Literature DB >> 32555528

Scalable and robust SARS-CoV-2 testing in an academic center.

Paul R Grant1, Nnennaya Kanu2, Jim Aitken3, Karen Ambrose3, Sam Barrell3, Rupert Beale3,2, Ganka Bineva-Todd3, Dhruva Biswas2, Richard Byrne3, Simon Caidan3, Peter Cherepanov3, Laura Churchward4, Graham Clark3, Margaret Crawford3, Laura Cubitt3, Vicky Dearing3, Christopher Earl3, Amelia Edwards3, Chris Ekin1, Efthymios Fidanis3, Alessandra Gaiba3, Steve Gamblin5, Sonia Gandhi6,7,8, Jacki Goldman3, Robert Goldstone3, Maria Greco3, Judith Heaney4, Steve Hindmarsh3, Catherine F Houlihan4, Michael Howell3, Michael Hubank9,10, Deborah Hughes9, Rachael Instrell3, Deborah Jackson3, Mariam Jamal-Hanjani2,4, Ming Jiang3, Mark Johnson3, Leigh Jones3, George Kassiotis3, Stuart Kirk1, Svend Kjaer3, Andrew Levett1, Lisa Levett1, Marcel Levi4, Wei-Ting Lu3, James I MacRae3, John Matthews1, Laura E McCoy2, Catherine Moore11, David Moore2,4, Eleni Nastouli12,13, Jerome Nicod3, Luke Nightingale3, Jessica Olsen3, Nicola O'Reilly3, Amar Pabari1, Venizelos Papayannopoulos3, Namita Patel3, Nigel Peat3, Marc Pollitt3, Peter Ratcliffe3, Caetano Reis E Sousa3, Annachiara Rosa3, Rachel Rosenthal3, Chloe Roustan3, Andrew Rowan3, Gee Yen Shin4,1, Daniel M Snell3, Ok-Ryul Song3, Moira J Spyer2, Amy Strange3, Charles Swanton14,15,16, James M A Turner3, Melanie Turner1, Andreas Wack3, Philip A Walker3, Sophia Ward3,2, Wai Keong Wong4, Joshua Wright3, Mary Wu3.   

Abstract

Entities:  

Mesh：

Year:  2020        PMID： 32555528     DOI： 10.1038/s41587-020-0588-y

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  6 in total

1.  Rapid and simple method for purification of nucleic acids.

Authors:  R Boom; C J Sol; M M Salimans; C L Jansen; P M Wertheim-van Dillen; J van der Noordaa
Journal:  J Clin Microbiol       Date:  1990-03       Impact factor: 5.948

2.  Virological assessment of hospitalized patients with COVID-2019.

Authors:  Roman Wölfel; Victor M Corman; Wolfgang Guggemos; Michael Seilmaier; Sabine Zange; Marcel A Müller; Daniela Niemeyer; Terry C Jones; Patrick Vollmar; Camilla Rothe; Michael Hoelscher; Tobias Bleicker; Sebastian Brünink; Julia Schneider; Rosina Ehmann; Katrin Zwirglmaier; Christian Drosten; Clemens Wendtner
Journal:  Nature       Date:  2020-04-01       Impact factor: 49.962

3.  Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation.

Authors:  Phil Oberacker; Peter Stepper; Donna M Bond; Sven Höhn; Jule Focken; Vivien Meyer; Luca Schelle; Victoria J Sugrue; Gert-Jan Jeunen; Tim Moser; Steven R Hore; Ferdinand von Meyenn; Katharina Hipp; Timothy A Hore; Tomasz P Jurkowski
Journal:  PLoS Biol       Date:  2019-01-10       Impact factor: 8.029

4.  A pneumonia outbreak associated with a new coronavirus of probable bat origin.

Authors:  Peng Zhou; Xing-Lou Yang; Xian-Guang Wang; Ben Hu; Lei Zhang; Wei Zhang; Hao-Rui Si; Yan Zhu; Bei Li; Chao-Lin Huang; Hui-Dong Chen; Jing Chen; Yun Luo; Hua Guo; Ren-Di Jiang; Mei-Qin Liu; Ying Chen; Xu-Rui Shen; Xi Wang; Xiao-Shuang Zheng; Kai Zhao; Quan-Jiao Chen; Fei Deng; Lin-Lin Liu; Bing Yan; Fa-Xian Zhan; Yan-Yi Wang; Geng-Fu Xiao; Zheng-Li Shi
Journal:  Nature       Date:  2020-02-03       Impact factor: 69.504

5.  An emerging coronavirus causing pneumonia outbreak in Wuhan, China: calling for developing therapeutic and prophylactic strategies.

Authors:  Shibo Jiang; Lanying Du; Zhengli Shi
Journal:  Emerg Microbes Infect       Date:  2020-01-31       Impact factor: 7.163

6.  A Novel Coronavirus from Patients with Pneumonia in China, 2019.

Authors:  Na Zhu; Dingyu Zhang; Wenling Wang; Xingwang Li; Bo Yang; Jingdong Song; Xiang Zhao; Baoying Huang; Weifeng Shi; Roujian Lu; Peihua Niu; Faxian Zhan; Xuejun Ma; Dayan Wang; Wenbo Xu; Guizhen Wu; George F Gao; Wenjie Tan
Journal:  N Engl J Med       Date:  2020-01-24       Impact factor: 91.245
  6 in total
  11 in total

1.  Functional antibody and T cell immunity following SARS-CoV-2 infection, including by variants of concern, in patients with cancer: the CAPTURE study.

Authors:  Annika Fendler; Lewis Au; Scott T C Shepherd; Fiona Byrne; Maddalena Cerrone; Laura Amanda Boos; Karolina Rzeniewicz; William Gordon; Benjamin Shum; Camille L Gerard; Barry Ward; Wenyi Xie; Andreas M Schmitt; Nalinie Joharatnam-Hogan; Georgina H Cornish; Martin Pule; Leila Mekkaoui; Kevin W Ng; Eleanor Carlyle; Kim Edmonds; Lyra Del Rosario; Sarah Sarker; Karla Lingard; Mary Mangwende; Lucy Holt; Hamid Ahmod; Richard Stone; Camila Gomes; Helen R Flynn; Ana Agua-Doce; Philip Hobson; Simon Caidan; Michael Howell; Mary Wu; Robert Goldstone; Margaret Crawford; Laura Cubitt; Harshil Patel; Mike Gavrielides; Emma Nye; Ambrosius P Snijders; James I MacRae; Jerome Nicod; Firza Gronthoud; Robyn L Shea; Christina Messiou; David Cunningham; Ian Chau; Naureen Starling; Nicholas Turner; Liam Welsh; Nicholas van As; Robin L Jones; Joanne Droney; Susana Banerjee; Kate C Tatham; Shaman Jhanji; Mary O'Brien; Olivia Curtis; Kevin Harrington; Shreerang Bhide; Jessica Bazin; Anna Robinson; Clemency Stephenson; Tim Slattery; Yasir Khan; Zayd Tippu; Isla Leslie; Spyridon Gennatas; Alicia Okines; Alison Reid; Kate Young; Andrew J S Furness; Lisa Pickering; Sonia Gandhi; Steve Gamblin; Charles Swanton; Emma Nicholson; Sacheen Kumar; Nadia Yousaf; Katalin A Wilkinson; Anthony Swerdlow; Ruth Harvey; George Kassiotis; James Larkin; Robert J Wilkinson; Samra Turajlic
Journal:  Nat Cancer       Date:  2021-10-27

2.  Simple, Inexpensive RNA Isolation and One-Step RT-qPCR Methods for SARS-CoV-2 Detection and General Use.

Authors:  Thomas G W Graham; Claire Dugast-Darzacq; Gina M Dailey; Xavier Darzacq; Robert Tjian
Journal:  Curr Protoc       Date:  2021-04

3.  ARC: An Open Web-Platform for Request/Supply Matching for a Prioritized and Controlled COVID-19 Response.

Authors:  Jean-Denis Courcol; Cédric F Invernizzi; Zachary C Landry; Mikhaél Minisini; Dieter A Baumgartner; Sebastian Bonhoeffer; Barbara Chabriw; Estelle E Clerc; Michael Daniels; Pavlo Getta; Matthieu Girod; Kinga Kazala; Henry Markram; Axel Pasqualini; Clara Martínez-Pérez; François J Peaudecerf; Margit S Peaudecerf; Ulrike Pfreundt; Benjamin R K Roller; Jonasz Słomka; Marie Vasse; Jeanette D Wheeler; César M J A Metzger; Roman Stocker; Felix Schürmann
Journal:  Front Public Health       Date:  2021-02-16

4.  Functional antibody and T-cell immunity following SARS-CoV-2 infection, including by variants of concern, in patients with cancer: the CAPTURE study.

Authors:  Annika Fendler; Lewis Au; Scott T C Shepherd; Fiona Byrne; Maddalena Cerrone; Laura Amanda Boos; Karolina Rzeniewicz; William Gordon; Ben Shum; Camille L Gerard; Barry Ward; Wenyi Xie; Andreas M Schmitt; Nalinie Joharatnam-Hogan; Georgina H Cornish; Martin Pule; Leila Mekkaoui; Kevin W Ng; Eleanor Carlyle; Kim Edmonds; Lyra Del Rosario; Sarah Sarker; Karla Lingard; Mary Mangwende; Lucy Holt; Hamid Ahmod; Richard Stone; Camila Gomes; Helen R Flynn; Ana Agua-Doce; Philip Hobson; Simon Caidan; Michael Howell; Mary Wu; Robert Goldstone; Margaret Crawford; Laura Cubitt; Harshil Patel; Mike Gavrielides; Emma Nye; Ambrosius P Snijders; James I MacRae; Jerome Nicod; Firza Gronthoud; Robyn L Shea; Christina Messiou; David Cunningham; Ian Chau; Naureen Starling; Nicholas Turner; Liam Welsh; Nicholas van As; Robin L Jones; Joanne Droney; Susana Banerjee; Kate C Tatham; Shaman Jhanji; Mary O'Brien; Olivia Curtis; Kevin Harrington; Shreerang Bhide; Jessica Bazin; Anna Robinson; Clemency Stephenson; Tim Slattery; Yasir Khan; Zayd Tippu; Isla Leslie; Spyridon Gennatas; Alicia Okines; Alison Reid; Kate Young; Andrew J S Furness; Lisa Pickering; Sonia Gandhi; Steve Gamblin; Charles Swanton; Emma Nicholson; Sacheen Kumar; Nadia Yousaf; Katalin A Wilkinson; Anthony Swerdlow; Ruth Harvey; George Kassiotis; James Larkin; Robert J Wilkinson; Samra Turajlic
Journal:  Res Sq       Date:  2021-09-20

5.  Reliable and Scalable SARS-CoV-2 qPCR Testing at a High Sample Throughput: Lessons Learned from the Belgian Initiative.

Authors:  Steven Van Vooren; James Grayson; Marc Van Ranst; Elisabeth Dequeker; Lies Laenen; Reile Janssen; Laurent Gillet; Fabrice Bureau; Wouter Coppieters; Nathalie Devos; Benjamin Hengchen; Pierre Wattiau; Sibylle Méhauden; Yvan Verlinden; Kurt Van Baelen; Theresa Pattery; Jean-Pierre Valentin; Kris Janssen; Martine Geraerts; John Smeraglia; Jan Hellemans; Pieter Wytynck; Pieter Mestdagh; Nienke Besbrugge; René Höfer; Friedel Nollet; Jo Vandesompele; Pieter De Smet; John Lebon; Emmanuel Vandewynckele; Steven Verstrepen; Wouter Uten; Arnaud Capron; Hugues Malonne; Jeroen Poels; Emmanuel André
Journal:  Life (Basel)       Date:  2022-01-21

6.  Misuse of SARS-CoV-2 testing in symptomatic health-care staff in the UK - Authors' reply.

Authors:  James R M Black; Chris Bailey; Joanna Przewrocka; Krijn K Dijkstra; Sonia Gandhi; Steve Gamblin; Sam Barrell; Charles Swanton
Journal:  Lancet       Date:  2020-10-24       Impact factor: 79.321

7.  SARS-CoV-2 RNA Extraction Using Magnetic Beads for Rapid Large-Scale Testing by RT-qPCR and RT-LAMP.

Authors:  Steffen Klein; Thorsten G Müller; Dina Khalid; Vera Sonntag-Buck; Anke-Mareil Heuser; Bärbel Glass; Matthias Meurer; Ivonne Morales; Angelika Schillak; Andrew Freistaedter; Ina Ambiel; Sophie L Winter; Liv Zimmermann; Tamara Naumoska; Felix Bubeck; Daniel Kirrmaier; Stephanie Ullrich; Isabel Barreto Miranda; Simon Anders; Dirk Grimm; Paul Schnitzler; Michael Knop; Hans-Georg Kräusslich; Viet Loan Dao Thi; Kathleen Börner; Petr Chlanda
Journal:  Viruses       Date:  2020-08-07       Impact factor: 5.048

Review 8.  Considerations for diagnostic COVID-19 tests.

Authors:  Olivier Vandenberg; Delphine Martiny; Olivier Rochas; Alex van Belkum; Zisis Kozlakidis
Journal:  Nat Rev Microbiol       Date:  2020-10-14       Impact factor: 78.297

Review 9.  Adapting to the Coronavirus Pandemic: Building and Incorporating a Diagnostic Pipeline in a Shared Resource Laboratory.

Authors:  Emma Russell; Ana Agua-Doce; Lotte Carr; Asha Malla; Kerol Bartolovic; Dina Levi; Carl Henderson; Debipriya Das; Hefin Rhys; Philip Hobson; Sukhveer Purewal; Andrew Riddell
Journal:  Cytometry A       Date:  2020-11-22       Impact factor: 4.714

10.  Reduced antibody cross-reactivity following infection with B.1.1.7 than with parental SARS-CoV-2 strains.

Authors:  Nikhil Faulkner; Kevin W Ng; Mary Y Wu; Ruth Harvey; Marios Margaritis; Stavroula Paraskevopoulou; Catherine Houlihan; Saira Hussain; Maria Greco; William Bolland; Scott Warchal; Judith Heaney; Hannah Rickman; Moria Spyer; Daniel Frampton; Matthew Byott; Tulio de Oliveira; Alex Sigal; Svend Kjaer; Charles Swanton; Sonia Gandhi; Rupert Beale; Steve J Gamblin; John W McCauley; Rodney Stuart Daniels; Michael Howell; David Bauer; Eleni Nastouli; George Kassiotis
Journal:  Elife       Date:  2021-07-29       Impact factor: 8.140
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