| Literature DB >> 32560523 |
Carly C Carter1, Thomas R Cundari1.
Abstract
In the present density functional theory (DFT) research, nine difEntities:
Keywords: CH activation; DFT; computational; divalent; methane; methane activation
Mesh:
Substances:
Year: 2020 PMID: 32560523 PMCID: PMC7355694 DOI: 10.3390/molecules25122794
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Known compounds with A–E bonds between divalent metals and triels with an A–E–A motif. I [13], II [14], III [15], IV [18], and V [18] (Cambridge Structural Database (CSD) refcodes can be found in the Supplementary Materials).
Figure 2A–E model complexes studied in this research, which were inspired by experimentally characterized complexes. [13,14,15,18,19] E = Be, Mg, Zn; A = B, Al, Ga; Me = methyl.
B3LYP/6-311++G(d,p) computed A–E bond lengths (Å).
| E-A Combination | Optimized Bond Length (Å) |
|---|---|
| Be–B | 1.84 |
| Be–Al | 2.28 |
| Be–Ga | 2.17 |
| Mg–B | 2.26 |
| Mg–Al | 2.67 |
| Mg–Ga | 2.56 |
| Zn–B | 2.07 |
| Zn–Al | 2.47 |
| Zn–Ga | 2.39 |
Figure 3The two regiochemistries studied for activating a methane C–H bond using the A–E bond of the model reactant complexes.
Figure 4Calculated free energies (in kcal/mol) for both 1,2 (blue) and 2,1 (orange) methane C–H activation regiochemistries for all A–E combinations studied herein.
B3LYP/6-311++G(d,p)-calculated bond dissociation free energies (BDFE) for Be and Al products.
| Type of Addition by Methane | Bond of Interest | BDFE (kcal/mol) |
|---|---|---|
| 1,2 | Be–Me | −81.5 |
| Al–H | −65.6 | |
| 2,1 | Be–H | −84.1 |
| Al–Me | −55.5 |
B3LYP/6-311++G(d,p) calculated free energy barriers of methane 1,2 addition.
| E/A Elements | ΔG‡ (kcal/mol) |
|---|---|
| Be–B | 35.1 |
| Be–Al | 28.9 |
| Be–Ga | 33.2 |
| Mg–B | 41.2 |
| Mg–Al | 47.2 |
| Mg–Ga | 48.2 |
| Zn–B | 53.8 |
| Zn–Al | 55.9 |
| Zn–Ga | 58.1 |
Figure 5Average calculated free energy barriers for methane activation as a function of divalent metal (blue column) or trivalent element (orange column).
Figure 6Density functional theory (DFT)-optimized geometries of the products of 1,2 (left) and 2,1 (right) addition of methane to the BeB complex. Bond lengths in Å.
Figure 7Reaction diagram for the 1,2 addition of methane to the BeB complex. Quoted free energies are in kcal/mol and reported relative to separated reactants (methane plus complex). Bond lengths in Å.
Bond comparison for all the Be–A complexes. GS—ground state; TS—transition state.
| BeB | BeAl | BeGa | ||
|---|---|---|---|---|
| A–Be Bond | GS | 1.85 | 2.28 | 2.17 |
| TS | 1.85 | 2.23 | 2.16 | |
| Product | 1.85 | 2.29 | 2.19 | |
| TS–GS% Diff | 0.2 | 2.3 | 0.7 | |
| TS–Product% Diff | 0.1 | 2.3 | 1.5 | |
| C–H Bond | GS | 1.09 | 1.09 | 1.09 |
| TS | 1.45 | 1.50 | 1.57 | |
| %Diff | 32.4 | 37.2 | 43.7 | |
| C–Be Bond | TS | 1.92 | 1.87 | 1.84 |
| Product | 1.68 | 1.67 | 1.67 | |
| %Diff | 12.3 | 10.3 | 9.0 | |
| A–H Bond | TS | 1.64 | 2.08 | 1.94 |
| Product | 1.19 | 1.57 | 1.53 | |
| %Diff | 27.5 | 24.8 | 21.0 |
Figure 8DFT-optimized geometries of the products of 1,2 (left) and 2,1 (right) addition of methane to the BeAl complex. Bond lengths in Å.
Figure 9Reaction diagram for the 1,2 addition of methane to the BeAl complex. Quoted free energies are in kcal/mol and reported relative to separated reactants. Bond lengths in Å.
Figure 10DFT-optimized geometries of the products of 1,2 (left) and 2,1 (right) addition of methane to the BeGa complex. Bond lengths in Å.
Figure 11Reaction diagram for the 1,2 addition of methane to the BeGa complex. Quoted free energies are in kcal/mol and reported relative to separated reactants. Bond lengths in Å.
Comparison of Group 2 complexes (Be, Mg, and Ca) with aluminum.
| Complex | 1,2 ΔG (kcal/mol) | 2,1 ΔG (kcal/mol) | TS 1,2 ΔG‡ (kcal/mol) |
|---|---|---|---|
| BeAl | −4.1 | −3.5 | 28.9 |
| MgAl | 12.6 | 11.8 | 47.2 |
| CaAl | 14.9 | 14.0 | 33.7 |
Figure 12BeAl activating complex and the location of the backbone H (highlighted in yellow) for which R groups (R = methyl, fluoro, chloro, cyano, hydroxy, and phenyl) are substituted.
Calculated Gibbs free energy and free energy barriers for 1,2 addition of methane to BeAl activating complex with various substituents on the triel ring.
| Substituent | 1,2 ΔG (kcal/mol) | 2,1 ΔG (kcal/mol) | TS 1,2 ΔG‡ |
|---|---|---|---|
| –H (no sub) | −4.1 | 3.5 | 29.0 |
| –methyl | −3.7 | 2.1 | 29.0 |
| –F | −3.3 | 3.5 | 29.3 |
| –Cl | −3.5 | 2.2 | 28.3 |
| –CN | −3.6 | −0.7 | 27.6 |
| –OH | −2.0 | 4.6 | 29.6 |
| –phenyl | −1.5 | 2.0 | 28.3 |
| Average | −3.1 | 2.5 | 28.7 |
| SD | 1.0 | 1.7 | 0.7 |
Calculated reaction free energies and free energy barriers for nitrogen substituents on the BeAl complex.
| Substituent | 1,2 ΔG (kcal/mol) | 2,1 ΔG (kcal/mol) | TS 1,2 ΔG‡ |
|---|---|---|---|
| –methyl (no sub) | −4.1 | 3.5 | 29.0 |
| –H | −4.7 | 3.0 | 29.5 |
| –F | −2.6 | 2.3 | 28.6 |
| –Cl | −2.4 | 2.7 | 28.2 |
| –OH | −2.6 | 3.5 | 25.8 |
| –phenyl | −2.5 | 2.7 | 22.8 |
| Average | −3.1 | 2.4 | 27.3 |
| SD | 1.0 | 0.5 | 2.6 |
Comparison of 1,3,5-cycloheptatriene with methane activation reaction free energy and free energy barrier reacted with the BeAl complex for 1,2 addition.
| Substrate | ΔG (kcal/mol) | ΔG‡ (kcal/mol) |
|---|---|---|
| 1,3,5-Cycloheptatriene | −5.2 | 14.8 |
| Methane | −4.1 | 28.9 |