  Huiming Zhang; Xian Fu; Xuemei Gong; Yun Wang; Haolin Zhang; Yu Zhao; Yue Shen
Journal:  Nat Commun       Date:  2022-10-03       Impact factor: 17.694

  10 in total

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