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Literature DB >> 2409920

Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences.

D A Stahl, D J Lane, G J Olsen, N R Pace.

Abstract

The microorganisms inhabiting a 91 degrees C hot spring in Yellowstone National Park were characterized by sequencing 5S rRNAs isolated from the mixed, natural microflora without cultivation. By comparisons of these sequences with reference sequences, the phylogenetic relationships of the hot spring organisms to better characterized ones were established. Quantitation of the total 5S-sized rRNAs revealed a complex microbial community of three dominant members, a predominant archaebacterium affiliated with the sulfur-metabolizing (dependent) branch of the archaebacteria, and two eubacteria distantly related to Thermus spp. The archaebacterial and the eubacterial 5S rRNAs each constituted about half the examined population.

Entities: Chemical Gene

Mesh：

Substances：

Year: 1985 PMID： 2409920 PMCID： PMC241732 DOI： 10.1128/aem.49.6.1379-1384.1985

Source DB: PubMed Journal: Appl Environ Microbiol ISSN： 0099-2240 Impact factor: 4.792

18 in total

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Authors: T D Brock; M L Brock
Journal: Nature Date: 1971-10-15 Impact factor: 49.962

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Authors: H Hayatsu; Y Wataya; K Kai; S Iida
Journal: Biochemistry Date: 1970-07-07 Impact factor: 3.162

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Authors: G M Studnicka; F A Eiserling; J A Lake
Journal: Nucleic Acids Res Date: 1981-04-24 Impact factor: 16.971

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Authors: H Hori; S Osawa
Journal: Proc Natl Acad Sci U S A Date: 1979-01 Impact factor: 11.205

5. The phylogeny of prokaryotes.

Authors: G E Fox; E Stackebrandt; R B Hespell; J Gibson; J Maniloff; T A Dyer; R S Wolfe; W E Balch; R S Tanner; L J Magrum; L B Zablen; R Blakemore; R Gupta; L Bonen; B J Lewis; D A Stahl; K R Luehrsen; K N Chen; C R Woese
Journal: Science Date: 1980-07-25 Impact factor: 47.728

6. Collection of published 5S and 5.8S ribosomal RNA sequences.

Authors: V A Erdmann; J Wolters; E Huysmans; A Vandenberghe; R De Wachter
Journal: Nucleic Acids Res Date: 1984 Impact factor: 16.971

7. Molecules as documents of evolutionary history.

Authors: E Zuckerkandl; L Pauling
Journal: J Theor Biol Date: 1965-03 Impact factor: 2.691

8. Mapping adenines, guanines, and pyrimidines in RNA.

Authors: H Donis-Keller; A M Maxam; W Gilbert
Journal: Nucleic Acids Res Date: 1977-08 Impact factor: 16.971

9. Thermus aquaticus gen. n. and sp. n., a nonsporulating extreme thermophile.

Authors: T D Brock; H Freeze
Journal: J Bacteriol Date: 1969-04 Impact factor: 3.490

10. Fatty acids and polar lipids of extremely thermophilic filamentous bacterial masses from two Yellowstone hot springs.

Authors: A J Bauman; P G Simmonds
Journal: J Bacteriol Date: 1969-05 Impact factor: 3.476

54 in total

9. Comparison of free-living and particle-associated bacterial communities in the chesapeake bay by stable low-molecular-weight RNA analysis.

Authors: K D Bidle; M Fletcher
Journal: Appl Environ Microbiol Date: 1995-03 Impact factor: 4.792

10. Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria.

Authors: J B Herrick; E L Madsen; C A Batt; W C Ghiorse
Journal: Appl Environ Microbiol Date: 1993-03 Impact factor: 4.792

Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences.

1. Temperature optimum of non-sulphur bacteria from a spring at 90C.

2. Reaction of sodium bisulfite with uracil, cytosine, and their derivatives.

3. A unique secondary folding pattern for 5S RNA corresponds to the lowest energy homologous secondary structure in 17 different prokaryotes.

4. Evolutionary change in 5S RNA secondary structure and a phylogenic tree of 54 5S RNA species.

5. The phylogeny of prokaryotes.

6. Collection of published 5S and 5.8S ribosomal RNA sequences.

7. Molecules as documents of evolutionary history.

8. Mapping adenines, guanines, and pyrimidines in RNA.

9. Thermus aquaticus gen. n. and sp. n., a nonsporulating extreme thermophile.

10. Fatty acids and polar lipids of extremely thermophilic filamentous bacterial masses from two Yellowstone hot springs.

1. Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis.

2. Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms.

3. Phototrophic phylotypes dominate mesothermal microbial mats associated with hot springs in Yellowstone National Park.

Review 4. From structure to function: the ecology of host-associated microbial communities.

5. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing.

Review 6. Metagenomics: application of genomics to uncultured microorganisms.

7. Highways of gene sharing in prokaryotes.

Review 8. Microarray applications in microbial ecology research.

9. Comparison of free-living and particle-associated bacterial communities in the chesapeake bay by stable low-molecular-weight RNA analysis.

10. Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria.