| Literature DB >> 32566182 |
Alessandra Anna Altomare1, Giovanna Baron1, Giancarlo Aldini1, Marina Carini1, Alfonsina D'Amato1.
Abstract
To characterize the high-value protein content and to discover new bioactive peptides, present in edible organisms, as silkworm pupae, semiquantitative analytical approach has been applied. The combination of appropriate protein extraction methods, semiquantitative high-resolution mass spectrometry analyses of peptides, in silico bioactivity and gene ontology analyses, allowed protein profiling of silkworm pupae (778 gene products) and the characterization of bioactive peptides. The semiquantitative analysis, based on the measurement of the emPAI, revealed the presence of high-abundance class of proteins, such as larval storage protein (LSP) class. This class of proteins, beside its nutrient reservoir activity, is of great pharmaceutical interest for their efficacy in cardiovascular diseases. Potential allergens were also characterized and quantified, such as arginine kinase, thiol peroxiredoxin, and Bom m 9. This powerful bioanalytical approach proved the potential industrial applications of Bombyx mori pupae, as source of high-value proteins in a green and "circular" economy perspective.Entities:
Keywords: Bombyx mori; bioactive peptides; high‐resolution mass spectrometry; protein profiling; semiquantitative analyses
Year: 2020 PMID: 32566182 PMCID: PMC7300080 DOI: 10.1002/fsn3.1546
Source DB: PubMed Journal: Food Sci Nutr ISSN: 2048-7177 Impact factor: 2.863
FIGURE 1Flowchart of protein extraction protocol, showing the different methods used to purify proteins
Results of Bradford Assay of protein lysates, obtained by different protocols
| Weight of raw material (g) | Resuspension volume after TCA precipitation (ml) | Protein concentration—(mg/ml) | Protein extraction (mg) | |
|---|---|---|---|---|
| Pellet (Aqu. Extr.) | 3.67 (N2 dried) | 2 | 13.11 | 26.21 |
| Supernatant (Aqu. Extr.) | 3.33* | 2 | 0.69 | 1.38 |
| Protein fraction (Folch Extr.) | 1.29 (N2 dried) | 1 | 8.83 | 8.83 |
FIGURE 2SDS‐PAGE separation of the precipitate (track a), supernatant (track b) obtained by aqueous fractionation versus the protein fraction obtained by Folch extraction (track c). Each lane has been cut into 10 segments, the proteins digested and sent to MS analysis. Mr: molecular mass ladder. Staining with Bio‐Safe Coomassie blue
FIGURE 3Semiquantitative analysis. The pie chart shows the percentage distribution of reported class of proteins in silkworm pupae processed sample
FIGURE 4Gene Ontology enrichment by ClueGo in Cytoscape
Highest score identified peptide sequences with potential bioactivity by Peptide Ranker (http://bioware.ucd.ie/~testing/biowareweb/) and by CAMP (Collection of Anti‐Microbial Peptides) database (http://www.bicnirrh.res.in/antimicrobial/)
| Sequence | Results with discriminant analysis classifier | Peptide Ranker—Bioaware | |||||
|---|---|---|---|---|---|---|---|
| Class | Pep. length | AMP probability | Bioactivity probability score | Geometric means | Protein description | Acc. number | |
| DNKDCFL | AMP | 7 | 0.996 | 0.793914 | 0.889 | Basic juvenile hormone‐suppressible protein 2 [ | H9JH62 |
| NNKMNCM | AMP | 7 | 0.995 | 0.591135 | 0.767 | 30K protein 2 OS = | E5EVW2/H9J4F6 |
| TREQWF | AMP | 6 | 0.999 | 0.51067 | 0.714 | 30K protein 6 [ | H9J4F5 |
| DNGSGMCK | AMP | 8 | 0.881 | 0.573337 | 0.711 | actin, muscle‐type A2 [ | H9JWN1 |
| ESCMNCR | AMP | 7 | 0.724 | 0.689232 | 0.706 | Basic juvenile hormone‐suppressible protein 2 [ | H9JH62 |
| ESCMNCRW | NAMP | 8 | 0.48 | 0.897656 | 0.656 | ||
| NDNRINF | AMP | 7 | 0.791 | 0.523558 | 0.644 | Basic juvenile hormone‐suppressible protein 2 [ | H9JH62 |
| RSDCHGF | NAMP | 7 | 0.365 | 0.814214 | 0.545 | ||
| KDCYTNM | AMP | 7 | 0.531 | 0.558929 | 0.545 | Silkworm storage protein [ | H9JHM9 |
| DSFDKNL | NAMP | 7 | 0.417 | 0.529957 | 0.470 | ||
| KNCESCMNC | NAMP | 9 | 0.354 | 0.533621 | 0.435 | ||
| KNCESCMNCR | NAMP | 10 | 0.209 | 0.713351 | 0.386 | ||
| QNGKMDF | NAMP | 7 | 0.108 | 0.61261 | 0.257 | ||
| CMNCRW | NAMP | 6 | 0.054 | 0.953337 | 0.227 | ||
| DQCIKNF | NAMP | 7 | 0.03 | 0.665058 | 0.141 | ||
| NCESCMNCRW | NAMP | 10 | 0.021 | 0.91836 | 0.139 | ||
| NCESCMNC | NAMP | 8 | 0.016 | 0.643111 | 0.101 | ||
| QRSDCHGF | NAMP | 8 | 0.007 | 0.778495 | 0.074 | ||
| QTCDMKM | NAMP | 7 | 0.005 | 0.58367 | 0.054 | ||
| NCESCMNCR | NAMP | 9 | 0.003 | 0.783407 | 0.048 | ||
| PRGTEGGF | NAMP | 8 | 0.003 | 0.501702 | 0.039 | ||
| CQSHCRA | NAMP | 7 | 0.002 | 0.536962 | 0.033 | ||
| SDWRNF | NAMP | 6 | 0.001 | 0.912881 | 0.030 | ||