Literature DB >> 32554594

Measles virus and rinderpest virus divergence dated to the sixth century BCE.

Ariane Düx1,2, Sebastian Lequime3, Philippe Lemey3, Sébastien Calvignac-Spencer4,2, Livia Victoria Patrono1,2, Bram Vrancken3, Sengül Boral5, Jan F Gogarten1,2, Antonia Hilbig1, David Horst5, Kevin Merkel1,2, Baptiste Prepoint2,6, Sabine Santibanez7, Jasmin Schlotterbeck2, Marc A Suchard8,9,10, Markus Ulrich1, Navena Widulin11, Annette Mankertz7, Fabian H Leendertz1, Kyle Harper12, Thomas Schnalke11.   

Abstract

Many infectious diseases are thought to have emerged in humans after the Neolithic revolution. Although it is broadly accepted that this also applies to measles, the exact date of emergence for this disease is controversial. We sequenced the genome of a 1912 measles virus and used selection-aware molecular clock modeling to determine the divergence date of measles virus and rinderpest virus. This divergence date represents the earliest possible date for the establishment of measles in human populations. Our analyses show that the measles virus potentially arose as early as the sixth century BCE, possibly coinciding with the rise of large cities.
Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2020        PMID: 32554594      PMCID: PMC7713999          DOI: 10.1126/science.aba9411

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  58 in total

1.  Variola virus in a 300-year-old Siberian mummy.

Authors:  Philippe Biagini; Catherine Thèves; Patricia Balaresque; Annie Géraut; Catherine Cannet; Christine Keyser; Dariya Nikolaeva; Patrice Gérard; Sylvie Duchesne; Ludovic Orlando; Eske Willerslev; Anatoly N Alekseev; Philippe de Micco; Bertrand Ludes; Eric Crubézy
Journal:  N Engl J Med       Date:  2012-11-22       Impact factor: 91.245

2.  Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations.

Authors:  Sebastian Duchene; Philippe Lemey; Tanja Stadler; Simon Y W Ho; David A Duchene; Vijaykrishna Dhanasekaran; Guy Baele
Journal:  Mol Biol Evol       Date:  2020-11-01       Impact factor: 16.240

3.  BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics.

Authors:  Daniel L Ayres; Michael P Cummings; Guy Baele; Aaron E Darling; Paul O Lewis; David L Swofford; John P Huelsenbeck; Philippe Lemey; Andrew Rambaut; Marc A Suchard
Journal:  Syst Biol       Date:  2019-11-01       Impact factor: 15.683

4.  A model of lineage-1 and lineage-2 rinderpest virus transmission in pastoral areas of East Africa.

Authors:  J C Mariner; J McDermott; J A P Heesterbeek; A Catley; P Roeder
Journal:  Prev Vet Med       Date:  2005-03-29       Impact factor: 2.670

5.  Origin of measles virus: divergence from rinderpest virus between the 11th and 12th centuries.

Authors:  Yuki Furuse; Akira Suzuki; Hitoshi Oshitani
Journal:  Virol J       Date:  2010-03-04       Impact factor: 4.099

6.  Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7.

Authors:  Andrew Rambaut; Alexei J Drummond; Dong Xie; Guy Baele; Marc A Suchard
Journal:  Syst Biol       Date:  2018-09-01       Impact factor: 15.683

7.  Agricultural intensification, priming for persistence and the emergence of Nipah virus: a lethal bat-borne zoonosis.

Authors:  Juliet R C Pulliam; Jonathan H Epstein; Jonathan Dushoff; Sohayati A Rahman; Michel Bunning; Aziz A Jamaluddin; Alex D Hyatt; Hume E Field; Andrew P Dobson; Peter Daszak
Journal:  J R Soc Interface       Date:  2011-06-01       Impact factor: 4.118

8.  Molecular evolution of peste des petits ruminants virus.

Authors:  Murali Muniraju; Muhammad Munir; AravindhBabu R Parthiban; Ashley C Banyard; Jingyue Bao; Zhiliang Wang; Chrisostom Ayebazibwe; Gelagay Ayelet; Mehdi El Harrak; Mana Mahapatra; Geneviève Libeau; Carrie Batten; Satya Parida
Journal:  Emerg Infect Dis       Date:  2014-12       Impact factor: 6.883

9.  Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival.

Authors:  Oliver Smith; Glenn Dunshea; Mikkel-Holger S Sinding; Sergey Fedorov; Mietje Germonpre; Hervé Bocherens; M T P Gilbert
Journal:  PLoS Biol       Date:  2019-07-30       Impact factor: 8.029

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

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  23 in total

1.  Smallpox and other viruses plagued humans much earlier than suspected.

Authors:  Laura Spinney
Journal:  Nature       Date:  2020-08       Impact factor: 49.962

Review 2.  Diversity and evolution of the animal virome.

Authors:  Erin Harvey; Edward C Holmes
Journal:  Nat Rev Microbiol       Date:  2022-01-04       Impact factor: 60.633

3.  Emergence and radiation of distemper viruses in terrestrial and marine mammals.

Authors:  Iben Stokholm; Wendy Puryear; Kaitlin Sawatzki; Steen Wilhelm Knudsen; Thilde Terkelsen; Paul Becher; Ursula Siebert; Morten Tange Olsen
Journal:  Proc Biol Sci       Date:  2021-10-27       Impact factor: 5.349

Review 4.  Detection of Ancient Viruses and Long-Term Viral Evolution.

Authors:  Luca Nishimura; Naoko Fujito; Ryota Sugimoto; Ituro Inoue
Journal:  Viruses       Date:  2022-06-18       Impact factor: 5.818

5.  100-My history of bornavirus infections hidden in vertebrate genomes.

Authors:  Junna Kawasaki; Shohei Kojima; Yahiro Mukai; Keizo Tomonaga; Masayuki Horie
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-18       Impact factor: 11.205

6.  Discovery of Novel Herpes Simplexviruses in Wild Gorillas, Bonobos, and Chimpanzees Supports Zoonotic Origin of HSV-2.

Authors:  Joel O Wertheim; Reilly Hostager; Diane Ryu; Kevin Merkel; Samuel Angedakin; Mimi Arandjelovic; Emmanuel Ayuk Ayimisin; Fred Babweteera; Mattia Bessone; Kathryn J Brun-Jeffery; Paula Dieguez; Winnie Eckardt; Barbara Fruth; Ilka Herbinger; Sorrel Jones; Hjalmar Kuehl; Kevin E Langergraber; Kevin Lee; Nadege F Madinda; Sonja Metzger; Lucy Jayne Ormsby; Martha M Robbins; Volker Sommer; Tara Stoinski; Erin G Wessling; Roman M Wittig; Yisa Ginath Yuh; Fabian H Leendertz; Sébastien Calvignac-Spencer
Journal:  Mol Biol Evol       Date:  2021-06-25       Impact factor: 16.240

7.  Pandemic Legion History More Complex than Previously Thought.

Authors:  Jean-Nicolas Tournier
Journal:  mBio       Date:  2020-10-09       Impact factor: 7.867

Review 8.  The Recovery, Interpretation and Use of Ancient Pathogen Genomes.

Authors:  Sebastián Duchêne; Simon Y W Ho; Ann G Carmichael; Edward C Holmes; Hendrik Poinar
Journal:  Curr Biol       Date:  2020-10-05       Impact factor: 10.834

9.  Detection of Low-Copy Human Virus DNA upon Prolonged Formalin Fixation.

Authors:  Outi I Mielonen; Diogo Pratas; Klaus Hedman; Antti Sajantila; Maria F Perdomo
Journal:  Viruses       Date:  2022-01-12       Impact factor: 5.048

Review 10.  Transboundary Animal Diseases, an Overview of 17 Diseases with Potential for Global Spread and Serious Consequences.

Authors:  Elizabeth A Clemmons; Kendra J Alfson; John W Dutton
Journal:  Animals (Basel)       Date:  2021-07-08       Impact factor: 2.752

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