| Literature DB >> 32564518 |
Jing Ye1, Yan Wen1, Xiaomeng Chu1, Ping Li1, Bolun Cheng1, Shiqiang Cheng1, Li Liu1, Lu Zhang1, Mei Ma1, Xin Qi1, Chujun Liang1, Om Prakash Kafle1, Yumeng Jia1, Cuiyan Wu1, Sen Wang1, Xi Wang1, Yujie Ning1, Feng Zhang1.
Abstract
BACKGROUND: Herpes simplex virus-1 (HSV-1) infection is reported to be associated with depression. But limited efforts were made to investigate the relationship between HSV-1 infection and the risk of depression, especially from the genetic perspective.Entities:
Keywords: depression; gene-environment interaction; herpes simplex virus (HSV)
Year: 2020 PMID: 32564518 PMCID: PMC7403656 DOI: 10.1002/ctm2.108
Source DB: PubMed Journal: Clin Transl Med ISSN: 2001-1326
Basic characteristics of study sample from UK Biobank
| HSV‐1 antibody/seropositivity | ||
|---|---|---|
| Depression | Case/Control | 1464/1487 |
| Sex (Female) | 1737 (58.9%) | |
| Age (SD) | 56.2 (7.8) | |
| PHQ score (Continue variable) | Sample | 2839 |
| Sex (Female) | 1664 (58.6%) | |
| Age (SD) | 55.9 (7.9) | |
| PHQ score (Category variable) | Case/Control | 769/922 |
| Sex (Female) | 976 (57.7%) | |
| Age (SD) | 55.6 (8.0) |
Note. Age was described as Mean (standard deviation). The PHQ score is called the patient health questionnaire score and is used to describe the depression status of the participants.
Abbreviation: PHQ, Patient Health Questionnaire.
Association among depression, PHQ score, and HSV‐1
| Outcome | Instrument |
| SE |
|
| OR (95% CI) |
|---|---|---|---|---|---|---|
| Depression | HSV‐1 antibody | .09 | 0.04 | 2.26 | .0240 | 1.09 (1.02‐1.16) |
| HSV‐1 seropositivity | .25 | 0.08 | 3.01 | .0026 | 1.28 (1.12‐1.47) | |
| PHQ score (Continue variable) | HSV‐1 antibody | .02 | 0.02 | 1.19 | .2329 | – |
| HSV‐1 seropositivity | .01 | 0.04 | 0.35 | .7257 | – | |
| PHQ score (Category variable) | HSV‐1 antibody | .09 | 0.05 | 1.68 | .0939 | 1.09 (1.00‐1.19) |
| HSV‐1 seropositivity | .11 | 0.11 | 1.02 | .3074 | 1.12 (0.94‐1.33) |
Note. Logistic regression was used to test the association between depression and HSV‐1. Linear regression was used to test the association between PHQ score and HSV‐1.
Abbreviations: CI, confidence interval; OR, odd ratios; PHQ, Patient Health Questionnaire;SE, standard error;T, ‐test.
Summary of gene‐environment interaction analysis between SNP and HSV‐1 for depression and PHQ score
| CHR | SNP | Gene | Model |
| |
|---|---|---|---|---|---|
| PHQ score | 20 | rs6094791 | SULF2 | ADD × HSV‐1 | 8.60 × 10−9 |
| 12 | rs11059753 | TMEM132C | DOM × HSV‐1 | 1.58 × 10−8 | |
| 6 | rs9352374 | ADD × HSV‐1 | 3.49 × 10−8 | ||
| 6 | rs9343481 | ADD × HSV‐1 | 3.49 × 10−8 | ||
| 10 | rs1865749 | ADD × HSV‐1 | 7.07 × 10−8 | ||
| 10 | rs12358630 | ASAH2 | ADD × HSV‐1 | 1.97 × 10−7 | |
| 10 | rs2813305 | ASAH2 | ADD × HSV‐1 | 2.08 × 10−7 | |
| 20 | rs6094791 | SULF2 | DOM × HSV‐1 | 4.13 × 10−7 | |
| Depression | 5 | rs465787 | DOM × HSV‐1 | 1.40 × 10−6 | |
| 5 | rs377094 | DOM × HSV‐1 | 1.87 × 10−6 | ||
| 5 | rs414421 | DOM × HSV‐1 | 1.88 × 10−6 | ||
| 6 | rs113444436 | ARMC12 | ADD × HSV‐1 | 1.92 × 10−6 | |
| 5 | rs160730 | DOM × HSV‐1 | 2.41 × 10−6 |
Abbreviations: ADD, additive effect; CHR, chromosome; DOM, dominance deviation; P, estimates of the effect of interaction on PHQ score by using ADDxHSV‐1 or DOMxHSV‐1; PHQ, Patient Health Questionnaire.
Figure 1Genomic regions interacting with HSV‐1 for PHQ score
Note. From the center, the first circos depicts the –log10 P‐values of each variant due to double exposure, that is, the effect of both SNP allele and HSV‐1. The second circos illustrates the effect of HSV‐1. The third circos depicts the effect of the SNP allele. The fourth circos shows chromosome density. Red plots represent the P‐value < 5 × 10−7 and green plots represent P‐value < 1 × 10−5. The plots were generated using the “CMplot” R script (https://github.com/YinLiLin/R-CMplot).
Abbreviations: ADD, additive effect; DOM, dominance deviation.
Figure 2Genomic regions interacting with HSV‐1 for depression
Note. From the center, the first circos depicts the –log10 P‐values of each variant due to double exposure, that is, the effect of both SNP allele and HSV‐1. The second circos illustrates the effect of HSV‐1. The third circos depicts the effect of the SNP allele. The fourth circos shows chromosome density. Red plots represent the P‐value < 5 × 10−7 and green plots represent P‐value < 1 × 10−5. The plots were generated using the “CMplot” R script (https://github.com/YinLiLin/R-CMplot). Abbreviations: ADD, additive effect; DOM, dominance deviation.
Figure 3Distribution of pathways for depression and PHQ score
Note. Venn graph shows the distribution of pathways for depression and PHQ score.